View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16151_high_4 (Length: 509)

Name: NF16151_high_4
Description: NF16151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16151_high_4
NF16151_high_4
[»] chr4 (19 HSPs)
chr4 (13-492)||(39506839-39507323)
chr4 (288-342)||(3144652-3144706)
chr4 (288-342)||(20743278-20743332)
chr4 (268-338)||(49659502-49659573)
chr4 (228-342)||(24343512-24343632)
chr4 (296-389)||(34515882-34515975)
chr4 (228-294)||(53381530-53381596)
chr4 (301-341)||(7424676-7424716)
chr4 (296-340)||(31243556-31243600)
chr4 (228-279)||(19482747-19482798)
chr4 (227-294)||(23292925-23292991)
chr4 (241-299)||(3947714-3947771)
chr4 (272-342)||(16402195-16402265)
chr4 (288-342)||(32910556-32910610)
chr4 (228-294)||(34306744-34306809)
chr4 (226-271)||(25950470-25950515)
chr4 (295-340)||(50848310-50848355)
chr4 (290-341)||(30520438-30520490)
chr4 (288-340)||(53968553-53968605)
[»] chr8 (14 HSPs)
chr8 (228-340)||(39820436-39820547)
chr8 (248-353)||(1676706-1676811)
chr8 (285-342)||(35431137-35431194)
chr8 (240-339)||(31580079-31580178)
chr8 (291-341)||(9936820-9936870)
chr8 (290-340)||(13845241-13845291)
chr8 (228-342)||(30067968-30068082)
chr8 (241-339)||(12559053-12559157)
chr8 (300-337)||(26507450-26507487)
chr8 (241-300)||(44067574-44067633)
chr8 (288-342)||(13009493-13009547)
chr8 (228-278)||(29510233-29510283)
chr8 (296-340)||(28883886-28883930)
chr8 (288-340)||(40063958-40064010)
[»] chr5 (17 HSPs)
chr5 (224-348)||(7997102-7997226)
chr5 (288-340)||(43554528-43554580)
chr5 (288-338)||(39695999-39696049)
chr5 (228-341)||(32630675-32630788)
chr5 (295-340)||(19293430-19293475)
chr5 (290-358)||(25863193-25863261)
chr5 (295-338)||(29365015-29365058)
chr5 (228-278)||(2436980-2437030)
chr5 (241-338)||(26312778-26312875)
chr5 (254-341)||(2577145-2577233)
chr5 (294-339)||(15410454-15410499)
chr5 (305-342)||(18162060-18162097)
chr5 (290-339)||(31264446-31264495)
chr5 (290-342)||(18607099-18607151)
chr5 (297-341)||(21577117-21577161)
chr5 (228-276)||(38464313-38464361)
chr5 (298-342)||(42469226-42469270)
[»] chr3 (22 HSPs)
chr3 (232-348)||(25651969-25652091)
chr3 (242-326)||(12100290-12100374)
chr3 (267-342)||(15864838-15864913)
chr3 (241-342)||(24204994-24205095)
chr3 (228-341)||(25074795-25074914)
chr3 (290-340)||(25892467-25892517)
chr3 (228-340)||(3730108-3730217)
chr3 (228-339)||(55401083-55401194)
chr3 (296-339)||(1830351-1830394)
chr3 (288-350)||(27903629-27903691)
chr3 (245-342)||(25365467-25365564)
chr3 (288-348)||(12704657-12704717)
chr3 (228-279)||(40052380-40052431)
chr3 (228-291)||(52369843-52369906)
chr3 (288-342)||(52369780-52369834)
chr3 (243-339)||(10954960-10955056)
chr3 (288-341)||(14223853-14223906)
chr3 (296-341)||(20691325-20691370)
chr3 (245-341)||(21149073-21149169)
chr3 (296-341)||(40150579-40150624)
chr3 (228-339)||(40993275-40993387)
chr3 (228-327)||(7171521-7171620)
[»] chr7 (16 HSPs)
chr7 (241-341)||(12278841-12278941)
chr7 (267-342)||(23751905-23751980)
chr7 (288-340)||(29812664-29812716)
chr7 (288-342)||(23930224-23930278)
chr7 (226-337)||(7133210-7133327)
chr7 (227-292)||(17852056-17852120)
chr7 (292-341)||(32855360-32855409)
chr7 (228-300)||(5409771-5409842)
chr7 (228-339)||(15680817-15680928)
chr7 (291-342)||(4017797-4017848)
chr7 (291-342)||(22683758-22683809)
chr7 (226-300)||(32093952-32094026)
chr7 (229-276)||(32308202-32308249)
chr7 (288-342)||(17780084-17780138)
chr7 (241-294)||(32287416-32287468)
chr7 (228-339)||(598216-598327)
[»] chr1 (18 HSPs)
chr1 (228-352)||(22794018-22794142)
chr1 (288-342)||(42004947-42005001)
chr1 (290-349)||(6936402-6936461)
chr1 (289-342)||(6573994-6574047)
chr1 (243-341)||(19637774-19637872)
chr1 (225-339)||(46348320-46348434)
chr1 (276-341)||(29415754-29415819)
chr1 (241-300)||(1486657-1486715)
chr1 (228-279)||(15323236-15323287)
chr1 (284-341)||(7988446-7988504)
chr1 (228-317)||(9690213-9690303)
chr1 (241-279)||(18190061-18190099)
chr1 (226-339)||(22515825-22515938)
chr1 (240-281)||(23219615-23219656)
chr1 (296-339)||(12040690-12040734)
chr1 (305-337)||(28676183-28676215)
chr1 (296-340)||(39101190-39101234)
chr1 (291-342)||(48415728-48415780)
[»] chr6 (20 HSPs)
chr6 (288-342)||(6389748-6389802)
chr6 (288-341)||(19602181-19602234)
chr6 (288-342)||(34446570-34446624)
chr6 (288-341)||(17168463-17168516)
chr6 (254-342)||(12235485-12235573)
chr6 (228-279)||(8776908-8776959)
chr6 (296-338)||(2153895-2153937)
chr6 (287-352)||(12086344-12086409)
chr6 (228-339)||(34595142-34595253)
chr6 (227-294)||(28152152-28152218)
chr6 (296-339)||(30781302-30781345)
chr6 (296-342)||(6299517-6299563)
chr6 (296-342)||(6306327-6306373)
chr6 (228-337)||(13364645-13364754)
chr6 (288-342)||(26247431-26247485)
chr6 (299-352)||(7625117-7625170)
chr6 (294-334)||(4420185-4420225)
chr6 (241-277)||(8389421-8389457)
chr6 (241-277)||(31959220-31959256)
chr6 (296-340)||(34895042-34895086)
[»] chr2 (19 HSPs)
chr2 (284-342)||(12748689-12748747)
chr2 (288-341)||(23354652-23354705)
chr2 (288-340)||(25544488-25544540)
chr2 (241-341)||(24011042-24011148)
chr2 (226-339)||(18840951-18841064)
chr2 (228-341)||(34006930-34007044)
chr2 (296-341)||(23355003-23355048)
chr2 (302-352)||(8817470-8817520)
chr2 (291-341)||(10535762-10535812)
chr2 (302-340)||(22085011-22085049)
chr2 (228-294)||(27084323-27084388)
chr2 (288-342)||(30563414-30563468)
chr2 (228-294)||(37419808-37419873)
chr2 (291-341)||(38919212-38919262)
chr2 (288-337)||(11308004-11308053)
chr2 (288-341)||(19573984-19574037)
chr2 (296-340)||(4229416-4229460)
chr2 (228-276)||(19980746-19980794)
chr2 (301-341)||(31026701-31026741)
[»] scaffold0199 (1 HSPs)
scaffold0199 (248-353)||(1943-2048)
[»] scaffold0598 (1 HSPs)
scaffold0598 (288-342)||(8053-8107)
[»] scaffold0778 (1 HSPs)
scaffold0778 (300-341)||(4412-4453)
[»] scaffold0652 (1 HSPs)
scaffold0652 (241-278)||(415-452)
[»] scaffold0053 (1 HSPs)
scaffold0053 (243-339)||(8806-8902)
[»] scaffold0049 (1 HSPs)
scaffold0049 (296-337)||(56932-56973)
[»] scaffold0361 (1 HSPs)
scaffold0361 (228-339)||(14538-14646)


Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 13 - 492
Target Start/End: Original strand, 39506839 - 39507323
Alignment:
Q  13 gtgagatgaatctatgcccggttcatacatgtttatgaacatgtggtgatgtgattnnnnnnnnnnnnncactcaaattaatgattctaagtcatggaat 112  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||| ||||||||||||||||||||    
T  39506839 gtgaaatgaatctatgcccggttcatacatgtttatgaacatgtggtgatgtgattaaaaatgaaaaaacactcaaatttatgattctaagtcatggaat 39506938  T
Q  113 aaaaaacgaatgtgnnnnnnnacatgtgtgacaaattata-------gtaacaaggtgattcaagaggtctcttgttgtccaannnnnnnatgaatctta 205  Q
    ||||||||||||||       |||||||||||||||||||       ||||||||||||||||||||||||  ||||||||||       ||||||||||    
T  39506939 aaaaaacgaatgtgtttttttacatgtgtgacaaattatataaaccagtaacaaggtgattcaagaggtct--tgttgtccaatttttttatgaatctta 39507036  T
Q  206 gtgtcttaattatatcaaaaaactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatga 305  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  39507037 gtgtcttaattaaatcaaaaaactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacataacacctatga 39507136  T
Q  306 ttacacttaattatatcattttcttaaattattatccttgttgacgtatcgatattcaggtcgtgtctaatgtttgtgtctgtggttcatagtcaacaaa 405  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||    
T  39507137 ttacacttaattatatcattttcataaattattatccttattgacgtatcggtattcaagtcgtgtctaatgtttgtgtatgtggttcatagtcaacaaa 39507236  T
Q  406 caacgttaagatttatatcacacatatatccctgagtaagcagtaacaataaactagacaggatcatgataatgatactatatggtt 492  Q
    |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39507237 caacgttaagatttatatcaaacatatataccagagtaagcagtaacaataaactagacaggatcatgataatgatactatatggtt 39507323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 3144652 - 3144706
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  3144652 ccgacacgacacctatgattacactaaattatatcattttctgaaattattatcc 3144706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 20743278 - 20743332
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  20743278 ccgacacaacacctatgattacactgaattatgtcattttctcaaattattatcc 20743332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 338
Target Start/End: Original strand, 49659502 - 49659573
Alignment:
Q  268 tgtcggacacgtatcagtgtccgacac-aacacctatgattacacttaattatatcattttcttaaattatt 338  Q
    |||||| ||||| || ||||||||||| || ||||||||||||||| |||||||||||||||| ||||||||    
T  49659502 tgtcgggcacgtgtcggtgtccgacaccaaaacctatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 342
Target Start/End: Complemental strand, 24343632 - 24343512
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtc------cgacacaacacctatgattacacttaattatat 321  Q
    ||||||||||   ||||||||| ||||||| ||||| ||||||||||||||  || |||||      |||||| |||||||| |||||||| |||||| |    
T  24343632 ctatgaagcacggacactcctcagaataggcgtgtcccggtgtcggacacgcgtcggtgtcggacaccgacacgacacctataattacactgaattatgt 24343533  T
Q  322 cattttcttaaattattatcc 342  Q
     ||||||| ||||||||||||    
T  24343532 aattttctcaaattattatcc 24343512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 296 - 389
Target Start/End: Original strand, 34515882 - 34515975
Alignment:
Q  296 acacctatgattacacttaattatatcattttcttaaattattatccttgttgacgtatcgatattcaggtcgtgtctaatgtttgtgtctgtg 389  Q
    ||||||||| ||||||| |||||| |||||||||| ||||||||||| ||| ||||| ||  | |||  || |||||| |||||||||||||||    
T  34515882 acacctatgtttacactgaattatgtcattttcttgaattattatccgtgtcgacgtgtcagtgttcgtgttgtgtctgatgtttgtgtctgtg 34515975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 53381530 - 53381596
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 294  Q
    ||||||||||   |||||||||||| |||||||||| |||||||||| |||  ||||||||||||||    
T  53381530 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggatacgcgtcagtgtccgacac 53381596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 7424716 - 7424676
Alignment:
Q  301 tatgattacacttaattatatcattttcttaaattattatc 341  Q
    |||||||||||| |||||||| |||||||||||||||||||    
T  7424716 tatgattacactcaattatattattttcttaaattattatc 7424676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 31243556 - 31243600
Alignment:
Q  296 acacctatgattacacttaattatatcattttcttaaattattat 340  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||||    
T  31243556 acacctatgattacactgaattatgtcattttctcaaattattat 31243600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 19482798 - 19482747
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgt 279  Q
    ||||||||||  ||||||||||||| |||||||||| | |||||||||||||    
T  19482798 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgt 19482747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 23292925 - 23292991
Alignment:
Q  227 actatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 294  Q
    |||||||||||   |||||||||||| |||| ||||| ||||||||||||||| || |||||||||||    
T  23292925 actatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacac 23292991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 299
Target Start/End: Original strand, 3947714 - 3947771
Alignment:
Q  241 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacac 299  Q
    |||||||||||| ||||||||||  |||||||||||||| || ||||||||||| ||||    
T  3947714 acactcctcggattaggtgtgtcctggtgtcggacacgtgtc-gtgtccgacacgacac 3947771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 16402195 - 16402265
Alignment:
Q  272 ggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    |||||||| |||||||||||||| ||| |||| ||||||||  || || | ||||||| ||||||||||||    
T  16402195 ggacacgtgtcagtgtccgacacgacagctataattacactgtatcatgttattttctcaaattattatcc 16402265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 32910610 - 32910556
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    |||||| |||||| || |||||||| |||||| ||||||||| ||||||||||||    
T  32910610 ccgacataacacccataattacactgaattatgtcattttctcaaattattatcc 32910556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 34306744 - 34306809
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 294  Q
    ||||||||||  |||| ||||| || |||| ||||||||||||||||||||| || |||||||||||    
T  34306744 ctatgaagcacgaacattcctcagattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacac 34306809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 271
Target Start/End: Original strand, 25950470 - 25950515
Alignment:
Q  226 aactatgaagcagtaacactcctcggaataggtgtgtctcggtgtc 271  Q
    ||||||||||||   |||||||||||| ||||||||||||||||||    
T  25950470 aactatgaagcatggacactcctcggattaggtgtgtctcggtgtc 25950515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 50848310 - 50848355
Alignment:
Q  295 aacacctatgattacacttaattatatcattttcttaaattattat 340  Q
    |||||||| ||||||||| |||||||||||||| | ||||||||||    
T  50848310 aacacctacgattacactgaattatatcattttttcaaattattat 50848355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 341
Target Start/End: Original strand, 30520438 - 30520490
Alignment:
Q  290 gacacaacacctatgattacacttaattatatcattttctt-aaattattatc 341  Q
    ||||| ||||||||||||||||| |||||| ||||||| || |||||||||||    
T  30520438 gacactacacctatgattacactgaattatgtcatttttttcaaattattatc 30520490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 53968605 - 53968553
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 340  Q
    ||||||| ||| |||||||  |||| |||||| ||||||||||||||||||||    
T  53968605 ccgacacgacatctatgatatcactgaattatgtcattttcttaaattattat 53968553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 228 - 340
Target Start/End: Complemental strand, 39820547 - 39820436
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 327  Q
    ||||||||||   ||||| |||||| |||| ||||| || |||||||||||  || ||||||||||| ||||||||||||||||| ||||||||||||||    
T  39820547 ctatgaagcacggacacttctcggattaggcgtgtcccg-tgtcggacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcatttt 39820449  T
Q  328 cttaaattattat 340  Q
    || ||||||||||    
T  39820448 ctcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 353
Target Start/End: Complemental strand, 1676811 - 1676706
Alignment:
Q  248 tcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgtt 347  Q
    ||||| |||||||||   |||||| |||| || || ||||||||||| ||||||||||||||||| || ||| ||||||||  |||||||||||| |||     
T  1676811 tcggattaggtgtgtgcaggtgtcagacatgtgtcggtgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtc 1676712  T
Q  348 gacgta 353  Q
    ||||||    
T  1676711 gacgta 1676706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 35431137 - 35431194
Alignment:
Q  285 tgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    |||||||||| ||||||||||||||||| || ||| ||||||||| ||||||||||||    
T  35431137 tgtccgacacgacacctatgattacactaaaatatgtcattttctcaaattattatcc 35431194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 339
Target Start/End: Original strand, 31580079 - 31580178
Alignment:
Q  240 aacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattatt 338  Q
    ||||| ||||||| ||||||||| ||||||||| ||| || || | |||||||| | |||||||| |||||||| |||||| | ||||||||||||||||    
T  31580079 aacacccctcggattaggtgtgtttcggtgtcgaacatgtgtc-gcgtccgacatcgacacctataattacactcaattatgtgattttcttaaattatt 31580177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 9936870 - 9936820
Alignment:
Q  291 acacaacacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    ||||||||| |||||||| | | ||||||||||||||||||||||||||||    
T  9936870 acacaacacatatgattatattgaattatatcattttcttaaattattatc 9936820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 13845291 - 13845241
Alignment:
Q  290 gacacaacacctatgattacacttaattatatcattttcttaaattattat 340  Q
    ||||| |||||||||||||| || |||||||||||||||| ||||||||||    
T  13845291 gacacgacacctatgattactctaaattatatcattttctcaaattattat 13845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 342
Target Start/End: Original strand, 30067968 - 30068082
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 327  Q
    ||||||||||   |||||| ||||| |||||||||| | |||||||||||   || || |||||| |  |||||| ||||| ||| |||||| |||||||    
T  30067968 ctatgaagcacggacactcatcggattaggtgtgtcccagtgtcggacacacgtcggtatccgactcggcacctacgattatactgaattatgtcatttt 30068067  T
Q  328 cttaaattattatcc 342  Q
    || ||||||||||||    
T  30068068 ctcaaattattatcc 30068082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 339
Target Start/End: Original strand, 12559053 - 12559157
Alignment:
Q  241 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacc------tatgattacacttaattatatcattttcttaaat 334  Q
    |||||||| ||| ||| |||||| || |||||||||||| || |||||||| |  |||||      |||||||||||| |||||||||||||||| ||||    
T  12559053 acactcctgggattagatgtgtcccgttgtcggacacgtgtcggtgtccgagatgacaccaatacatatgattacactgaattatatcattttctcaaat 12559152  T
Q  335 tatta 339  Q
    |||||    
T  12559153 tatta 12559157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 337
Target Start/End: Complemental strand, 26507487 - 26507450
Alignment:
Q  300 ctatgattacacttaattatatcattttcttaaattat 337  Q
    |||||||||||||||||||||| |||||||||||||||    
T  26507487 ctatgattacacttaattatattattttcttaaattat 26507450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 44067633 - 44067574
Alignment:
Q  241 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacc 300  Q
    |||||||||| | |||| |||||  ||||||||||||| ||||||||||||||| |||||    
T  44067633 acactcctcgaattaggcgtgtcctggtgtcggacacgcatcagtgtccgacacgacacc 44067574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 13009493 - 13009547
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||||| |||| |||||||||||| ||||||||  |||||| ||||||||||||    
T  13009493 ccgacacgacacttatgattacactaaattatattgttttctcaaattattatcc 13009547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 29510233 - 29510283
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacg 278  Q
    ||||||||||   |||||||||||| |||||||||| ||||||||||||||    
T  29510233 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacg 29510283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 28883886 - 28883930
Alignment:
Q  296 acacctatgattacacttaattatatcattttcttaaattattat 340  Q
    |||||||||||| |||| |||||| ||||||||| ||||||||||    
T  28883886 acacctatgattccactgaattatgtcattttctcaaattattat 28883930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 40064010 - 40063958
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 340  Q
    ||||||| || |||||||||||| | |||||| ||||||||| ||||||||||    
T  40064010 ccgacacgacgcctatgattacaatgaattatgtcattttctcaaattattat 40063958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 224 - 348
Target Start/End: Original strand, 7997102 - 7997226
Alignment:
Q  224 aaaactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatca 323  Q
    ||||| ||||||||  |||||| |||| | ||||||||||  | |||||||||||  |||||||||||||| |||| ||| ||||||||  |||||||||    
T  7997102 aaaacaatgaagcacaaacacttctcgaattaggtgtgtcctgatgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatatca 7997201  T
Q  324 ttttcttaaattattatccttgttg 348  Q
    |||||| |||||||||||| |||||    
T  7997202 ttttctcaaattattatccgtgttg 7997226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 43554580 - 43554528
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 340  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  43554580 ccgacacgacacctatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 288 - 338
Target Start/End: Original strand, 39695999 - 39696049
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattatt 338  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||    
T  39695999 ccgacacgacacctatgattacactaaattatatcattttctcaaattatt 39696049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 341
Target Start/End: Original strand, 32630675 - 32630788
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac-aacacctatgattacacttaattatatcattt 326  Q
    ||||||||||   |||||||||| | ||||||||||||  |||||||||||| || || ||||||||  |||| ||| |||||| | |||||||| ||||    
T  32630675 ctatgaagcatagacactcctcgaattaggtgtgtctcaatgtcggacacgtgtc-gtatccgacactgacacatataattacattgaattatataattt 32630773  T
Q  327 tcttaaattattatc 341  Q
    ||| |||||||||||    
T  32630774 tctcaaattattatc 32630788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 19293430 - 19293475
Alignment:
Q  295 aacacctatgattacacttaattatatcattttcttaaattattat 340  Q
    ||||| ||||||||||||||||||| | ||||||||||||||||||    
T  19293430 aacacatatgattacacttaattatgttattttcttaaattattat 19293475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 290 - 358
Target Start/End: Complemental strand, 25863261 - 25863193
Alignment:
Q  290 gacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttgacgtatcgat 358  Q
    ||||| |||| ||| |||||||| |||||||||||||||| |||||||||| | ||| ||||| |||||    
T  25863261 gacacgacacttataattacactgaattatatcattttctcaaattattatacatgtcgacgtgtcgat 25863193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 338
Target Start/End: Complemental strand, 29365058 - 29365015
Alignment:
Q  295 aacacctatgattacacttaattatatcattttcttaaattatt 338  Q
    ||||||| |||||||| ||||||||| |||||||||||||||||    
T  29365058 aacacctgtgattacatttaattataccattttcttaaattatt 29365015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 2437030 - 2436980
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacg 278  Q
    ||||||||||  ||||||||||||| |||| |||||| |||||||||||||    
T  2437030 ctatgaagcacgaacactcctcggattaggcgtgtcttggtgtcggacacg 2436980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 338
Target Start/End: Complemental strand, 26312875 - 26312778
Alignment:
Q  241 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattatt 338  Q
    |||||||||||| ||||||||||  |||||| |||||||||| |||||||||| | | || ||| |||||||| |||||  | ||||||| ||||||||    
T  26312875 acactcctcggattaggtgtgtcctggtgtcagacacgtatc-gtgtccgacaccgatacatataattacactgaattaattgattttctcaaattatt 26312778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 341
Target Start/End: Original strand, 2577145 - 2577233
Alignment:
Q  254 taggtgtgtctcggtgtcggacacgtatcagtgtccgacac---aacacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    |||||| |||| ||||||||||||  ||| || ||||||||   ||||  |||||||||||| |||||| ||||||||| |||||||||||    
T  2577145 taggtgagtcttggtgtcggacacacatcggtatccgacaccggaaca--tatgattacactaaattatgtcattttctcaaattattatc 2577233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 339
Target Start/End: Original strand, 15410454 - 15410499
Alignment:
Q  294 caacacctatgattacacttaattatatcattttcttaaattatta 339  Q
    |||||| |||||||||||| ||| |||| |||||||||||||||||    
T  15410454 caacacatatgattacactgaatcatataattttcttaaattatta 15410499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 18162097 - 18162060
Alignment:
Q  305 attacacttaattatatcattttcttaaattattatcc 342  Q
    |||||||| |||||| ||||||||||||||||||||||    
T  18162097 attacactgaattatgtcattttcttaaattattatcc 18162060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 339
Target Start/End: Complemental strand, 31264495 - 31264446
Alignment:
Q  290 gacacaacacctatgattacacttaattatatcattttcttaaattatta 339  Q
    ||||| |||| |||||||||||| |||||| ||||||||| |||||||||    
T  31264495 gacacgacacttatgattacactgaattatgtcattttctcaaattatta 31264446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 342
Target Start/End: Original strand, 18607099 - 18607151
Alignment:
Q  290 gacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||| ||||||||||||||| | |||||| | ||||||| ||||||||||||    
T  18607099 gacacgacacctatgattacattgaattatgttattttctcaaattattatcc 18607151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 21577117 - 21577161
Alignment:
Q  297 cacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    ||||||| ||||||||||||||| | ||||||| |||||||||||    
T  21577117 cacctattattacacttaattatgttattttctcaaattattatc 21577161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 38464313 - 38464361
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggaca 276  Q
    ||||||||||   |||||||||||| |||||||||| ||||||||||||    
T  38464313 ctatgaagcacagacactcctcggattaggtgtgtcccggtgtcggaca 38464361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 342
Target Start/End: Complemental strand, 42469270 - 42469226
Alignment:
Q  298 acctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||||||||||||| || ||| ||||||||| ||||||||||||    
T  42469270 acctatgattacactaaaatatgtcattttctcaaattattatcc 42469226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 348
Target Start/End: Original strand, 25651969 - 25652091
Alignment:
Q  232 gaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtcc------gacacaacacctatgattacacttaattatatcatt 325  Q
    |||||| | |||||| ||||| ||||||||||||||||||| |||||| || ||||||      |||||||||||||| | |||||| ||||||||||||    
T  25651969 gaagcactgacactcttcggattaggtgtgtctcggtgtcgaacacgtgtcggtgtccaacactgacacaacacctataactacactgaattatatcatt 25652068  T
Q  326 ttcttaaattattatccttgttg 348  Q
    |||| |||||||||||| |||||    
T  25652069 ttctcaaattattatccgtgttg 25652091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 242 - 326
Target Start/End: Complemental strand, 12100374 - 12100290
Alignment:
Q  242 cactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattt 326  Q
    ||||||||||| |||||||||| ||||||||||||||  | |||||| ||||| |||||||| |||||||| |||||||||||||    
T  12100374 cactcctcggactaggtgtgtcccggtgtcggacacgcgttagtgtcagacacgacacctattattacactgaattatatcattt 12100290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 267 - 342
Target Start/End: Complemental strand, 15864913 - 15864838
Alignment:
Q  267 gtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||| ||||||| || ||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||    
T  15864913 gtgtcagacacgtgtcggtgtccgacacgacacctatgattacactaaattatatcattttttcaaattattatcc 15864838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 241 - 342
Target Start/End: Original strand, 24204994 - 24205095
Alignment:
Q  241 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattat 340  Q
    |||||||||| | |||| |||||  |||||||||||||  |||||||||||||| |||| ||| ||||||||  ||||| ||||||||| ||||||||||    
T  24204994 acactcctcgaattaggcgtgtcctggtgtcggacacgcgtcagtgtccgacacgacacttataattacactgtattatgtcattttctcaaattattat 24205093  T
Q  341 cc 342  Q
    ||    
T  24205094 cc 24205095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 341
Target Start/End: Complemental strand, 25074914 - 25074795
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtc------cgacacaacacctatgattacacttaattatat 321  Q
    ||||||||||  ||||||||||||| |||||||||| | ||||||||||||  |  |||||      ||||||||| |||||||||||||| |||||| |    
T  25074914 ctatgaagcacgaacactcctcggattaggtgtgtcccagtgtcggacacgcgttggtgtcagacaccgacacaacgcctatgattacactcaattatgt 25074815  T
Q  322 cattttcttaaattattatc 341  Q
    |||||||| |||||||||||    
T  25074814 cattttctcaaattattatc 25074795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 25892517 - 25892467
Alignment:
Q  290 gacacaacacctatgattacacttaattatatcattttcttaaattattat 340  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  25892517 gacacgacacctatgattacactgaattatatcattttcttaaattattat 25892467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 228 - 340
Target Start/End: Original strand, 3730108 - 3730217
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 327  Q
    ||||||||||   |||||||||||| |||||||||| |||||   |||| | ||  ||||| ||||| ||||||||||||||||| |||||| ||||| |    
T  3730108 ctatgaagcatggacactcctcggattaggtgtgtcccggtg---gacatgcattggtgtcagacacgacacctatgattacactgaattatgtcattat 3730204  T
Q  328 cttaaattattat 340  Q
    || ||||||||||    
T  3730205 ctcaaattattat 3730217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 339
Target Start/End: Complemental strand, 55401194 - 55401083
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 326  Q
    ||||||||||   |||||||||||| |||| ||||||||||||||||||||| || |||||||||| | |||| | | |||||||| |||||| | ||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacacttgtaattacactaaattatgtgattt 55401096  T
Q  327 tcttaaattatta 339  Q
    | | |||||||||    
T  55401095 tttcaaattatta 55401083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 296 - 339
Target Start/End: Complemental strand, 1830394 - 1830351
Alignment:
Q  296 acacctatgattacacttaattatatcattttcttaaattatta 339  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  1830394 acacctatgattacactgaattatgtcattttcttaaattatta 1830351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 288 - 350
Target Start/End: Complemental strand, 27903691 - 27903629
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttgac 350  Q
    |||||||||||| |||||||||| | ||||||||| |||||| |||||||||||  |||||||    
T  27903691 ccgacacaacacttatgattacattaaattatatcgttttctcaaattattatctgtgttgac 27903629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 342
Target Start/End: Complemental strand, 25365564 - 25365467
Alignment:
Q  245 tcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||| || |||| |||||  ||||||| ||||  ||| ||||||||||| |||| |||||||||||  |||||| |||| |||| ||||||||||||    
T  25365564 tcctcagattaggcgtgtcctggtgtcgaacacacatcggtgtccgacacgacacttatgattacaccgaattatgtcatattctcaaattattatcc 25365467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 12704657 - 12704717
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttg 348  Q
    ||||||| ||||||||||||||| | |||||| ||||||| | |||||||||||| |||||    
T  12704657 ccgacacgacacctatgattacattgaattatgtcattttttcaaattattatccgtgttg 12704717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 40052431 - 40052380
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgt 279  Q
    ||||||||||  ||||||||||||| |||| ||||| |||||||||||||||    
T  40052431 ctatgaagcacgaacactcctcggattaggcgtgtcccggtgtcggacacgt 40052380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 291
Target Start/End: Complemental strand, 52369906 - 52369843
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccga 291  Q
    ||||||||||   ||||||||||||||||||||||| |||||| |||||||  || ||||||||    
T  52369906 ctatgaagcacggacactcctcggaataggtgtgtcccggtgttggacacgcgtcggtgtccga 52369843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 52369834 - 52369780
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||||| ||||||||||||||| | |||||| | ||||||| ||||||||||||    
T  52369834 ccgacacgacacctatgattacattgaattatgtaattttctcaaattattatcc 52369780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 339
Target Start/End: Complemental strand, 10955056 - 10954960
Alignment:
Q  243 actcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattatta 339  Q
    |||||||||| |||| ||||| | ||||||||||||| || |||||||||| | |||| | |||||||||| |||||| | ||||| | |||||||||    
T  10955056 actcctcggattaggcgtgtcccagtgtcggacacgtgtc-gtgtccgacaccgacacttgtgattacactgaattatgtgattttttcaaattatta 10954960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 14223853 - 14223906
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    ||||||| |||| ||||| |||||| ||||||||| |||||| |||||||||||    
T  14223853 ccgacacgacacttatgaatacactaaattatatcgttttctcaaattattatc 14223906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 20691370 - 20691325
Alignment:
Q  296 acacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    |||| |||||||||||| |||||| ||||||||| |||||||||||    
T  20691370 acacatatgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 341
Target Start/End: Complemental strand, 21149169 - 21149073
Alignment:
Q  245 tcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    |||||||| ||||||||| |||||||| |||||   |  |||||||||| | ||| || |||||||||| |||||| ||||||||| |||||||||||    
T  21149169 tcctcggattaggtgtgt-tcggtgtcagacacacgttggtgtccgacaacgacatctttgattacactgaattatgtcattttctcaaattattatc 21149073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 40150579 - 40150624
Alignment:
Q  296 acacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    |||| |||||||||| | |||||||||||||||| |||||||||||    
T  40150579 acacatatgattacattgaattatatcattttctcaaattattatc 40150624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 339
Target Start/End: Original strand, 40993275 - 40993387
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatca-tt 325  Q
    ||||||||||   |||||||||||| |||| ||||| |||||||||||| || || |||||||||| | |||| ||| |||||||| |||||| | | ||    
T  40993275 ctatgaagcatggacactcctcggattaggcgtgtcccggtgtcggacatgtgtc-gtgtccgacaccgacacatataattacactgaattatgtgattt 40993373  T
Q  326 ttcttaaattatta 339  Q
    || |||||||||||    
T  40993374 tttttaaattatta 40993387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 327
Target Start/End: Complemental strand, 7171620 - 7171521
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 326  Q
    ||||||||||   |||||||| ||| |||| ||||| ||||||||||||||| || |||||||||| |||||| | | |||||||  |||||||| ||||    
T  7171620 ctatgaagcatatacactccttggattaggcgtgtcgcggtgtcggacacgtgtc-gtgtccgacaccaacacttgtaattacaccgaattatatgattt 7171522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 8e-19; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 241 - 341
Target Start/End: Complemental strand, 12278941 - 12278841
Alignment:
Q  241 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattat 340  Q
    |||||||| ||| |||||||||| ||||||| ||||||  |  ||||||||||| |||| ||| |||||||| |||||| ||||||||||||||||||||    
T  12278941 acactcctaggattaggtgtgtcccggtgtcagacacgcgttggtgtccgacacgacacatataattacactgaattatgtcattttcttaaattattat 12278842  T
Q  341 c 341  Q
    |    
T  12278841 c 12278841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 267 - 342
Target Start/End: Complemental strand, 23751980 - 23751905
Alignment:
Q  267 gtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||| ||||||  || ||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||    
T  23751980 gtgtctgacacgcgtcggtgtccgacacgacacctatgattacactaaattatatcattttatcaaattattatcc 23751905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 288 - 340
Target Start/End: Original strand, 29812664 - 29812716
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 340  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  29812664 ccgacacgacacctatgattacactaaattatatcattttctcaaattattat 29812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 23930278 - 23930224
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||||||||||||||||||||||| |||||| ||||||||| |||||| |||||    
T  23930278 ccgacacaacacctatgattacactgaattatgtcattttctcaaattactatcc 23930224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 337
Target Start/End: Original strand, 7133210 - 7133327
Alignment:
Q  226 aactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac------aacacctatgattacacttaattat 319  Q
    ||||||||||||   || |||||| || |||||||||| | ||||||||||||  || |||||||||||      | |||||||||||||||| ||||||    
T  7133210 aactatgaagcacggacgctcctcagattaggtgtgtcccagtgtcggacacgcgtcggtgtccgacaccgacacaccacctatgattacactgaattat 7133309  T
Q  320 atcattttcttaaattat 337  Q
     ||||||||| |||||||    
T  7133310 gtcattttctcaaattat 7133327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 17852120 - 17852056
Alignment:
Q  227 actatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgac 292  Q
    |||||||||||   |||||||||| | |||||||||||||||||||||||||| ||| ||||||||    
T  17852120 actatgaagcacggacactcctcgaattaggtgtgtctcggtgtcggacacgtgtca-tgtccgac 17852056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 292 - 341
Target Start/End: Complemental strand, 32855409 - 32855360
Alignment:
Q  292 cacaacacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    |||||||| |||||||||| | ||||| ||||||||||||||||||||||    
T  32855409 cacaacacatatgattacattcaattaaatcattttcttaaattattatc 32855360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 300
Target Start/End: Original strand, 5409771 - 5409842
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacc 300  Q
    ||||||||||   |||||||||||| |||| ||||| ||||||||||||||| || ||||||||||| |||||    
T  5409771 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacacgacacc 5409842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 339
Target Start/End: Complemental strand, 15680928 - 15680817
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 326  Q
    ||||||||||   |||||||||| | |||  ||||||||||||||||||||| || |||||||||| | |||| ||| |||||||| |||||| | ||||    
T  15680928 ctatgaagcacggacactcctcgaattagacgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacacttataattacactaaattatgtgattt 15680830  T
Q  327 tcttaaattatta 339  Q
    | || ||||||||    
T  15680829 tttttaattatta 15680817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 4017797 - 4017848
Alignment:
Q  291 acacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    |||| |||| |||||||||||| ||||||||| |||||| ||||||||||||    
T  4017797 acacgacacttatgattacactaaattatatcgttttctcaaattattatcc 4017848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 22683758 - 22683809
Alignment:
Q  291 acacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    |||| |||||||||||| |||| ||||||||||| |||| ||||||||||||    
T  22683758 acacgacacctatgattgcactgaattatatcatattctcaaattattatcc 22683809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 32093952 - 32094026
Alignment:
Q  226 aactatgaagcagtaacactcctcggaataggtgtgt-ctcggtgtcggacacgtatcagtgtccgacacaacacc 300  Q
    ||||||||||||  ||||||||||||| |||| |||| | ||||||||||||||| || ||||||||||| |||||    
T  32093952 aactatgaagcacgaacactcctcggattaggcgtgtccccggtgtcggacacgtgtc-gtgtccgacacgacacc 32094026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 276
Target Start/End: Complemental strand, 32308249 - 32308202
Alignment:
Q  229 tatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggaca 276  Q
    |||||||||  ||||||||||||| ||| |||||||||||||||||||    
T  32308249 tatgaagcatgaacactcctcggattagctgtgtctcggtgtcggaca 32308202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 17780084 - 17780138
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||||| |||||||| ||||||   |||||| ||||||||||||||||||||||    
T  17780084 ccgacacgacacctattattacatagaattatgtcattttcttaaattattatcc 17780138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 32287416 - 32287468
Alignment:
Q  241 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 294  Q
    |||||||||||| |||||||||| ||||||||||||| | ||| ||||||||||    
T  32287416 acactcctcggattaggtgtgtcccggtgtcggacacttgtca-tgtccgacac 32287468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 339
Target Start/End: Complemental strand, 598327 - 598216
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 326  Q
    ||||||||||   ||||| |||||| |||| ||||| ||||||||||||||| || ||||| |||| | |||| ||  |||||| |||||||  | ||||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtctgacaccgacacttacaattacatttaattacgtgattt 598229  T
Q  327 tcttaaattatta 339  Q
    |||||||||||||    
T  598228 tcttaaattatta 598216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 228 - 352
Target Start/End: Original strand, 22794018 - 22794142
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 327  Q
    ||||||||||   |||||||||| | |||||||||| ||| |||||||| |  |||||||| ||||| |||||||| ||||||||  ||||| |||||||    
T  22794018 ctatgaagcacgtacactcctcgaattaggtgtgtcccggagtcggacatgcgtcagtgtcggacacgacacctataattacactgtattatgtcatttt 22794117  T
Q  328 cttaaattattatccttgttgacgt 352  Q
     | |||||||||||| |||||||||    
T  22794118 ttcaaattattatccgtgttgacgt 22794142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 42004947 - 42005001
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  42004947 ccgacacaacacctatgattacactaaattatgtcattttctcaaattattatcc 42005001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 6936402 - 6936461
Alignment:
Q  290 gacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttga 349  Q
    ||||| |||||||||||||||||||||||| ||||||||| | |||||||||| ||||||    
T  6936402 gacacgacacctatgattacacttaattatgtcattttctcagattattatccgtgttga 6936461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 289 - 342
Target Start/End: Complemental strand, 6574047 - 6573994
Alignment:
Q  289 cgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    |||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||    
T  6574047 cgacacaacacctatgattacactaaattatatcattgtctcaaattatcatcc 6573994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 243 - 341
Target Start/End: Complemental strand, 19637872 - 19637774
Alignment:
Q  243 actcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacaca-acacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    |||||||||| |||| | ||| |||||||||| | ||||| |||||||||||  |||| |||||||||| | ||| || |||||||||||||||||||||    
T  19637872 actcctcggattaggggcgtcccggtgtcggatatgtatc-gtgtccgacaccgacacatatgattacattgaataatgtcattttcttaaattattatc 19637774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 225 - 339
Target Start/End: Original strand, 46348320 - 46348434
Alignment:
Q  225 aaactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatca 323  Q
    |||||||||||||   |||| |||||||  ||| ||||||||||||||||||||| || |||||||||| | |||| | | |||||||| |||||||| |    
T  46348320 aaactatgaagcacggacacacctcggatcaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacacttgtaattacactaaattatatga 46348418  T
Q  324 ttttcttaaattatta 339  Q
    |||| | |||||||||    
T  46348419 ttttttcaaattatta 46348434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 276 - 341
Target Start/End: Complemental strand, 29415819 - 29415754
Alignment:
Q  276 acgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    |||| |||||||| |||||||||| | ||||||  || |||||| |||||||||||||||||||||    
T  29415819 acgtgtcagtgtctgacacaacacatgtgattatgctgaattatgtcattttcttaaattattatc 29415754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 1486657 - 1486715
Alignment:
Q  241 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacc 300  Q
    |||||||||||| |||| ||||| ||||||||||||||| || ||||||||||| |||||    
T  1486657 acactcctcggattaggcgtgtcccggtgtcggacacgtgtc-gtgtccgacacgacacc 1486715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 15323287 - 15323236
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgt 279  Q
    ||||||| || | |||||||||||| ||||||||| ||||||||||||||||    
T  15323287 ctatgaaacactgacactcctcggattaggtgtgtttcggtgtcggacacgt 15323236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 284 - 341
Target Start/End: Original strand, 7988446 - 7988504
Alignment:
Q  284 gtgtccgacac-aacacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    ||||||||||| ||||| |||||||||| | |||||| ||| |||||||||||||||||    
T  7988446 gtgtccgacaccaacacttatgattacattgaattatgtcactttcttaaattattatc 7988504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 317
Target Start/End: Original strand, 9690213 - 9690303
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgac-acaacacctatgattacacttaatt 317  Q
    ||||||||||  |||||||  |||| |||| ||||| ||||||||||||||| |||||| |||||  | |||| |||||||||||| ||||    
T  9690213 ctatgaagcacaaacactctccggattaggcgtgtcccggtgtcggacacgtgtcagtggccgacgccgacacatatgattacactgaatt 9690303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 241 - 279
Target Start/End: Original strand, 18190061 - 18190099
Alignment:
Q  241 acactcctcggaataggtgtgtctcggtgtcggacacgt 279  Q
    |||||||||||| |||||||||| |||||||||||||||    
T  18190061 acactcctcggattaggtgtgtcccggtgtcggacacgt 18190099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 226 - 339
Target Start/End: Original strand, 22515825 - 22515938
Alignment:
Q  226 aactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcat 324  Q
    ||||||||||||   |||||||||||| |||| |||||||||||||||| | || || |||||||||| | |||| | | |||||||| |||||| | ||    
T  22515825 aactatgaagcacggacactcctcggattaggcgtgtctcggtgtcggatatgtgtc-gtgtccgacaccgacacttgtaattacactaaattatgtgat 22515923  T
Q  325 tttcttaaattatta 339  Q
    ||| | |||||||||    
T  22515924 tttttcaaattatta 22515938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 281
Target Start/End: Original strand, 23219615 - 23219656
Alignment:
Q  240 aacactcctcggaataggtgtgtctcggtgtcggacacgtat 281  Q
    |||||| |||||| |||||||||| |||||||||||||||||    
T  23219615 aacacttctcggattaggtgtgtcacggtgtcggacacgtat 23219656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 12040690 - 12040734
Alignment:
Q  296 acacctatgattacacttaa-ttatatcattttcttaaattatta 339  Q
    ||||||||||||| ||| || ||||||||||||||||||||||||    
T  12040690 acacctatgattatactgaaattatatcattttcttaaattatta 12040734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 337
Target Start/End: Original strand, 28676183 - 28676215
Alignment:
Q  305 attacacttaattatatcattttcttaaattat 337  Q
    ||||||||||||||||| |||||||||||||||    
T  28676183 attacacttaattatattattttcttaaattat 28676215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 39101190 - 39101234
Alignment:
Q  296 acacctatgattacacttaattatatcattttcttaaattattat 340  Q
    |||||||| ||||||||||||||| | ||||||| ||||||||||    
T  39101190 acacctataattacacttaattatgttattttctcaaattattat 39101234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 291 - 342
Target Start/End: Original strand, 48415728 - 48415780
Alignment:
Q  291 acacaacacctatgattacacttaattatatcattttctt-aaattattatcc 342  Q
    |||| ||| ||||||||||||| |||||||||||||| || ||||||||||||    
T  48415728 acacgacatctatgattacactaaattatatcatttttttaaaattattatcc 48415780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 6389802 - 6389748
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||||    
T  6389802 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatcc 6389748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 19602181 - 19602234
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    ||||||||| ||||||||||||||| |||||||||||||||| |||||||||||    
T  19602181 ccgacacaatacctatgattacactgaattatatcattttctcaaattattatc 19602234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 34446624 - 34446570
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||||| ||||||||||||||||| |||||| ||||||||| ||||||||||||    
T  34446624 ccgacacgacacctatgattacactgaattatgtcattttctcaaattattatcc 34446570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 17168463 - 17168516
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    ||||||| |||||||| |||||||| |||||||||||||||| |||||||||||    
T  17168463 ccgacacgacacctattattacactaaattatatcattttctcaaattattatc 17168516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 342
Target Start/End: Original strand, 12235485 - 12235573
Alignment:
Q  254 taggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    |||| ||||| ||||| |||||||   || ||||| ||||| ||||||||||||||||| |||||| |||||||||  |||||||||||    
T  12235485 taggggtgtcccggtgccggacacacgtcggtgtcggacacgacacctatgattacactgaattatgtcattttctctaattattatcc 12235573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 228 - 279
Target Start/End: Original strand, 8776908 - 8776959
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgt 279  Q
    ||||||||||   |||||||||||| ||||||||||||||||||||||||||    
T  8776908 ctatgaagcacggacactcctcggattaggtgtgtctcggtgtcggacacgt 8776959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 338
Target Start/End: Original strand, 2153895 - 2153937
Alignment:
Q  296 acacctatgattacacttaattatatcattttcttaaattatt 338  Q
    |||||||| |||||||| |||||||||||||||||||||||||    
T  2153895 acacctataattacactaaattatatcattttcttaaattatt 2153937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 12086344 - 12086409
Alignment:
Q  287 tccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgttgacgt 352  Q
    |||||||| ||||||||||||| ||| |||||| ||||| ||| |||||||||||| ||| |||||    
T  12086344 tccgacacgacacctatgattaaactgaattatgtcattatctcaaattattatccgtgtcgacgt 12086409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 339
Target Start/End: Complemental strand, 34595253 - 34595142
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattt 326  Q
    ||||||||||   |||||||||||| |||||||||| ||||||| ||||||| || |||||||||| | |||| | | |||||||| |||||| | ||||    
T  34595253 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcagacacgtgtc-gtgtccgacaccgacacttgtaattacactgaattatgtgattt 34595155  T
Q  327 tcttaaattatta 339  Q
    | | |||||||||    
T  34595154 tttcaaattatta 34595142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 294
Target Start/End: Complemental strand, 28152218 - 28152152
Alignment:
Q  227 actatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 294  Q
    |||||||||||  ||||||||||||| ||||  |||| ||||||||||||||| || |||||||||||    
T  28152218 actatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacacgtgtc-gtgtccgacac 28152152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 30781302 - 30781345
Alignment:
Q  296 acacctatgattacacttaattatatcattttcttaaattatta 339  Q
    ||||||||||||||| |||||||| ||||||||| |||||||||    
T  30781302 acacctatgattacaattaattatgtcattttctcaaattatta 30781345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 6299563 - 6299517
Alignment:
Q  296 acacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    |||||||| |||||| | |||||||||||||||| ||||||||||||    
T  6299563 acacctatcattacattgaattatatcattttctcaaattattatcc 6299517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 6306373 - 6306327
Alignment:
Q  296 acacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    |||||||| |||||| | |||||||||||||||| ||||||||||||    
T  6306373 acacctatcattacattgaattatatcattttctcaaattattatcc 6306327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 337
Target Start/End: Original strand, 13364645 - 13364754
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacaca-acacctatgattacacttaattatatcattt 326  Q
    ||||||||||   |||||| |||||||||  |||||  |||||| |||| ||||| |||||| ||||  |||| |||||||||||| |||||||| ||||    
T  13364645 ctatgaagcacagacactcgtcggaatagacgtgtcctggtgtcagacatgtatc-gtgtccaacaccgacacatatgattacactgaattatatgattt 13364743  T
Q  327 tcttaaattat 337  Q
    ||| |||||||    
T  13364744 tctcaaattat 13364754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 26247485 - 26247431
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||||| | ||||||||||| ||| || ||| ||||||||||||||||||||||    
T  26247485 ccgacacgaaacctatgattatactaaaatatgtcattttcttaaattattatcc 26247431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 7625170 - 7625117
Alignment:
Q  299 cctatgattacacttaattatatcattttcttaaattattatccttgttgacgt 352  Q
    ||||| |||| ||| |||||||||||||||| |||||||||||| ||| |||||    
T  7625170 cctataattatactaaattatatcattttctcaaattattatccgtgtcgacgt 7625117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 294 - 334
Target Start/End: Original strand, 4420185 - 4420225
Alignment:
Q  294 caacacctatgattacacttaattatatcattttcttaaat 334  Q
    ||||||||||| ||||||| |||||||||||||||| ||||    
T  4420185 caacacctatggttacactgaattatatcattttctcaaat 4420225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 8389421 - 8389457
Alignment:
Q  241 acactcctcggaataggtgtgtctcggtgtcggacac 277  Q
    |||||||||||| |||||||||| |||||||||||||    
T  8389421 acactcctcggattaggtgtgtcccggtgtcggacac 8389457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 241 - 277
Target Start/End: Complemental strand, 31959256 - 31959220
Alignment:
Q  241 acactcctcggaataggtgtgtctcggtgtcggacac 277  Q
    |||||||||||| |||||||||| |||||||||||||    
T  31959256 acactcctcggattaggtgtgtcccggtgtcggacac 31959220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 34895042 - 34895086
Alignment:
Q  296 acacctatgattacacttaattatatcattttcttaaattattat 340  Q
    ||||||||||||||||| |||| ||| ||||||| ||||||||||    
T  34895042 acacctatgattacactgaattgtataattttctcaaattattat 34895086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 284 - 342
Target Start/End: Complemental strand, 12748747 - 12748689
Alignment:
Q  284 gtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||||||||||||||||||||||||||| || ||| ||||||||| ||||||||||||    
T  12748747 gtgtccgacacaacacctatgattacactgaactatgtcattttctcaaattattatcc 12748689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 341
Target Start/End: Original strand, 23354652 - 23354705
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    ||||||| ||||||||||||||||| |||||||||||||||| |||||||||||    
T  23354652 ccgacacgacacctatgattacactaaattatatcattttctcaaattattatc 23354705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 25544540 - 25544488
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattat 340  Q
    ||||||| ||||||||||||||||| |||||||||||||||| ||||||||||    
T  25544540 ccgacacgacacctatgattacactgaattatatcattttctcaaattattat 25544488  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 241 - 341
Target Start/End: Complemental strand, 24011148 - 24011042
Alignment:
Q  241 acactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacaca------acacctatgattacacttaattatatcattttcttaaat 334  Q
    |||||| ||||| || |||||||| ||||||||||||| ||| || || |||||       ||||||||||||||||| |||||| ||||||||| ||||    
T  24011148 acactcttcggattatgtgtgtcttggtgtcggacacgcatccgtatcagacaccgacgcgacacctatgattacactaaattatgtcattttctcaaat 24011049  T
Q  335 tattatc 341  Q
    |||||||    
T  24011048 tattatc 24011042  T

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Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 339
Target Start/End: Original strand, 18840951 - 18841064
Alignment:
Q  226 aactatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcat 324  Q
    ||||||||||||   |||||||||||| |||||||||| |||||||||||| || || ||||| |||| | |||| | | ||||||||||||||| | ||    
T  18840951 aactatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacatgtgtc-gtgtctgacaccgacacttgtaattacacttaattatgtaat 18841049  T
Q  325 tttcttaaattatta 339  Q
    ||| | |||||||||    
T  18841050 tttttcaaattatta 18841064  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 341
Target Start/End: Original strand, 34006930 - 34007044
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacaca-acacctatgattacacttaattatatcattt 326  Q
    ||||||||||   |||||||| | | |||||||||  ||||||| |||||| ||  |||||| ||||  ||||||||||||||||| |||||| ||| ||    
T  34006930 ctatgaagcacggacactccttgaattaggtgtgttccggtgtcagacacgaataggtgtcccacaccgacacctatgattacactgaattatgtcaatt 34007029  T
Q  327 tcttaaattattatc 341  Q
    ||| |||||||||||    
T  34007030 tctcaaattattatc 34007044  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 296 - 341
Target Start/End: Original strand, 23355003 - 23355048
Alignment:
Q  296 acacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    |||||||||||| |||| |||||||||||||||| |||||||||||    
T  23355003 acacctatgattgcactaaattatatcattttctcaaattattatc 23355048  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 352
Target Start/End: Original strand, 8817470 - 8817520
Alignment:
Q  302 atgattacacttaattatatcattttcttaaattattatccttgttgacgt 352  Q
    ||||||||||| ||||||| ||| ||||||||||||||||  |||||||||    
T  8817470 atgattacactgaattataccatgttcttaaattattatcggtgttgacgt 8817520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 341
Target Start/End: Original strand, 10535762 - 10535812
Alignment:
Q  291 acacaacacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    |||| |||| |||||||||||| |||||| ||||||||| |||||||||||    
T  10535762 acacgacacttatgattacactgaattatgtcattttctcaaattattatc 10535812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 22085049 - 22085011
Alignment:
Q  302 atgattacacttaattatatcattttcttaaattattat 340  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  22085049 atgattacactaaattatgtcattttcttaaattattat 22085011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 27084388 - 27084323
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 294  Q
    |||||||||||  ||||||||| || |||| |||||||||||| |||||||| || |||||||||||    
T  27084388 ctatgaagcagagacactcctccgattaggcgtgtctcggtgttggacacgtgtc-gtgtccgacac 27084323  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 342
Target Start/End: Complemental strand, 30563468 - 30563414
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||||||||||||||  ||||| | |||||| ||||||||| ||||||||||||    
T  30563468 ccgacacaacacctatagttacattgaattatgtcattttctcaaattattatcc 30563414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 294
Target Start/End: Complemental strand, 37419873 - 37419808
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacac 294  Q
    ||||||||||   |||||||||||| |||| ||||| |||||||||||||| ||| |||||||||||    
T  37419873 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacgcatc-gtgtccgacac 37419808  T

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Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 291 - 341
Target Start/End: Complemental strand, 38919262 - 38919212
Alignment:
Q  291 acacaacacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    |||| ||||||||||||||||| || |||| |||||||| |||||||||||    
T  38919262 acacgacacctatgattacactaaactataacattttctcaaattattatc 38919212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 337
Target Start/End: Original strand, 11308004 - 11308053
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattat 337  Q
    ||||||| ||||||||||||||||| |||||| ||||||| | |||||||    
T  11308004 ccgacacgacacctatgattacactgaattatgtcattttttcaaattat 11308053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 19574037 - 19573984
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatc 341  Q
    |||||||  ||||||| |||||||| |||||| | |||||||||||||||||||    
T  19574037 ccgacacgccacctataattacactgaattatgttattttcttaaattattatc 19573984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 4229416 - 4229460
Alignment:
Q  296 acacctatgattacacttaattatatcattttcttaaattattat 340  Q
    |||| |||||||||||| |||||| ||||| ||||||||||||||    
T  4229416 acacatatgattacactgaattatgtcattctcttaaattattat 4229460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 276
Target Start/End: Complemental strand, 19980794 - 19980746
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggaca 276  Q
    ||||||||||  |||||| |||||| ||||||||||||| |||||||||    
T  19980794 ctatgaagcatgaacacttctcggattaggtgtgtctcgatgtcggaca 19980746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 341
Target Start/End: Complemental strand, 31026741 - 31026701
Alignment:
Q  301 tatgattacacttaattatatcattttcttaaattattatc 341  Q
    |||||||||| | |||||| |||||||||||||||||||||    
T  31026741 tatgattacattgaattatgtcattttcttaaattattatc 31026701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 248 - 353
Target Start/End: Complemental strand, 2048 - 1943
Alignment:
Q  248 tcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcattttcttaaattattatccttgtt 347  Q
    ||||| |||||||||   |||||| |||| || || ||||||||||| ||||||||||||||||| || ||| ||||||||  |||||||||||| |||     
T  2048 tcggattaggtgtgtgcaggtgtcagacatgtgtcggtgtccgacacgacacctatgattacactaaaatatgtcattttcacaaattattatccgtgtc 1949  T
Q  348 gacgta 353  Q
    ||||||    
T  1948 gacgta 1943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0598 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 288 - 342
Target Start/End: Original strand, 8053 - 8107
Alignment:
Q  288 ccgacacaacacctatgattacacttaattatatcattttcttaaattattatcc 342  Q
    ||||||| | ||||||| ||||||| |||||| ||||||||| ||||||||||||    
T  8053 ccgacacgatacctatgtttacactgaattatgtcattttctcaaattattatcc 8107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0778 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0778
Description:

Target: scaffold0778; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 341
Target Start/End: Complemental strand, 4453 - 4412
Alignment:
Q  300 ctatgattacacttaattatatcattttcttaaattattatc 341  Q
    ||||||| ||||| ||||||||||| ||||||||||||||||    
T  4453 ctatgatgacactgaattatatcatattcttaaattattatc 4412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 241 - 278
Target Start/End: Original strand, 415 - 452
Alignment:
Q  241 acactcctcggaataggtgtgtctcggtgtcggacacg 278  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  415 acactcctcggattaggtgtgtcccggtgtcggacacg 452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 339
Target Start/End: Complemental strand, 8902 - 8806
Alignment:
Q  243 actcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgaca-caacacctatgattacacttaattatatcattttcttaaattatta 339  Q
    ||||||| || |||| ||||||||||||||||||||| || |||||||||| | |||| | | |||||||| ||| |||| ||||| | |||||||||    
T  8902 actcctcagattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacaccgacacttgtaattacactaaataatatgattttttcaaattatta 8806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 337
Target Start/End: Complemental strand, 56973 - 56932
Alignment:
Q  296 acacctatgattacacttaattatatcattttcttaaattat 337  Q
    |||| |||||||||||| |||||||||||||||| |||||||    
T  56973 acacttatgattacactgaattatatcattttctcaaattat 56932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 339
Target Start/End: Complemental strand, 14646 - 14538
Alignment:
Q  228 ctatgaagcagtaacactcctcggaataggtgtgtctcggtgtcggacacgtatcagtgtccgacacaacacctatgattacacttaattatatcatttt 327  Q
    ||||||||||   ||||||||  || |||| ||||||||||||||||||||| || |||||||||||  ||| | | |||||||| |||||| | |||||    
T  14646 ctatgaagcacgtacactccttcgattaggcgtgtctcggtgtcggacacgtgtc-gtgtccgacac--cacttgtaattacactgaattatgtgatttt 14550  T
Q  328 cttaaattatta 339  Q
     | |||||||||    
T  14549 ttcaaattatta 14538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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