View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16150_high_2 (Length: 452)
Name: NF16150_high_2
Description: NF16150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16150_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 16 - 440
Target Start/End: Complemental strand, 28783618 - 28783194
Alignment:
| Q |
16 |
acctgtgcctatctatgaaaaacctatccctcctcctacacctgtttatgagaaacctcttcctccacctacacctgtctatgagaaacctcttcctccg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
28783618 |
acctgtgcctatctatgaaaaacctatccctcctcctacacctgtttatgagaaacctcttcctccacctacacctgtctacgagaaacctcttcctccg |
28783519 |
T |
|
| Q |
116 |
cctgtgcctgtttaccataaacctctccctccacctacacctgtgtatgagaaacctcttcctccacctgtgcctgtttatcataaacctctccctccac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28783518 |
cctgtgcctgtttaccataaacctctccctccacctacacctgtgtatgagaaacctcttcctccacctgtgcctgtttatcataaacctctccctccac |
28783419 |
T |
|
| Q |
216 |
ctacgcctgtatatcataaacctcttcctcctcctgttccagtcaagaaaccatgtccaccaccaaaggttgaacatccagttctaccacctgctccagt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28783418 |
ctacgcctgtatatcataaacctcttcctcctcctgttccagtcaagaaaccatgtccaccaccaaaggttgaacatccagttctaccacctgctccagt |
28783319 |
T |
|
| Q |
316 |
atacaaacctcctccagttccaaagccacaaccaccaccggttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgtt |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28783318 |
atacaaacctcctccagttccaaagccacaaccaccaccggttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgtt |
28783219 |
T |
|
| Q |
416 |
ccagtatacaaacctccacaggttc |
440 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
28783218 |
ccagtatacaaacctccaccggttc |
28783194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 251 - 433
Target Start/End: Complemental strand, 28783278 - 28783099
Alignment:
| Q |
251 |
gttccagtcaagaaaccatgtccaccaccaaaggttgaacatccagttctaccacctgctccagtatacaaacctcctccagttccaaagccacaaccac |
350 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||| ||| |||| |
|
|
| T |
28783278 |
gttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctccaccggttccaaaggcacttccac |
28783179 |
T |
|
| Q |
351 |
caccggttccggtcaagaaaccatgtccaccaccaaaggttgaacatccagttttaccacctgttccagtatacaaacctcca |
433 |
Q |
| |
|
|||| || ||| |||||||||||||||| ||||||| |||| || |||||| |||||||||||||| |||| || |||||| |
|
|
| T |
28783178 |
caccagtcccgatcaagaaaccatgtcc---accaaagattgagcacccagttctaccacctgttccaatatataagcctcca |
28783099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 66 - 252
Target Start/End: Complemental strand, 28783634 - 28783448
Alignment:
| Q |
66 |
agaaacctcttcctccacctacacctgtctatgagaaacctcttcctccgcctgtgcctgtttaccataaacctctccctccacctacacctgtgtatga |
165 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||| |||||| | ||||| ||| |||||||| | |||||||| ||||||||||||||||| || || |
|
|
| T |
28783634 |
agaaaccttgtcctccacctgtgcctatctatgaaaaacctatccctcctcctacacctgtttatgagaaacctcttcctccacctacacctgtctacga |
28783535 |
T |
|
| Q |
166 |
gaaacctcttcctccacctgtgcctgtttatcataaacctctccctccacctacgcctgtatatcataaacctcttcctcctcctgt |
252 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||| | |||||||||||||| ||||| |
|
|
| T |
28783534 |
gaaacctcttcctccgcctgtgcctgtttaccataaacctctccctccacctacacctgtgtatgagaaacctcttcctccacctgt |
28783448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University