View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16150_low_1 (Length: 389)
Name: NF16150_low_1
Description: NF16150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16150_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 14 - 372
Target Start/End: Complemental strand, 43003707 - 43003346
Alignment:
| Q |
14 |
ataatactacttaatgggatcatatacctttgttaaagagggtttcaataagatatcctatataaatatatgtggggtttttagtttgctttatttgaca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43003707 |
ataatactacttaatgggatcatatacctttgttaaagagggtttcaataagatatcctatataaatatatgtggggtttttagtttgctttatttgaca |
43003608 |
T |
|
| Q |
114 |
attacatatgaattcatggtcagata----gagttttacatataaatttgtacatttatatggtgagattgcaattgttgtggattttatatcttcaaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43003607 |
attacatatgaattcatggtcagatatatagagttttacatataaatttgtacatttatatggtgagattgcaattgttgtggattttatatcttcaaaa |
43003508 |
T |
|
| Q |
210 |
taaatcgtagtcttttaaattttcttctatatttttgtttatctttgtcaatttaattagcttgttgtcattagtggtgttttctcgcaaactgtcaaaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
43003507 |
taaatcgtagtcttttaaattttcttctatatttttgtttatctttgtcaa-ttaattagcttgttgtcattagtgttgttttctcgcaaactgtcaaaa |
43003409 |
T |
|
| Q |
310 |
taattgtcagcaaatgttgtttattgaacggaggattgtggatggaaatagacgtcgactatg |
372 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43003408 |
taattgtcagcaaatgttgtttattgaacggaggattgtggatggaaatagacgtcgactatg |
43003346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University