View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1614_low_89 (Length: 274)
Name: NF1614_low_89
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_89 |
 | |
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| [»] chr2 (3 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 26398134 - 26397878
Alignment:
| Q |
18 |
ctaaatgtgtcggatttggtgtatccattaaaagcagtcgccgttcaaaaatttctagacaatttattgatgtgaaatatgcttgcacaagatatgggaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26398134 |
ctaaatgtgtcggatttggtgtatccattaaaagcagtcgccgttcaaaaatttctagacaatttattgatgtgaaatatgcttgcacaagatatgggaa |
26398035 |
T |
|
| Q |
118 |
aaaacgagagtcgaccgcacaaaatccacgtccttgtttgaaggtggaatgtgaggctggtttacatattaaaagaagatgtgatggaaaatgggtggtc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26398034 |
aaaacgagagtcgaccgcacaaaatccacgtccttgtttgaaggtggaatgtgaggctggcttacatattaaaagaagatgtgatggaaaatgggtggtc |
26397935 |
T |
|
| Q |
218 |
catggcttcatcaaagatcacaatcatgaactttttccaacatatgcaccttatttt |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
26397934 |
catggcttcatcaaagatcacaatcatgaactttttccaacatatgcacattatttt |
26397878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 18 - 274
Target Start/End: Original strand, 26459566 - 26459822
Alignment:
| Q |
18 |
ctaaatgtgtcggatttggtgtatccattaaaagcagtcgccgttcaaaaatttctagacaatttattgatgtgaaatatgcttgcacaagatatgggaa |
117 |
Q |
| |
|
|||||||||||||||||||||||| || |||||| || || ||||| |||||||||| |||||||||||||||||||||||||||||| ||| |||| || |
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| T |
26459566 |
ctaaatgtgtcggatttggtgtatgcactaaaagtagccgtcgttcgaaaatttctaaacaatttattgatgtgaaatatgcttgcacgagacatggtaa |
26459665 |
T |
|
| Q |
118 |
aaaacgagagtcgaccgcacaaaatccacgtccttgtttgaaggtggaatgtgaggctggtttacatattaaaagaagatgtgatggaaaatgggtggtc |
217 |
Q |
| |
|
||||||||| ||||| | |||||||||||||||||||||||||| ||||||| ||||| |||||||| ||||||| |||| || | ||||||| || |
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| T |
26459666 |
aaaacgagaatcgacggtgcaaaatccacgtccttgtttgaaggttgaatgtggggctgccttacatatcaaaagaaattgtggtgacagatgggtgatc |
26459765 |
T |
|
| Q |
218 |
catggcttcatcaaagatcacaatcatgaactttttccaacatatgcaccttatttt |
274 |
Q |
| |
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|||| ||||||||||||||||||||||| ||||||||| ||||||| | ||||||| |
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|
| T |
26459766 |
catgaattcatcaaagatcacaatcatgatctttttccagcatatgcgcattatttt |
26459822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 274
Target Start/End: Complemental strand, 25830630 - 25830435
Alignment:
| Q |
78 |
aatttattgatgtgaaatatgcttgcacaagatatgggaaaaaacgagagtcgaccgcacaaaatccacgtccttgtttgaaggtggaatgtgaggctgg |
177 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| | | || | | | || |||||||| || ||||||||||||||||||||||| |||||||| | |
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|
| T |
25830630 |
aatttattgatgtgacttatgcttgcacaagatatagaagaagaaaaaaatccaccgcacataa-ccacgtccttgtttgaaggtggattgtgaggccag |
25830532 |
T |
|
| Q |
178 |
tttacatattaaaagaagatgtgatggaaaatgggtggtccatggcttcatcaaagatcacaatcatgaactttttccaacatatgcaccttatttt |
274 |
Q |
| |
|
|||| || |||| || || ||||||||||| | || ||| |||| || ||||||||||||||| | |||||||||||||||||| ||||||| |
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| T |
25830531 |
cttacgcatcaaaataaattgcaatggaaaatggattgttcatagcttaattaaagatcacaatcataaggtttttccaacatatgcacattatttt |
25830435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 277529 - 277273
Alignment:
| Q |
18 |
ctaaatgtgtcggatttggtgtatccattaaaagcagtcgccgttcaaaaatttctagacaatttattgatgtgaaatatgcttgcacaagatatgggaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
277529 |
ctaaatgtgtcggatttggtgtatccattaaaagcaatcgccgttcaaaaatttctagacaatttattgatgtgaaatatgcttgcacaagatatgggaa |
277430 |
T |
|
| Q |
118 |
aaaacgagagtcgaccgcacaaaatccacgtccttgtttgaaggtggaatgtgaggctggtttacatattaaaagaagatgtgatggaaaatgggtggtc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
277429 |
aaaacgagagtcgaccgcacaaaatccacgtccttgtttgaaggtggaatgtgaggctggcttacatattaaaagaagatgtgatggaaaatgggtggtc |
277330 |
T |
|
| Q |
218 |
catggcttcatcaaagatcacaatcatgaactttttccaacatatgcaccttatttt |
274 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
277329 |
catggcttaatcaaagatcacaatcatgaactttttccaacatatgcacattatttt |
277273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 30419 - 30163
Alignment:
| Q |
18 |
ctaaatgtgtcggatttggtgtatccattaaaagcagtcgccgttcaaaaatttctagacaatttattgatgtgaaatatgcttgcacaagatatgggaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30419 |
ctaaatgtgtcggatttggtgtatccattaaaagcaatcgccgttcaaaaatttctagacaatttattgatgtgaaatatgcttgcacaagatatgggaa |
30320 |
T |
|
| Q |
118 |
aaaacgagagtcgaccgcacaaaatccacgtccttgtttgaaggtggaatgtgaggctggtttacatattaaaagaagatgtgatggaaaatgggtggtc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
30319 |
aaaacgagagtcgaccgcacaaaatccacgtccttgtttgaaggtggaatgtgaggctggcttacatattagaagaagatgtgatggaaaatgggtggtc |
30220 |
T |
|
| Q |
218 |
catggcttcatcaaagatcacaatcatgaactttttccaacatatgcaccttatttt |
274 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30219 |
catggcttgatcaaagatcacaatcatgaactttttccaacatatgcacattatttt |
30163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 19 - 274
Target Start/End: Complemental strand, 20646859 - 20646604
Alignment:
| Q |
19 |
taaatgtgtcggatttggtgtatccattaaaagcagtcgccgttcaaaaatttctagacaatttattgatgtgaaatatgcttgcacaagatatgggaaa |
118 |
Q |
| |
|
||||||||||||||||||||||| || |||||| ||||| ||||| ||||||| || |||||||||||||||||||||||||||||| ||| |||| ||| |
|
|
| T |
20646859 |
taaatgtgtcggatttggtgtatgcactaaaagtagtcgtcgttcgaaaatttataaacaatttattgatgtgaaatatgcttgcacgagacatggtaaa |
20646760 |
T |
|
| Q |
119 |
aaacgagagtcgaccgcacaaaatccacgtccttgtttgaaggtggaatgtgaggctggtttacatattaaaagaagatgtgatggaaaatgggtggtcc |
218 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| ||||||||||||||||| ||||| |||||||| ||||||| |||| || ||||||||| ||| |
|
|
| T |
20646759 |
aaacgagaatcgacggcacaaaatccacgtcctcttttgaaggtggaatgtggggctgccttacatataaaaagaaattgtggtgacaaatgggtgatcc |
20646660 |
T |
|
| Q |
219 |
atggcttcatcaaagatcacaatcatgaactttttccaacatatgcaccttatttt |
274 |
Q |
| |
|
||| ||| |||||||||||||||||||| ||||||||| ||||||| | ||||||| |
|
|
| T |
20646659 |
atgactttatcaaagatcacaatcatgatctttttccagcatatgcgcattatttt |
20646604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 39 - 274
Target Start/End: Original strand, 56107932 - 56108167
Alignment:
| Q |
39 |
tatccattaaaagcagtcgccgttcaaaaatttctagacaatttattgatgtgaaatatgcttgcacaagatatgggaaaaaacgagagtcgaccgcaca |
138 |
Q |
| |
|
|||| ||||||| ||||| |||||||| ||||||||| | ||||||||||| | ||||||||||||||||| || || || ||||| || | |||| |
|
|
| T |
56107932 |
tatcaattaaaaatagtcgtcgttcaaagatttctagagagtttattgatgtaagttatgcttgcacaagatacggcaagaagcgagaatccagttcaca |
56108031 |
T |
|
| Q |
139 |
aaatccacgtccttgtttgaaggtggaatgtgaggctggtttacatattaaaagaagatgtgatggaaaatgggtggtccatggcttcatcaaagatcac |
238 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||| | ||||||||| ||||||||||||||| | || ||| ||||||| ||||| ||| |
|
|
| T |
56108032 |
aaatccacgtccttgtttgaaggtgggatgtgaggctagtttacgtgttaaaagaatttgtgatggaaaatggattgttcatagcttcattaaagaccac |
56108131 |
T |
|
| Q |
239 |
aatcatgaactttttccaacatatgcaccttatttt |
274 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||||||| |
|
|
| T |
56108132 |
aatcacgaactttttccagcatatgcacattatttt |
56108167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 846029 - 845781
Alignment:
| Q |
18 |
ctaaatgtgtcggatttggtgtatccattaaaagcagtcgccgttcaaaaatttctagacaatttattgatgtgaaatatgcttgcacaagatatgg-ga |
116 |
Q |
| |
|
|||||||||| ||||| ||||||| || |||||| ||||| |||| ||||||| || |||||||||||||||||||||||||||| | ||| |||| | |
|
|
| T |
846029 |
ctaaatgtgttggattaggtgtatgcactaaaagtagtcgtcgtttgaaaatttttaaacaatttattgatgtgaaatatgcttgcccgagacatggtaa |
845930 |
T |
|
| Q |
117 |
aaaaacgagagtcgaccgcacaaaatccacgtccttgtttgaaggtggaatgtgaggctggtttacatattaaaagaagatgtgatggaaaatgggtggt |
216 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||| || | ||||||| | |
|
|
| T |
845929 |
aaaaacgagaatcaacgacacaaaatccacgtccttgtttgaaggtggaatgtggggctgccttacatatcaaaag---------tgacagatgggtgat |
845839 |
T |
|
| Q |
217 |
ccatggcttcatcaaagatcacaatcatgaactttttccaacatatgcaccttatttt |
274 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||||||| ||||||| | ||||||| |
|
|
| T |
845838 |
ccatgacttcatcaaagatcacaatcatgatctttttccagcatatgcgcattatttt |
845781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 59 - 274
Target Start/End: Original strand, 6965224 - 6965439
Alignment:
| Q |
59 |
cgttcaaaaatttctagacaatttattgatgtgaaatatgcttgcacaagatatgggaaaaaacgagagtcgaccgcacaaaatccacgtccttgtttga |
158 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||| | ||||||||||||||||| || || || ||||| || | |||||||||||||||||||||||| |
|
|
| T |
6965224 |
cgttcaaagatttctagagagtttattgatgtaagttatgcttgcacaagatacggcaagaagcgagaatccagttcacaaaatccacgtccttgtttga |
6965323 |
T |
|
| Q |
159 |
aggtggaatgtgaggctggtttacatattaaaagaagatgtgatggaaaatgggtggtccatggcttcatcaaagatcacaatcatgaactttttccaac |
258 |
Q |
| |
|
|||||| |||||||||| |||||| | ||||||||| ||||||||||||||| | || ||| ||||||| ||||| ||||||| ||||||||| | | |
|
|
| T |
6965324 |
aggtgggatgtgaggctagtttacgtgttaaaagaatttgtgatggaaaatggattgttcatagcttcattaaagaccacaatcccaaactttttctagc |
6965423 |
T |
|
| Q |
259 |
atatgcaccttatttt |
274 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
6965424 |
atatgcacattatttt |
6965439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 59 - 274
Target Start/End: Original strand, 26013719 - 26013934
Alignment:
| Q |
59 |
cgttcaaaaatttctagacaatttattgatgtgaaatatgcttgcacaagatatgggaaaaaacgagagtcgaccgcacaaaatccacgtccttgtttga |
158 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||| | ||||||||||| ||||| || || || ||||| || | |||||||||||||||||||||||| |
|
|
| T |
26013719 |
cgttcaaagatttctagagagtttattgatgtaagttatgcttgcacgagatacggcaagaagcgagaatctagttcacaaaatccacgtccttgtttga |
26013818 |
T |
|
| Q |
159 |
aggtggaatgtgaggctggtttacatattaaaagaagatgtgatggaaaatgggtggtccatggcttcatcaaagatcacaatcatgaactttttccaac |
258 |
Q |
| |
|
|||||| |||||||||| ||||| | ||||||||| ||||||||||||||| | || ||| ||||||| ||||| |||||||| ||||||||||| | |
|
|
| T |
26013819 |
aggtgggatgtgaggctagtttatgtgttaaaagaatttgtgatggaaaatggattgttcatagcttcattaaagaccacaatcacaaactttttccagc |
26013918 |
T |
|
| Q |
259 |
atatgcaccttatttt |
274 |
Q |
| |
|
|||||||| ||||||| |
|
|
| T |
26013919 |
atatgcacattatttt |
26013934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 78 - 274
Target Start/End: Original strand, 33001958 - 33002154
Alignment:
| Q |
78 |
aatttattgatgtgaaatatgcttgcacaagatatgggaaaaaacgagagtcgaccgcacaaaatccacgtccttgtttgaaggtggaatgtgaggctgg |
177 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||| ||| || || ||| | || ||||||||||||||||||||| | |||||| | |
|
|
| T |
33001958 |
aatttattgatgtgacttatgcttgcacaagatatggaaaaaagagagcatccacagcagataacccacgtccttgtttgaaggtgaattgtgagatcag |
33002057 |
T |
|
| Q |
178 |
tttacatattaaaagaagatgtgatggaaaatgggtggtccatggcttcatcaaagatcacaatcatgaactttttccaacatatgcaccttatttt |
274 |
Q |
| |
|
|||| || |||| || ||||||||||||||| | || ||| ||||||| ||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
33002058 |
cttacgcatcaaaataaattgtgatggaaaatggattgttcatagcttcattaaagatcacaatcatgaggtttttccaacatatgcacattatttt |
33002154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 274
Target Start/End: Original strand, 13863428 - 13863646
Alignment:
| Q |
58 |
ccgttcaaaaatttctagacaatttattgatgtgaaatatgcttgcacaagatat--gggaaaaaacgagagtcgaccgcacaaaatccacgtccttgtt |
155 |
Q |
| |
|
||||||||| ||||||||| | ||||||||||| | ||||||||||| ||||| || || || ||||| || | |||||||||||||||||| || |
|
|
| T |
13863428 |
ccgttcaaagatttctagagagtttattgatgtaagttatgcttgcacgagatacacggcaagaagcgagaatccaattcacaaaatccacgtccttatt |
13863527 |
T |
|
| Q |
156 |
tgaaggtggaatgtgaggctggtttacatattaaaagaagatgtgatggaaaatgggtggtccatggcttcatcaaagatcacaatcatgaactttttcc |
255 |
Q |
| |
|
||||||||| ||| |||||| |||||| |||||||| || ||||||| |||||| | || ||| ||||||| ||||| |||||||| ||||||||| | |
|
|
| T |
13863528 |
tgaaggtgggatgcgaggctagtttacgtattaaaaaaaattgtgatgcgaaatggattgttcatagcttcattaaagaccacaatcacgaacttttttc |
13863627 |
T |
|
| Q |
256 |
aacatatgcaccttatttt |
274 |
Q |
| |
|
| ||||| ||| ||||||| |
|
|
| T |
13863628 |
agcatattcacattatttt |
13863646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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