View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1614_low_9 (Length: 676)

Name: NF1614_low_9
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1614_low_9
NF1614_low_9
[»] chr5 (1 HSPs)
chr5 (41-666)||(10863637-10864262)


Alignment Details
Target: chr5 (Bit Score: 550; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 41 - 666
Target Start/End: Original strand, 10863637 - 10864262
Alignment:
Q  41 ccaattatccctcatgaaaattggttagggatttaatcatatgttgggacatgaactcctcattgtactcgaaactgatctctatggatggcatcccttc 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||    
T  10863637 ccaattatccctcatgaaaattggttagggatttaatcatatgttgggacatgaactcctcattgtacttgacagtgatctctagggatggcatcccttc 10863736  T
Q  141 ttccacggtggccttgtccaccttatttttaccagttgtttgaaacaaatgttttatcttgccccccaatttttctatgagaatcttgagacattttagg 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  10863737 ttccacggtggccttgtccaccttatttttaccagttgtttgaaacaaatgtttgatcttgccccccaatttttctatgagaaccttgagacattttagg 10863836  T
Q  241 actttacatggagatttaccattgcattaagtctagggtaagtcgtcccaccttacgaggtttactattaccaaaatcactaaaatttggatgtttgtgg 340  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  10863837 actttacatggagatttaccattgcactaagtctagggtaagccgtcccaccttaggaggtttactattaccaaaatcactaaaatttggatgtttgtgg 10863936  T
Q  341 tggctagtctgccaaacattgcagttttatctatatgattgactttttgtatgcactcgtttgatctaaactttggcctccaaaccttattaatcacctt 440  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  10863937 tggctagtctgccaaacattgcagttttatctatatgattgactttttgtatgaactcgtttgatctaaactttggccttcaaaccttattaatcacctt 10864036  T
Q  441 attctatttcccacacgttctgaacaaagtaggctaagagaatgataccattaccatcttcataacttggaaaggatcgatattaatggctatctcttcc 540  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  10864037 attctatttcccacacgttctgaacaaagtaggctaagagaatgataccattaccatcttcataacttggaaaggattgttattaatggctatctcttcc 10864136  T
Q  541 atccttttgttggatagttcaaacttgtcttccttaataggattttgaatggccttatgagacaaaatgtaattgttcgttgagcgattttaaaagttgt 640  Q
    |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  10864137 atccttttgtgggatagttcaaacttttcttccttaataagattttgaatggccttatgagacaaaatgtaattgttcgttgagtgattttaagagttgt 10864236  T
Q  641 gctatttgcaaaacattttgcctttg 666  Q
    |||||||||| |||||||||||||||    
T  10864237 gctatttgcagaacattttgcctttg 10864262  T

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