View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16151_high_10 (Length: 432)
Name: NF16151_high_10
Description: NF16151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16151_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 14 - 414
Target Start/End: Complemental strand, 35600130 - 35599732
Alignment:
| Q |
14 |
ttctgctcatcaaaaattgaattttgatttaaaatactagtgtttgagattgtgaagtatgatcaaacatatcaaggtaaagcatcgtaatttataaagt |
113 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35600130 |
ttctgctcatcaaaaattgaattttgatttagcatactagtgtttgagattgtgaagtatgatcaaacatatcaaggtaaagcatcgtaatttataaagt |
35600031 |
T |
|
| Q |
114 |
agattagtgagattttcttggttggtggatggagccaaacaactgaaattagcgagaatctacttgtatatagatgcaatctcttgtatattatgtaacg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35600030 |
agattagtgagattttcttggttggtggatggagccaaacaactgaaattagcgagaatctacttgtatatagatgcaatctcttgtatatcatgtaacg |
35599931 |
T |
|
| Q |
214 |
tttactatgtgatccctagttttcatctgtcaaacattgccaattctcatctcattaaacttgagtctagataatcatgtcgcttttacagtcttactta |
313 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
35599930 |
tttactatgtgatccctagttttcatc--tcaaacattgccaattctcatctcattaaacttgagtctagatactcatgtcgcttttacagtcttactta |
35599833 |
T |
|
| Q |
314 |
atgaaagatttttgattataaagtcttcttcccagctcatattgagaatttgctcgttgtctccaataatggatctagaaattttctacaatgagggcaa |
413 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35599832 |
atgaaagatttttgattgtaaagtcttcttcccagctcatattgagaatttgcttgttgtctccaataatggatctagaaattttctacaatgagggcaa |
35599733 |
T |
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