View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16151_high_3 (Length: 524)
Name: NF16151_high_3
Description: NF16151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16151_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Complemental strand, 19271340 - 19270820
Alignment:
| Q |
1 |
ggcgacgtggaagccggattcgcgaaactccaaggcgaagatttcgaatactacatgcaaacctacagcataatcctcggccgcaactccaagaaatcca |
100 |
Q |
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| T |
19271340 |
ggcgacgtggaagccggattcgcgaaactccaaggcgaagatttcgaatactacatgcaaacctacagcataatcctcggccgcaactccaagaaatcca |
19271241 |
T |
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| Q |
101 |
ccgtcgacgtcgacctatcaagtctcggcggaggaatgaacatctcccgtcaccatgctcgtatcttctacgactttgctcgtcgtcgtttcgctctgga |
200 |
Q |
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| T |
19271240 |
ccgtcgacgtcgacctatcaagtctcggcggaggaatgaacatctcccgtcatcatgctcgtatcttctacgactttgctcgtcgtcgtttcgctctgga |
19271141 |
T |
|
| Q |
201 |
agttttgggaaaaaacggttgtttagttgaaggtgttcttcatttacctggtaacgctcctgtcaagcttgattctcaggatcttcttcagatcggtgat |
300 |
Q |
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| T |
19271140 |
agttttgggaaaaaacggttgtttagttgaaggtgttcttcatttacctggtaacgctcctgtcaagcttgattctcaggatcttcttcagatcggtgat |
19271041 |
T |
|
| Q |
301 |
aaggagttttactttctgcttcctgtgaggagtattcttggtggggccggtgctcggcgtaatgttgctactcctgctgctgttgctcctccttctgctg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
19271040 |
aaggagttttactttctgcttcctgtgaggagtattcttggtggggccggtgctcggcgtaatgttgctactcctgctgctgttgctccttctgctgctg |
19270941 |
T |
|
| Q |
401 |
tgccgcattatagttatggacatctgcctgctggggctggtgctggtgccg------gtgcgatggtgaagaaagggaggagggagtattatgaggagga |
494 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19270940 |
tgccgcattatagttatggacatctgcctgctggggctggtgctggtgccggtgccggtgcgatggtgaagaaagggaggagggagtattatgaggagga |
19270841 |
T |
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| Q |
495 |
gtatgagatggatgatgatgt |
515 |
Q |
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| T |
19270840 |
gtatgagatggatgatgatgt |
19270820 |
T |
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