View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1614_low_96 (Length: 254)
Name: NF1614_low_96
Description: NF1614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1614_low_96 |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: scaffold0229 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 14134 - 13966
Alignment:
| Q |
68 |
agcatgggacctaagccatcgcacccccgacctatgcctagggtcggccttgatgcattgtacattttggttttggttcctcgatatatttatactatta |
167 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14134 |
agcatgggacctaagccatcgcaccctcaacctatgcctagggtcggccttggtgcattgtacattttggttttggttcctcgatatatttatactatta |
14035 |
T |
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| Q |
168 |
tttgatattgctccataataaagaacaaatttgagatgatattgatttgttattgttgaaagctctcta |
236 |
Q |
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| T |
14034 |
tttgatattgctccataataaagaacaaatttgagatgatattgatttgttattgttgaaagctctcta |
13966 |
T |
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Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 68 - 236
Target Start/End: Complemental strand, 1212971 - 1212803
Alignment:
| Q |
68 |
agcatgggacctaagccatcgcacccccgacctatgcctagggtcggccttgatgcattgtacattttggttttggttcctcgatatatttatactatta |
167 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1212971 |
agcatgggacctaagccatcgcaccctcaacctatgcctagggtcggccttggtgcattgtacattttggttttggttcctcgatatatttatactatta |
1212872 |
T |
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| Q |
168 |
tttgatattgctccataataaagaacaaatttgagatgatattgatttgttattgttgaaagctctcta |
236 |
Q |
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| T |
1212871 |
tttgatattgctccataataaagaacaaatttgagatgatattgatttgttattgttgaaagctctcta |
1212803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 1215931 - 1215872
Alignment:
| Q |
10 |
ataatactaattagcttattatagcaacaaaatgcagcaaaaatgaaaacaattactaag |
69 |
Q |
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| T |
1215931 |
ataattctaattagcttattatagcaacaaaatgcagcaaaaatgaaaacaattactaag |
1215872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 14286647 - 14286608
Alignment:
| Q |
77 |
cctaagccatcgcacccccgacctatgcctagggtcggcc |
116 |
Q |
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|||| |||||||||||||||||||||| |||||||||||| |
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| T |
14286647 |
cctaggccatcgcacccccgacctatgtctagggtcggcc |
14286608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 110
Target Start/End: Original strand, 23763771 - 23763809
Alignment:
| Q |
72 |
tgggacctaagccatcgcacccccgacctatgcctaggg |
110 |
Q |
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| T |
23763771 |
tgggacctaagctatcgcacccccaacctatgcctaggg |
23763809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 30695929 - 30695882
Alignment:
| Q |
21 |
tagcttattatagcaacaaaatgcagcaaaaatgaaaacaattactaa |
68 |
Q |
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| T |
30695929 |
tagcttatcatagcaacaagatgcagcaaaaatgaaaacaattactaa |
30695882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 39482941 - 39482888
Alignment:
| Q |
68 |
agcatgggacctaagccatcgcacccccgacctatgcctagggtcggccttgat |
121 |
Q |
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| T |
39482941 |
agcatgggccctaggccgtcgtaccaccgacctatacctagggtcggccttgat |
39482888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 116
Target Start/End: Complemental strand, 12027470 - 12027430
Alignment:
| Q |
77 |
cctaagccatcgcacccccgacctat-gcctagggtcggcc |
116 |
Q |
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| T |
12027470 |
cctaagacatcgcacccccgacctatggcctagggtcggcc |
12027430 |
T |
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