View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16150_high_3 (Length: 366)
Name: NF16150_high_3
Description: NF16150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16150_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 43003348 - 43003707
Alignment:
| Q |
1 |
tagtcgacgtctatttccatccacaatcctccgttcaataaacaacatttgctgacaattattttgacagtttgcgagaaaacaccactaatgacaacaa |
100 |
Q |
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| T |
43003348 |
tagtcgacgtctatttccatccacaatcctccgttcaataaacaacatttgctgacaattattttgacagtttgcgagaaaacaacactaatgacaacaa |
43003447 |
T |
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| Q |
101 |
gctaattaaattgacaaagataaacaaaaatatagaagaaaatttaaaagactacgatttattttgaagacataaaatccacaacaattgcaatctcacc |
200 |
Q |
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| T |
43003448 |
gctaattaa-ttgacaaagataaacaaaaatatagaagaaaatttaaaagactacgatttattttgaagatataaaatccacaacaattgcaatctcacc |
43003546 |
T |
|
| Q |
201 |
atataaatgtacaaatttatatgtaaaactctat----ctgaccatgaattcatatgtaattgtcaaataaagcaaactaaaaaccccacatatatttat |
296 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43003547 |
atataaatgtacaaatttatatgtaaaactctatatatctgaccatgaattcatatgtaattgtcaaataaagcaaactaaaaaccccacatatatttat |
43003646 |
T |
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| Q |
297 |
ataggatatcttattgaaaccctctttaacaaaggtatatgatcccattaagtagtattat |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43003647 |
ataggatatcttattgaaaccctctttaacaaaggtatatgatcccattaagtagtattat |
43003707 |
T |
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