View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16150_high_1_N (Length: 651)
Name: NF16150_high_1_N
Description: NF16150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16150_high_1_N |
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Alignment Details
Target: chr7 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 121 - 621
Target Start/End: Original strand, 49007671 - 49008175
Alignment:
| Q |
121 |
acataactcaccctttactaacaattaactaactttatct----taggtaataacagttgctgctggcacaatggatcgtgaatttcacggggatttaac |
216 |
Q |
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| T |
49007671 |
acataactcaccctttactaacaattaactaactttatctctaataggtaataacagttgctgctggcacaatggatcgtgaatttcacggggatttaac |
49007770 |
T |
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| Q |
217 |
acttggaaatggagccaaagtcactggtttgtctctctatccggggaatttttcttcaggcaaggtcccaatggttttcttgagctcagacgacaatgag |
316 |
Q |
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| T |
49007771 |
acttggaaatggagccaaagtcactggtttgtctctctatccggggaatttttcttcaggcaaggtcccaatggttttcttgagctcatgtgataatttg |
49007870 |
T |
|
| Q |
317 |
atggacatcatcagagcaagaaacaagatcgtggtgtgtgaagacaagaaccgaacacttgctactcaagtggataacttggacagaataaaagttgttg |
416 |
Q |
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| T |
49007871 |
aaagaactcatcagagcaagaaacaagatcgtggtgtgtgaagacaagaaccgaacacttgctactcaagtggataacttggacagaataaaagttgttg |
49007970 |
T |
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| Q |
417 |
cgggtgttttcatatcaaatagttctgaggatataacatattacattcaaactaagtttccatctannnnnnngaatccaattaatggagaacttatcaa |
516 |
Q |
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| T |
49007971 |
cgggtgttttcatatcaaatagttctgaggatataacatattacattcaaactaagtttccatctatttttttgaatccaattaatggagaacttatcaa |
49008070 |
T |
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| Q |
517 |
ggatttcattaagtgcaatactaatccaaaagcaagcatgcaatttaataaaactgttttaggtacaaaaccagcaccaagtgtggatagttatagctca |
616 |
Q |
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| T |
49008071 |
ggatttcattaagtgcaatactaatccaaaagcaagcatgcaatttaataaaactgttttaggtacaaaaccagcaccaagtgtggatagttatagctca |
49008170 |
T |
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| Q |
617 |
agagg |
621 |
Q |
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| T |
49008171 |
agagg |
49008175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 49007517 - 49007622
Alignment:
| Q |
20 |
gtgcttgaaactctccacaatggaacaccatgggtaatattatcgaagtatctcatttattgatagcttaatcaataataaatacgaaagactttgttta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49007517 |
gtgcttgaaactctccacaatggaacaccatgggtaatattatcgaagtatctcatttattgatagcttaatcaataataaatacgaaagactttgttta |
49007616 |
T |
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| Q |
120 |
gacata |
125 |
Q |
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|||||| |
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| T |
49007617 |
gacata |
49007622 |
T |
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