View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16151_high_7 (Length: 495)

Name: NF16151_high_7
Description: NF16151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16151_high_7
NF16151_high_7
[»] chr6 (19 HSPs)
chr6 (22-460)||(27100446-27100884)
chr6 (92-251)||(6699604-6699766)
chr6 (94-222)||(10219536-10219664)
chr6 (92-200)||(27100695-27100803)
chr6 (91-251)||(515942-516102)
chr6 (271-342)||(33187259-33187330)
chr6 (94-228)||(33806649-33806783)
chr6 (151-251)||(8161417-8161517)
chr6 (300-379)||(6699687-6699766)
chr6 (127-178)||(29920451-29920502)
chr6 (213-249)||(21926727-21926763)
chr6 (262-377)||(9307229-9307344)
chr6 (91-170)||(26293365-26293444)
chr6 (163-246)||(33187090-33187173)
chr6 (144-202)||(34937841-34937899)
chr6 (163-220)||(9307298-9307355)
chr6 (152-217)||(9436537-9436602)
chr6 (271-320)||(10349765-10349814)
chr6 (272-320)||(23140465-23140513)
[»] chr3 (17 HSPs)
chr3 (95-251)||(48047788-48047944)
chr3 (94-220)||(30843785-30843911)
chr3 (90-218)||(14984402-14984529)
chr3 (95-141)||(14984714-14984760)
chr3 (93-139)||(30669355-30669401)
chr3 (92-166)||(51889754-51889828)
chr3 (101-178)||(34105284-34105361)
chr3 (90-202)||(621598-621709)
chr3 (91-180)||(46848391-46848480)
chr3 (95-178)||(26483037-26483120)
chr3 (155-218)||(38989874-38989937)
chr3 (300-379)||(46848400-46848479)
chr3 (163-202)||(47944548-47944587)
chr3 (262-320)||(43838815-43838873)
chr3 (98-139)||(12832335-12832376)
chr3 (163-204)||(21433558-21433599)
chr3 (268-317)||(22319063-22319112)
[»] scaffold0086 (1 HSPs)
scaffold0086 (94-220)||(21838-21964)
[»] chr4 (32 HSPs)
chr4 (91-217)||(11840018-11840144)
chr4 (91-228)||(12034378-12034515)
chr4 (98-202)||(17381549-17381653)
chr4 (91-251)||(31903435-31903595)
chr4 (91-221)||(32934120-32934250)
chr4 (195-247)||(20177617-20177669)
chr4 (91-202)||(17381280-17381391)
chr4 (92-170)||(4161619-4161697)
chr4 (97-182)||(12922168-12922253)
chr4 (95-247)||(51226061-51226212)
chr4 (95-250)||(42375184-42375339)
chr4 (92-218)||(1758296-1758422)
chr4 (92-202)||(13834324-13834434)
chr4 (90-200)||(29223110-29223220)
chr4 (93-142)||(26499277-26499326)
chr4 (127-247)||(28286235-28286349)
chr4 (95-220)||(40317745-40317870)
chr4 (95-220)||(40327819-40327944)
chr4 (90-202)||(4215166-4215278)
chr4 (271-342)||(8170732-8170804)
chr4 (153-217)||(35075822-35075886)
chr4 (90-157)||(30316046-30316113)
chr4 (92-139)||(35255525-35255572)
chr4 (91-222)||(31903246-31903378)
chr4 (92-182)||(40407656-40407746)
chr4 (93-202)||(971844-971952)
chr4 (301-374)||(12922168-12922241)
chr4 (92-141)||(35075618-35075667)
chr4 (95-220)||(55132518-55132643)
chr4 (271-379)||(4161619-4161727)
chr4 (163-219)||(5979401-5979457)
chr4 (271-379)||(13834324-13834432)
[»] chr5 (16 HSPs)
chr5 (94-250)||(16127049-16127205)
chr5 (193-246)||(14121990-14122043)
chr5 (90-202)||(14461771-14461883)
chr5 (95-229)||(29686426-29686560)
chr5 (90-202)||(6217642-6217754)
chr5 (91-202)||(23159025-23159136)
chr5 (90-124)||(2707826-2707860)
chr5 (163-221)||(8206095-8206153)
chr5 (271-329)||(14468816-14468874)
chr5 (101-247)||(17676748-17676894)
chr5 (92-229)||(26675241-26675378)
chr5 (92-229)||(26946849-26946986)
chr5 (271-320)||(35293811-35293860)
chr5 (94-202)||(917157-917265)
chr5 (95-123)||(17675410-17675438)
chr5 (210-250)||(35079025-35079065)
[»] chr1 (24 HSPs)
chr1 (91-247)||(6727950-6728106)
chr1 (91-217)||(31134708-31134834)
chr1 (93-218)||(27463890-27464015)
chr1 (167-260)||(35607217-35607310)
chr1 (102-200)||(12436944-12437042)
chr1 (94-182)||(8791906-8791994)
chr1 (271-375)||(30050595-30050699)
chr1 (91-147)||(34177539-34177595)
chr1 (90-170)||(44391527-44391607)
chr1 (103-202)||(33747277-33747376)
chr1 (93-200)||(38901478-38901585)
chr1 (92-182)||(16192263-16192353)
chr1 (95-217)||(27900887-27901009)
chr1 (93-139)||(32669783-32669829)
chr1 (99-197)||(38445173-38445271)
chr1 (95-140)||(8234050-8234095)
chr1 (129-202)||(8778986-8779059)
chr1 (105-202)||(19464225-19464322)
chr1 (95-200)||(36144785-36144889)
chr1 (94-179)||(39162405-39162490)
chr1 (105-182)||(45679514-45679591)
chr1 (332-377)||(49880047-49880092)
chr1 (163-251)||(8987233-8987321)
chr1 (95-147)||(32670034-32670086)
[»] chr7 (15 HSPs)
chr7 (136-250)||(23474548-23474662)
chr7 (92-251)||(46719967-46720126)
chr7 (99-247)||(14669237-14669385)
chr7 (90-251)||(32996452-32996613)
chr7 (94-202)||(34703628-34703735)
chr7 (265-338)||(23457810-23457883)
chr7 (91-139)||(18942733-18942781)
chr7 (163-203)||(23441521-23441561)
chr7 (90-202)||(24127149-24127261)
chr7 (163-250)||(23457766-23457853)
chr7 (328-379)||(30601295-30601346)
chr7 (93-154)||(21401749-21401810)
chr7 (265-338)||(23441491-23441564)
chr7 (268-316)||(19228803-19228851)
chr7 (163-203)||(23532913-23532953)
[»] chr8 (10 HSPs)
chr8 (91-251)||(21601904-21602063)
chr8 (143-220)||(4493193-4493270)
chr8 (97-251)||(14523893-14524047)
chr8 (96-260)||(18080183-18080346)
chr8 (114-217)||(6915499-6915601)
chr8 (95-200)||(8340307-8340411)
chr8 (92-181)||(17488213-17488302)
chr8 (271-384)||(21600639-21600751)
chr8 (93-182)||(21600657-21600745)
chr8 (95-124)||(32169925-32169954)
[»] chr2 (5 HSPs)
chr2 (93-228)||(6788459-6788594)
chr2 (103-182)||(11281359-11281438)
chr2 (92-215)||(40124261-40124384)
chr2 (93-139)||(20167654-20167700)
chr2 (118-199)||(18903171-18903252)
[»] scaffold0114 (1 HSPs)
scaffold0114 (332-378)||(34907-34953)
[»] scaffold0050 (1 HSPs)
scaffold0050 (92-202)||(81292-81402)


Alignment Details
Target: chr6 (Bit Score: 371; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 22 - 460
Target Start/End: Original strand, 27100446 - 27100884
Alignment:
Q  22 gtgttagttaatgtctcacacatcttgaatctctttctttaaaatgttttctcttatataaatatatctggggtaatagtcattttggtccctaaatgtg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||    
T  27100446 gtgttagttaatgtctcacacatcttgaatctctttctttaaaatgttttctcttatataaatatatctggggtaatagtcattttattccctaaatgtg 27100545  T
Q  122 taagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataatt 221  Q
    |||||||| ||||||||||| ||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27100546 taagcagtggtcacaataattcttcattgtatcaaatctccaaaatagttcttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataatt 27100645  T
Q  222 cttcaatgttgatattaactcttttcatatgacgattgaagtcaaaaattattttgattaacaaaatgcataataaatgactattttgaaatttcgatat 321  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  27100646 cttcaatgttgacattaactcttttcatatgacgattgaagtcaaaaattattttgattaacaaaatgcataataaaggactattttgaaattttgatat 27100745  T
Q  322 actgatgaactattatgactattaattataaatttagggaccaaaataactattacccaaaaatatttagaaagaatgtgtttgaaagcctacaaaagtt 421  Q
    ||||||||||||||||||||| | |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27100746 actgatgaactattatgactactgattacaaatttagggaccaaaatgactattacccaaaaatatttagaaagaatgtgtttaaaagcctacaaaagtt 27100845  T
Q  422 agttttacaaaacacagttcaaagtatttctttcatatg 460  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  27100846 agttttacaaaacactgttcaaaatatttctttcatatg 27100884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 251
Target Start/End: Complemental strand, 6699766 - 6699604
Alignment:
Q  92 gggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctc---ttcg 188  Q
    ||||||||||||||||||||||||||||| |||  ||||| || |||| ||| ||| |||||||||||| |||||||||  |||| | ||| |   || |    
T  6699766 gggtaatagtcattttggtccctaaatgtataacaagtaggcataatagtccctcaatatatcaaattttcaaaatagtccttgaatatgcactcatttg 6699667  T
Q  189 ttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcatat 251  Q
    ||| ||||||||||   ||||||||||||| | | ||||| || | |||||||||| ||||||    
T  6699666 ttagtcaaaatagtcattgacgttaaaatagtccatcaatattaacattaactcttctcatat 6699604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 94 - 222
Target Start/End: Original strand, 10219536 - 10219664
Alignment:
Q  94 gtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaat 193  Q
    ||||||||||||||||||||| |||||||||  ||||| ||||||| ||| | | | | || || || ||||||||||  ||||||||| ||| |||| |    
T  10219536 gtaatagtcattttggtccctgaatgtgtaacgagtagccacaatagtcccttaatgtgtcgaaatttcaaaatagttcctgattgtgcactttgttagt 10219635  T
Q  194 caaaatagttcatgacgttaaaataattc 222  Q
    |||||||||   |||||||||||||||||    
T  10219636 caaaatagtctctgacgttaaaataattc 10219664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 92 - 200
Target Start/End: Complemental strand, 27100803 - 27100695
Alignment:
Q  92 gggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgtta 191  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| |||| | | ||| ||||||||| || |||||||||  || ||| |||  || ||||    
T  27100803 gggtaatagtcattttggtccctaaatttgtaatcagtagtcataatagttcatcagtatatcaaaatttcaaaatagtcctttattatgcattttgtta 27100704  T
Q  192 atcaaaata 200  Q
    |||||||||    
T  27100703 atcaaaata 27100695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 91 - 251
Target Start/End: Complemental strand, 516102 - 515942
Alignment:
Q  91 ggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataat-ccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgt 189  Q
    |||||||||||||||||||||||| |||||||||  ||||||||||| | |  ||| | | |||| || ||||||||||||   ||||||||| ||||||    
T  516102 ggggtaatagtcattttggtccctgaatgtgtaacgagtagtcacaacagtaacttga-tgtatcgaaattccaaaatagtcaatgattgtgcacttcgt 516004  T
Q  190 taatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcatat 251  Q
    || ||||||||||   ||| ||||| ||  | | ||||| |||| |||||||||||||||||    
T  516003 tagtcaaaatagtctctgatgttaagatggtccctcaatattgacattaactcttttcatat 515942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 342
Target Start/End: Original strand, 33187259 - 33187330
Alignment:
Q  271 tattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatgaactattatgacta 342  Q
    ||||||||||||| |||| |||||| |  ||||||||||||||||||||| | | |||||||||||||||||    
T  33187259 tattttgattaacgaaattcataatcagagactattttgaaatttcgatacatttatgaactattatgacta 33187330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 94 - 228
Target Start/End: Original strand, 33806649 - 33806783
Alignment:
Q  94 gtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaat 193  Q
    |||||||| ||||| |||| | |||||||||| ||||||||||||||||||| | | |||| || ||| ||||||||  |||||| ||  ||| |||| |    
T  33806649 gtaatagttattttagtccatgaatgtgtaaggagtagtcacaataatcctttaatgtatcgaaattctaaaatagtcattgattatgtactttgttagt 33806748  T
Q  194 caaaatagttcatgacgttaaaataattcttcaat 228  Q
    |||||||||   | ||||||||||| | |||||||    
T  33806749 caaaatagtctctaacgttaaaatattccttcaat 33806783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 251
Target Start/End: Complemental strand, 8161517 - 8161417
Alignment:
Q  151 tatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcata 250  Q
    ||||||| ||| |||||| ||||| |||||    || |||| |||||||||||  ||||||||||||| || |||  |||||||||||||||||||||||    
T  8161517 tatcaaaattcaaaaatatttttttattgtatattttgttagtcaaaatagtttttgacgttaaaatagtttttcgttgttgatattaactcttttcata 8161418  T
Q  251 t 251  Q
    |    
T  8161417 t 8161417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 379
Target Start/End: Original strand, 6699687 - 6699766
Alignment:
Q  300 gactattttgaaatttcgatatactgatgaactattatgactattaattataaatttagggaccaaaataactattaccc 379  Q
    ||||||||||||| || |||||| ||| | ||||||||| ||| |  ||||| |||||||||||||||| ||||||||||    
T  6699687 gactattttgaaaatttgatatattgagggactattatgcctacttgttatacatttagggaccaaaatgactattaccc 6699766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 178
Target Start/End: Original strand, 29920451 - 29920502
Alignment:
Q  127 agtagtcacaataatccttcattatatcaaatttccaaaatagtttttgatt 178  Q
    ||||||||||||||||||||| | ||||||| || |||||||||||||||||    
T  29920451 agtagtcacaataatccttcaatgtatcaaaatttcaaaatagtttttgatt 29920502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 21926763 - 21926727
Alignment:
Q  213 aaaataattcttcaatgttgatattaactcttttcat 249  Q
    ||||||||||||||||||||| |||||||||||||||    
T  21926763 aaaataattcttcaatgttgacattaactcttttcat 21926727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 377
Target Start/End: Complemental strand, 9307344 - 9307229
Alignment:
Q  262 gtcaaaaattattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatgaactattatgactattaattataaatttaggga 361  Q
    ||||| |||||||||||||||| || |||||||||||  |||||||| |||||| |||| | | |   |||||||| |||||| |||| | ||| || ||    
T  9307344 gtcaagaattattttgattaacgaagtgcataataaaaaactattttaaaattttgatacatttagagactattatcactatttattacacattcagaga 9307245  T
Q  362 ccaaaataactattac 377  Q
     ||||||||| |||||    
T  9307244 tcaaaataaccattac 9307229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 26293365 - 26293444
Alignment:
Q  91 ggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagt 170  Q
    |||||| |||| ||||||||||||||||||||||  ||||  |||||||||| || | ||||| ||| ||| ||||||||    
T  26293365 ggggtagtagttattttggtccctaaatgtgtaacaagtaaccacaataatcttttaatatattaaaattctaaaatagt 26293444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 33187090 - 33187173
Alignment:
Q  163 aaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactctttt 246  Q
    |||||||||||||  |||||  |||| || ||||||||||   ||||||||||||| |||||||||||||| | ||||| ||||    
T  33187090 aaaatagtttttggatgtgcagttcgatagtcaaaatagtcattgacgttaaaatagttcttcaatgttgacaataactttttt 33187173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 34937841 - 34937899
Alignment:
Q  144 ttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagt 202  Q
    |||||| ||||||| || ||||||| ||||||||||||  ||| |||||||||||||||    
T  34937841 ttcattgtatcaaaatttcaaaataatttttgattgtgtactttgttaatcaaaatagt 34937899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Original strand, 9307298 - 9307355
Alignment:
Q  163 aaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataat 220  Q
    |||||||||||| ||| ||| ||||||||||||||||| ||| |||||  ||||||||    
T  9307298 aaaatagttttttattatgcacttcgttaatcaaaataattcttgacgcaaaaataat 9307355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 9436537 - 9436602
Alignment:
Q  152 atcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaat 217  Q
    |||||| || |||||||||| || ||||||| |||||||| ||||||| |||  ||||||||||||    
T  9436537 atcaaaattacaaaatagttcttaattgtgcacttcgttagtcaaaattgtttctgacgttaaaat 9436602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 320
Target Start/End: Complemental strand, 10349814 - 10349765
Alignment:
Q  271 tattttgattaacaaaatgcataataaatgactattttgaaatttcgata 320  Q
    ||||||||||||| || |||| ||| || |||||||||||||||||||||    
T  10349814 tattttgattaacgaagtgcacaatgaaggactattttgaaatttcgata 10349765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 23140513 - 23140465
Alignment:
Q  272 attttgattaacaaaatgcataataaatgactattttgaaatttcgata 320  Q
    ||||||| |||||||||||| ||| |  |||||||||||||||||||||    
T  23140513 attttgactaacaaaatgcaaaattagagactattttgaaatttcgata 23140465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 95 - 251
Target Start/End: Original strand, 48047788 - 48047944
Alignment:
Q  95 taatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatc 194  Q
    ||||||||||||| |||||  |||||||||  ||| | ||||||  ||||||| | || |||| |||||||||| | | ||||| ||| |||| ||||||    
T  48047788 taatagtcattttagtccccgaatgtgtaaagagtggccacaattgtccttcaatgtaacaaacttccaaaataatatctgattatgcgcttcattaatc 48047887  T
Q  195 aaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcatat 251  Q
    |||||||| ||||||||||||||| | | |||||||||| | |||||||||||||||    
T  48047888 aaaatagtccatgacgttaaaatagtccctcaatgttgacaataactcttttcatat 48047944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 94 - 220
Target Start/End: Complemental strand, 30843911 - 30843785
Alignment:
Q  94 gtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaat 193  Q
    |||||||||| |||||| ||| |||||||||  ||||||||||||| ||  | | | ||||||| |||||||||||| | ||||||||| ||| ||||||    
T  30843911 gtaatagtcactttggttcctgaatgtgtaatgagtagtcacaatagtctcttaatgtatcaaaattccaaaatagtctctgattgtgcactttgttaat 30843812  T
Q  194 caaaatagttcatgacgttaaaataat 220  Q
    ||||||||| | ||||| |||||||||    
T  30843811 caaaatagtccctgacgctaaaataat 30843785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 90 - 218
Target Start/End: Original strand, 14984402 - 14984529
Alignment:
Q  90 tggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgt 189  Q
    |||| |||||||||||||||||| | |||||||||  ||||||||||||| ||| ||| |||||| || || ||||||| |   ||||||||| ||||||    
T  14984402 tgggataatagtcattttggtcc-tgaatgtgtaacgagtagtcacaatagtccctcaatatatcgaaatttcaaaatactccctgattgtgcacttcgt 14984500  T
Q  190 taatcaaaatagttcatgacgttaaaata 218  Q
    || |||||||||||| |||| ||||||||    
T  14984501 tagtcaaaatagttcctgacattaaaata 14984529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 95 - 141
Target Start/End: Complemental strand, 14984760 - 14984714
Alignment:
Q  95 taatagtcattttggtccctaaatgtgtaagcagtagtcacaataat 141  Q
    |||||||||||||||||||| |||||||||| |||||||||||||||    
T  14984760 taatagtcattttggtccctgaatgtgtaagaagtagtcacaataat 14984714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 30669355 - 30669401
Alignment:
Q  93 ggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaata 139  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||    
T  30669355 ggtaatagtcattttgatccctaaatgtgtaaggagtagtcacaata 30669401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 166
Target Start/End: Original strand, 51889754 - 51889828
Alignment:
Q  92 gggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaa 166  Q
    ||||||||||||||||| || || |||||||||| ||||||||||||| || |||| | ||||||| ||||||||    
T  51889754 gggtaatagtcattttgatctctgaatgtgtaaggagtagtcacaatagtctttcaatgtatcaaaattccaaaa 51889828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 178
Target Start/End: Original strand, 34105284 - 34105361
Alignment:
Q  101 tcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgatt 178  Q
    ||||||| ||| |||||| |||||| |||||||| ||||||| |||| | ||||||| || |||||||||||||||||    
T  34105284 tcattttagtctctaaatatgtaagaagtagtcataataatcgttcagtgtatcaaaatttcaaaatagtttttgatt 34105361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 621598 - 621709
Alignment:
Q  90 tggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgt 189  Q
    |||||||| || |||||||||| |||||| |||||  ||||||||||||| |||||   |  |||||| || |||||||| |  ||||||||| ||||||    
T  621598 tggggtaacaggcattttggtctctaaatttgtaatgagtagtcacaatagtcctttgatgaatcaaaatttcaaaatag-tcgtgattgtgcacttcgt 621696  T
Q  190 taatcaaaatagt 202  Q
    |||||||||||||    
T  621697 taatcaaaatagt 621709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 46848480 - 46848391
Alignment:
Q  91 ggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgt 180  Q
    ||||||||||||| |||||||||| |||||||||  |||||||| |||| | | ||| | ||||||| || |||||||||  ||||||||    
T  46848480 ggggtaatagtcactttggtccctgaatgtgtaatgagtagtcaaaatagttcctcaatgtatcaaaatttcaaaatagtccttgattgt 46848391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 178
Target Start/End: Original strand, 26483037 - 26483120
Alignment:
Q  95 taatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgatt 178  Q
    |||||||||||||||||| || |||| |||  ||||| ||||||| || || | | ||||||| ||| ||||||||||||||||    
T  26483037 taatagtcattttggtccttagatgtataacgagtagacacaatagtcatttaatgtatcaaaattctaaaatagtttttgatt 26483120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 155 - 218
Target Start/End: Complemental strand, 38989937 - 38989874
Alignment:
Q  155 aaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaata 218  Q
    |||||| ||||||| ||||||||||||| |||||||  ||||||||||   |||||||||||||    
T  38989937 aaattttcaaaatattttttgattgtgcacttcgttggtcaaaatagtctctgacgttaaaata 38989874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 300 - 379
Target Start/End: Original strand, 46848400 - 46848479
Alignment:
Q  300 gactattttgaaatttcgatatactgatgaactattatgactattaattataaatttagggaccaaaataactattaccc 379  Q
    |||||||||||||||| |||| | ||| |||||||| |||||| | |||| | ||| |||||||||| | ||||||||||    
T  46848400 gactattttgaaattttgatacattgaggaactattttgactactcattacacattcagggaccaaagtgactattaccc 46848479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 47944587 - 47944548
Alignment:
Q  163 aaaatagtttttgattgtgctcttcgttaatcaaaatagt 202  Q
    |||||||| ||||||||||| |||||||||||||||||||    
T  47944587 aaaatagtctttgattgtgcacttcgttaatcaaaatagt 47944548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 320
Target Start/End: Original strand, 43838815 - 43838873
Alignment:
Q  262 gtcaaaaattattttgattaacaaaatgcataataaatgactattttgaaatttcgata 320  Q
    |||||| | |||||||| |||||||||||| ||| |||||||||||| |||||| ||||    
T  43838815 gtcaaagactattttgactaacaaaatgcacaatcaatgactattttaaaattttgata 43838873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 12832376 - 12832335
Alignment:
Q  98 tagtcattttggtccctaaatgtgtaagcagtagtcacaata 139  Q
    |||||||||||||||||||||||||||  ||||| |||||||    
T  12832376 tagtcattttggtccctaaatgtgtaataagtagacacaata 12832335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 21433558 - 21433599
Alignment:
Q  163 aaaatagtttttgattgtgctcttcgttaatcaaaatagttc 204  Q
    ||||||||| |||||||||| ||| |||||||||||||||||    
T  21433558 aaaatagttattgattgtgcactttgttaatcaaaatagttc 21433599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 317
Target Start/End: Complemental strand, 22319112 - 22319063
Alignment:
Q  268 aattattttgattaacaaaatgcataataaatgactattttgaaatttcg 317  Q
    ||||||||| | ||||||| |||||||| ||||||||||||| |||||||    
T  22319112 aattatttttactaacaaagtgcataatcaatgactattttgtaatttcg 22319063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 94 - 220
Target Start/End: Complemental strand, 21964 - 21838
Alignment:
Q  94 gtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaat 193  Q
    |||| ||||||||||||| || ||||| |||| ||||||||||||| || |||| ||||||||| ||| |||||| ||| ||||||||| ||| |||| |    
T  21964 gtaaaagtcattttggtctctgaatgtttaagaagtagtcacaatagtctttcaatatatcaaaattcaaaaatattttctgattgtgcactttgttagt 21865  T
Q  194 caaaatagttcatgacgttaaaataat 220  Q
     |||||||||||||||  |||||||||    
T  21864 aaaaatagttcatgacactaaaataat 21838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 11840144 - 11840018
Alignment:
Q  91 ggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgtt 190  Q
    |||||||||||||||||||||||| |||| ||||| ||||||| |||||  || ||| | ||||||| || |||||||||   ||||||||| ||| |||    
T  11840144 ggggtaatagtcattttggtccctgaatgcgtaaggagtagtcgcaataggccctcaatgtatcaaaatttcaaaatagtccctgattgtgcactttgtt 11840045  T
Q  191 aatcaaaatagttcatgacgttaaaat 217  Q
    |||||||||||| | ||||||||||||    
T  11840044 aatcaaaatagtccctgacgttaaaat 11840018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 91 - 228
Target Start/End: Original strand, 12034378 - 12034515
Alignment:
Q  91 ggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgtt 190  Q
    |||||||||||||||||||||||| ||||| |||  ||||||||||||| ||| ||| | ||||||| || ||||||||| | |||||||   ||| |||    
T  12034378 ggggtaatagtcattttggtccctgaatgtataacgagtagtcacaatagtccctcaatgtatcaaaattgcaaaatagtctctgattgtatactttgtt 12034477  T
Q  191 aatcaaaatagttcatgacgttaaaataattcttcaat 228  Q
    | ||||||||||   ||||  ||||||||| |||||||    
T  12034478 agtcaaaatagtctctgacactaaaataatccttcaat 12034515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 17381653 - 17381549
Alignment:
Q  98 tagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaa 197  Q
    |||||| |||||||||| |||| ||||  ||||||||||||| ||| ||| | ||||||| ||||||||||||   ||||||||| ||| ||||||||||    
T  17381653 tagtcactttggtccctgaatgagtaacaagtagtcacaatagtccctcaatgtatcaaaattccaaaatagtccctgattgtgcactttgttaatcaaa 17381554  T
Q  198 atagt 202  Q
    |||||    
T  17381553 atagt 17381549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 251
Target Start/End: Complemental strand, 31903595 - 31903435
Alignment:
Q  91 ggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgtt 190  Q
    |||||||| |||||||||||| || |||||||||  | |||| |||||| ||| |||   ||||||| |||||||||||| | |||| |||| ||| |||    
T  31903595 ggggtaatggtcattttggtctctgaatgtgtaacgaatagttacaatagtccctcaacgtatcaaaattccaaaatagtctctgatcgtgcactttgtt 31903496  T
Q  191 aatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcatat 251  Q
    |||||||||||| |||||||   ||||||| | |||||  | | | |||||||||||||||    
T  31903495 aatcaaaatagtccatgacgcataaataatccctcaatactcacaataactcttttcatat 31903435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 91 - 221
Target Start/End: Complemental strand, 32934250 - 32934120
Alignment:
Q  91 ggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgtt 190  Q
    ||||||||| |||||||||||||| |||||||||| |||   || |||| ||| ||| | ||||||| ||  |||||||||||||||||||| ||| | |    
T  32934250 ggggtaataatcattttggtccctgaatgtgtaaggagtgaccataatagtccctcaatgtatcaaaattttaaaatagtttttgattgtgcactttgct 32934151  T
Q  191 aatcaaaatagttcatgacgttaaaataatt 221  Q
    | |||||||||||  | || |||||||||||    
T  32934150 agtcaaaatagtttctaacattaaaataatt 32934120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 20177669 - 20177617
Alignment:
Q  195 aaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttc 247  Q
    ||||||| | ||||||||||||||||||||||| |||||||||||||||||||    
T  20177669 aaaatagattatgacgttaaaataattcttcaaagttgatattaactcttttc 20177617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 17381280 - 17381391
Alignment:
Q  91 ggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgtt 190  Q
    |||||||||||||||||||| ||| ||||||||   ||||||||||||| ||||||| | ||||||| || ||||| ||| | |||| || | ||| |||    
T  17381280 ggggtaatagtcattttggttcctgaatgtgtagcaagtagtcacaatagtccttcaatgtatcaaaatttcaaaaaagtctctgatagtccactttgtt 17381379  T
Q  191 aatcaaaatagt 202  Q
    | ||||||||||    
T  17381380 agtcaaaatagt 17381391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 92 - 170
Target Start/End: Original strand, 4161619 - 4161697
Alignment:
Q  92 gggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagt 170  Q
    |||||||||||| ||| ||||| ||||||||||  ||||||||||||| ||||||| | ||||||| || |||||||||    
T  4161619 gggtaatagtcactttcgtccccaaatgtgtaatgagtagtcacaatagtccttcaatgtatcaaaatttcaaaatagt 4161697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 12922168 - 12922253
Alignment:
Q  97 atagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgc 182  Q
    ||||| |||||||||||| |||||||||  ||||||||||||| |  |||| | |||| || || |||||||||||||||||||||    
T  12922168 atagttattttggtccctgaatgtgtaataagtagtcacaatagtatttcaatgtatcgaaatttcaaaatagtttttgattgtgc 12922253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 95 - 247
Target Start/End: Complemental strand, 51226212 - 51226061
Alignment:
Q  95 taatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatc 194  Q
    |||||||||||| |||| || ||| |||||  ||| ||||||||| || |||| | |||| || ||| ||||| ||| |||||||||| ||  |||| ||    
T  51226212 taatagtcattt-ggtctctcaatatgtaacaagttgtcacaatagtctttcaatgtatcgaaattctaaaattgttcttgattgtgcactctgttagtc 51226114  T
Q  195 aaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttc 247  Q
    |||||||||  ||| ||||||||| ||| |||||||| | | |||||||||||    
T  51226113 aaaatagttattgaagttaaaatagttcctcaatgtttacaataactcttttc 51226061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 250
Target Start/End: Complemental strand, 42375339 - 42375184
Alignment:
Q  95 taatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatc 194  Q
    |||||||||||||| |   | |||||||||  ||||| ||||||||| ||| | | |||| || || |||| |||||||||||| ||| |||||||| |     
T  42375339 taatagtcattttgattattgaatgtgtaatgagtagccacaataattctttaatgtatcgaaatttcaaagtagtttttgattctgcacttcgttagtt 42375240  T
Q  195 aaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcata 250  Q
    ||||||||   |||| |||||||| |   |||||| |||||||||||| |||||||    
T  42375239 aaaatagtctctgacattaaaatagtctctcaatgctgatattaactcatttcata 42375184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 218
Target Start/End: Original strand, 1758296 - 1758422
Alignment:
Q  92 gggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgtta 191  Q
    ||||||| |||||||||| || | |||||||||| ||||| || ||||  |  ||| | ||||||| || ||||||||||| | ||||||  ||||||||    
T  1758296 gggtaatggtcattttggcccttgaatgtgtaaggagtagccataatagacactcaatgtatcaaaatttcaaaatagtttcttattgtgtacttcgtta 1758395  T
Q  192 atcaaaatagttcatgacgttaaaata 218  Q
     |||||||||| | |||| ||||||||    
T  1758396 gtcaaaatagtccttgacattaaaata 1758422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 92 - 202
Target Start/End: Original strand, 13834324 - 13834434
Alignment:
Q  92 gggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgtta 191  Q
    |||||||| | |||||||||||| |||||||||| ||||  || |||| ||| ||| | ||||||| ||  ||||||||  |||||||||| ||| ||||    
T  13834324 gggtaataattattttggtccctgaatgtgtaaggagtaaccataatagtccctcaatttatcaaaattttaaaatagtccttgattgtgcactttgtta 13834423  T
Q  192 atcaaaatagt 202  Q
     ||||||||||    
T  13834424 gtcaaaatagt 13834434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 29223110 - 29223220
Alignment:
Q  90 tggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgt 189  Q
    |||| ||||||||| |||||| | |||| ||||||  ||||||||||||||| ||||| | ||| ||| || |||||| |||  |||||||||  |||||    
T  29223110 tgggataatagtcactttggtgcttaaacgtgtaatgagtagtcacaataattcttcaatgtataaaaatttcaaaatcgttaatgattgtgcaattcgt 29223209  T
Q  190 taatcaaaata 200  Q
    || ||||||||    
T  29223210 tagtcaaaata 29223220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 26499277 - 26499326
Alignment:
Q  93 ggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatc 142  Q
    |||||||||||||||||| ||| |||||||||  ||||||||||||||||    
T  26499277 ggtaatagtcattttggttcctgaatgtgtaaaaagtagtcacaataatc 26499326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 247
Target Start/End: Original strand, 28286235 - 28286349
Alignment:
Q  127 agtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttca 226  Q
    ||||||||||||| | ||||| |  | |||| |||||||||||| | ||||| ||| |||| ||| ||||| ||||      ||||||||||||||||||    
T  28286235 agtagtcacaatagttcttcagtgaaacaaaattccaaaatagtctctgattatgcacttcattagtcaaagtagt------cgttaaaataattcttca 28286328  T
Q  227 atgttgatattaactcttttc 247  Q
    ||||||| | |||||||||||    
T  28286329 atgttgacaataactcttttc 28286349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 40317870 - 40317745
Alignment:
Q  95 taatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatc 194  Q
    |||||||||||||| ||| | |||||||||  | | ||||||||| | | ||| | ||| ||||||  ||||||||  |||||||| | ||| |||||||    
T  40317870 taatagtcattttgatccatgaatgtgtaatgaattgtcacaatagttcatcaatgtataaaatttttaaaatagtccttgattgtacactttgttaatc 40317771  T
Q  195 aaaatagttcatgacgttaaaataat 220  Q
    ||||||||   |||||||||||||||    
T  40317770 aaaatagtctctgacgttaaaataat 40317745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 40327944 - 40327819
Alignment:
Q  95 taatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatc 194  Q
    |||||||||||||| ||| | |||||||||  | | ||||||||| | | ||| | ||| ||||||  ||||||||  |||||||| | ||| |||||||    
T  40327944 taatagtcattttgatccatgaatgtgtaatgaattgtcacaatagttcatcaatgtataaaatttttaaaatagtccttgattgtacactttgttaatc 40327845  T
Q  195 aaaatagttcatgacgttaaaataat 220  Q
    ||||||||   |||||||||||||||    
T  40327844 aaaatagtctctgacgttaaaataat 40327819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 4215278 - 4215166
Alignment:
Q  90 tggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgt 189  Q
    ||||||||||||||||| | | ||  |||||||||  ||||||| ||||| ||| ||| |  |||||| ||  |||||||| |  |||||||| ||||||    
T  4215278 tggggtaatagtcatttcgatacccgaatgtgtaacgagtagtcgcaatagtccctcaatgaatcaaaattttaaaatagtctcggattgtgcacttcgt 4215179  T
Q  190 taatcaaaatagt 202  Q
    |||||||||||||    
T  4215178 taatcaaaatagt 4215166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 8170804 - 8170732
Alignment:
Q  271 tattttgattaacaaaatgcataataaatgactattttgaaa-tttcgatatactgatgaactattatgacta 342  Q
    |||||||| ||||||| |||| ||| || ||||||||||||| ||| |||||| ||||| |||||||||||||    
T  8170804 tattttgactaacaaagtgcacaatcaaagactattttgaaatttttgatatattgatggactattatgacta 8170732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 35075886 - 35075822
Alignment:
Q  153 tcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaat 217  Q
    ||||| || ||||||| || |||||||||| |||||||| ||||| ||||||||||| |||||||    
T  35075886 tcaaaattacaaaataattcttgattgtgcacttcgttagtcaaactagttcatgacattaaaat 35075822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 157
Target Start/End: Complemental strand, 30316113 - 30316046
Alignment:
Q  90 tggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaa 157  Q
    ||||||||||||||| ||||||||| ||||| |||  ||||||||||| | ||||||| | |||||||    
T  30316113 tggggtaatagtcatattggtccctgaatgtataataagtagtcacaaaagtccttcaatgtatcaaa 30316046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 139
Target Start/End: Complemental strand, 35255572 - 35255525
Alignment:
Q  92 gggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaata 139  Q
    |||||||||| |||||||||||||||| |||||  |||||||||||||    
T  35255572 gggtaatagttattttggtccctaaatatgtaacgagtagtcacaata 35255525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 31903246 - 31903378
Alignment:
Q  91 ggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttca--ttatatcaaatttccaaaatagtttttgattgtgctcttcg 188  Q
    ||||||||||||||||| | |||| |||||||||  |||||| | |||| |||  ||   ||||||||| || |||||||||   |||||||||| |||     
T  31903246 ggggtaatagtcatttt-gaccctgaatgtgtaacaagtagttataatagtcccacaatatatatcaaaatttcaaaatagtccctgattgtgcttttca 31903344  T
Q  189 ttaatcaaaatagttcatgacgttaaaataattc 222  Q
     || ||||||| || |||||||||||||||||||    
T  31903345 gtagtcaaaattgtccatgacgttaaaataattc 31903378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 40407746 - 40407656
Alignment:
Q  92 gggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgc 182  Q
    |||||||| | |||||||||||| |||||||||| ||||  || |||| ||||||| | ||||||| ||  ||||||||  ||||||||||    
T  40407746 gggtaataattattttggtccctgaatgtgtaaggagtaaccataatagtccttcaatgtatcaaaattttaaaatagtcattgattgtgc 40407656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 202
Target Start/End: Original strand, 971844 - 971952
Alignment:
Q  93 ggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaa 192  Q
    ||||||||||| || |||| || ||| |||||  ||| ||||||||| || |||| | ||||||| || ||||||||| ||||||||||| ||| ||||     
T  971844 ggtaatagtcactt-ggtcactgaatttgtaacgagttgtcacaatagtcattcaatgtatcaaaatttcaaaatagtctttgattgtgcactttgttag 971942  T
Q  193 tcaaaatagt 202  Q
    ||||| ||||    
T  971943 tcaaagtagt 971952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 301 - 374
Target Start/End: Complemental strand, 12922241 - 12922168
Alignment:
Q  301 actattttgaaatttcgatatactgatgaactattatgactattaattataaatttagggaccaaaataactat 374  Q
    |||||||||||||||||||| | |||   |||||| |||||| | |||| | ||| ||||||||||||||||||    
T  12922241 actattttgaaatttcgatacattgaaatactattgtgactacttattacacattcagggaccaaaataactat 12922168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 35075618 - 35075667
Alignment:
Q  92 gggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataat 141  Q
    |||||||||| ||||||||| |||||| |||||  |||||||||||||||    
T  35075618 gggtaatagttattttggtcgctaaatatgtaatgagtagtcacaataat 35075667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 220
Target Start/End: Complemental strand, 55132643 - 55132518
Alignment:
Q  95 taatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatc 194  Q
    |||||||||||||| || || |||||||||| || ||||| |||| |  |||| | ||||||| ||  ||||| ||||||||||  || ||| |||||||    
T  55132643 taatagtcattttgatctctgaatgtgtaaggagcagtcaaaatagtttttcaatgtatcaaaattttaaaattgtttttgattcggcactttgttaatc 55132544  T
Q  195 aaaatagttcatgacgttaaaataat 220  Q
    |||| | |   |||||||||||||||    
T  55132543 aaaacaatctctgacgttaaaataat 55132518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 379
Target Start/End: Complemental strand, 4161727 - 4161619
Alignment:
Q  271 tattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatgaactattatgactattaattataaatttagggaccaaaataa 370  Q
    ||||||||  |||| |||| ||||| || |||||||||||||||| |||| | ||| | |||||| |||||| | |||| | |||| ||||| ||| | |    
T  4161727 tattttgaccaacagaatgtataatcaaggactattttgaaattttgatacattgaaggactattgtgactactcattacacatttggggacgaaagtga 4161628  T
Q  371 ctattaccc 379  Q
    |||||||||    
T  4161627 ctattaccc 4161619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 219
Target Start/End: Original strand, 5979401 - 5979457
Alignment:
Q  163 aaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataa 219  Q
    |||||||| | ||||||||| |||||||| ||||||||||   ||||||||||||||    
T  5979401 aaaatagtatatgattgtgcacttcgttagtcaaaatagtctctgacgttaaaataa 5979457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 379
Target Start/End: Complemental strand, 13834432 - 13834324
Alignment:
Q  271 tattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatgaactattatgactattaattataaatttagggaccaaaataa 370  Q
    |||||||| ||||||| |||| ||| || ||||||||| |||||| |||| | ||| | |||||||||  || |  ||| | ||| ||||||||||||||    
T  13834432 tattttgactaacaaagtgcacaatcaaggactattttaaaattttgataaattgagggactattatggttactccttacacattcagggaccaaaataa 13834333  T
Q  371 ctattaccc 379  Q
     ||||||||    
T  13834332 ttattaccc 13834324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 94 - 250
Target Start/End: Original strand, 16127049 - 16127205
Alignment:
Q  94 gtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaat 193  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| ||  |||   ||||||| || |||||||||  |||||||||   || |||| |    
T  16127049 gtaatagtcattttggtccctaaatgtgtaaggagtagtcacaatagtctctcaaagtatcaaaatttcaaaatagtccttgattgtgtagtttgttagt 16127148  T
Q  194 caaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcata 250  Q
    ||||||| |   |||||||||||||||| ||||||    ||| ||||||||||||||    
T  16127149 caaaataatatttgacgttaaaataatttttcaatacccataataactcttttcata 16127205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 14122043 - 14121990
Alignment:
Q  193 tcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactctttt 246  Q
    |||||||| |||| |||||||||||| |||||||||||||||| ||||||||||    
T  14122043 tcaaaataattcacgacgttaaaatagttcttcaatgttgataataactctttt 14121990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 14461883 - 14461771
Alignment:
Q  90 tggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattata-tcaaatttccaaaatagtttttgattgtgctcttcg 188  Q
    ||||||||||||||||||| ||||||||| |||||  ||| | |||||||||| |||| | || ||||||||  |||||||| | ||||||| | |||||    
T  14461883 tggggtaatagtcattttgatccctaaatatgtaacgagtggccacaataatctttcagtctattcaaattt-taaaatagtctctgattgtacacttcg 14461785  T
Q  189 ttaatcaaaatagt 202  Q
    ||| ||||||||||    
T  14461784 ttagtcaaaatagt 14461771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 95 - 229
Target Start/End: Original strand, 29686426 - 29686560
Alignment:
Q  95 taatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatc 194  Q
    ||||||||| |||||||| | ||||| |||  ||||||||||||||||| ||| | ||| ||| || ||||||| |  ||| |||||| ||  |||||||    
T  29686426 taatagtcactttggtccatgaatgtataatgagtagtcacaataatccctcaatgtattaaaatttcaaaatactcattgcttgtgcactctgttaatc 29686525  T
Q  195 aaaatagttcatgacgttaaaataattcttcaatg 229  Q
    ||||||||   ||||| |||||||||  |||||||    
T  29686526 aaaatagtctctgacgctaaaataatatttcaatg 29686560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 6217754 - 6217642
Alignment:
Q  90 tggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgt 189  Q
    |||| |||||||||||||||||| | ||||||||   | ||| ||||||| ||| ||| | ||||||| || |||||||||   ||||| ||| ||||||    
T  6217754 tgggataatagtcattttggtccatgaatgtgtagcgaatagccacaatagtccctcaatgtatcaaaatttcaaaatagtccatgattatgcacttcgt 6217655  T
Q  190 taatcaaaatagt 202  Q
    || ||||||||||    
T  6217654 tagtcaaaatagt 6217642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 202
Target Start/End: Original strand, 23159025 - 23159136
Alignment:
Q  91 ggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgtt 190  Q
    ||||||||||||| ||| |||||| |||||||||  | |||| | |||| ||| ||| | ||||||| ||  |||||||| |||||||||||  ||||||    
T  23159025 ggggtaatagtcactttagtccctgaatgtgtaatgattagttataatagtccatcaatgtatcaaaattttaaaatagtatttgattgtgcatttcgtt 23159124  T
Q  191 aatcaaaatagt 202  Q
    | | ||||||||    
T  23159125 agtaaaaatagt 23159136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 124
Target Start/End: Complemental strand, 2707860 - 2707826
Alignment:
Q  90 tggggtaatagtcattttggtccctaaatgtgtaa 124  Q
    ||||||||||||||||||||||||| |||||||||    
T  2707860 tggggtaatagtcattttggtccctgaatgtgtaa 2707826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 221
Target Start/End: Original strand, 8206095 - 8206153
Alignment:
Q  163 aaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataatt 221  Q
    |||||||| ||||||||||| | | |||||||||||||||   ||||||||||||||||    
T  8206095 aaaatagtctttgattgtgcacattgttaatcaaaatagtctctgacgttaaaataatt 8206153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 271 - 329
Target Start/End: Complemental strand, 14468874 - 14468816
Alignment:
Q  271 tattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatga 329  Q
    |||||||||||||| | |||| ||| || ||||||||||||||||||||| | ||||||    
T  14468874 tattttgattaacatagtgcacaattaaggactattttgaaatttcgatacattgatga 14468816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 247
Target Start/End: Complemental strand, 17676894 - 17676748
Alignment:
Q  101 tcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaata 200  Q
    |||||||||||| | |||||||||  ||||||||||| ||||| ||| |  ||| || |  ||||||||| | ||||||||  ||  |||| |||||| |    
T  17676894 tcattttggtccttgaatgtgtaacgagtagtcacaacaatccctcaattaatcgaaatatcaaaatagtctctgattgtgaactatgttagtcaaaaga 17676795  T
Q  201 gttcatgacgttaaaataattcttcaatgttgatattaactcttttc 247  Q
    || | ||| ||||||| ||| |||||||||||| | | |||||||||    
T  17676794 gtccttgatgttaaaacaatccttcaatgttgacactgactcttttc 17676748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 26675378 - 26675241
Alignment:
Q  92 gggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgtta 191  Q
    |||||||||||| |||||| | | |||||||||  | || ||||||||||| || | | ||||||  ||| |||||||| |||||||||||  |  ||||    
T  26675378 gggtaatagtcactttggttcttgaatgtgtaatgactaatcacaataatcttttaatgtatcaatattctaaaatagtctttgattgtgcattctgtta 26675279  T
Q  192 atcaaaatagttcatgacgttaaaataattcttcaatg 229  Q
     ||||||||||  |||||  |||||||||  |||||||    
T  26675278 ctcaaaatagtctatgacactaaaataatctttcaatg 26675241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 229
Target Start/End: Complemental strand, 26946986 - 26946849
Alignment:
Q  92 gggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgtta 191  Q
    |||||||||||| |||||| | | |||||||||  | || ||||||||||| || | | ||||||  ||| |||||||| |||||||||||  |  ||||    
T  26946986 gggtaatagtcactttggttcttgaatgtgtaatgactaatcacaataatcttttaatgtatcaatattctaaaatagtctttgattgtgcattctgtta 26946887  T
Q  192 atcaaaatagttcatgacgttaaaataattcttcaatg 229  Q
     ||||||||||  |||||  |||||||||  |||||||    
T  26946886 ctcaaaatagtctatgacactaaaataatctttcaatg 26946849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 320
Target Start/End: Original strand, 35293811 - 35293860
Alignment:
Q  271 tattttgattaacaaaatgcataataaatgactattttgaaatttcgata 320  Q
    |||||||| ||||| |||||||| | | ||||||||||||||||||||||    
T  35293811 tattttgactaacacaatgcatactcagtgactattttgaaatttcgata 35293860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 94 - 202
Target Start/End: Complemental strand, 917265 - 917157
Alignment:
Q  94 gtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaat 193  Q
    ||||||||||||||||| ||| |||||||||  | ||||||||||  ||| ||| | |||| || ||  |||||||| ||||||||| | |||  || ||    
T  917265 gtaatagtcattttggttcctgaatgtgtaaatattagtcacaatcgtccctcaatgtatcgaaattttaaaatagtctttgattgtacactttatttat 917166  T
Q  194 caaaatagt 202  Q
    |||||||||    
T  917165 caaaatagt 917157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 17675410 - 17675438
Alignment:
Q  95 taatagtcattttggtccctaaatgtgta 123  Q
    |||||||||||||||||||||||||||||    
T  17675410 taatagtcattttggtccctaaatgtgta 17675438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 250
Target Start/End: Complemental strand, 35079065 - 35079025
Alignment:
Q  210 gttaaaataattcttcaatgttgatattaactcttttcata 250  Q
    ||||||||||||  ||||| |||||||||||||||||||||    
T  35079065 gttaaaataatttatcaattttgatattaactcttttcata 35079025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 91 - 247
Target Start/End: Complemental strand, 6728106 - 6727950
Alignment:
Q  91 ggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgtt 190  Q
    ||||| ||||||||||| |||||| |||||||||  | ||||||||||| ||||||| |  |||||| |||||||||||| ||  ||||||| ||  |||    
T  6728106 ggggtgatagtcattttcgtccctgaatgtgtaacgaatagtcacaatagtccttcaatgaatcaaaattccaaaatagtcttccattgtgcactatgtt 6728007  T
Q  191 aatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttc 247  Q
    | ||||||||||   |||| |||||||| | |||||||||||| | |||||||||||    
T  6728006 agtcaaaatagtctttgactttaaaatagtgcttcaatgttgacactaactcttttc 6727950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 91 - 217
Target Start/End: Complemental strand, 31134834 - 31134708
Alignment:
Q  91 ggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgtt 190  Q
    |||||||||||||||||||||||| |||||||||  ||||||||| ||| |||   | | ||| ||| |||||||| |||  |||||||||| ||  |||    
T  31134834 ggggtaatagtcattttggtccctgaatgtgtaacgagtagtcacgatagtcccaaaatgtataaaaattccaaaagagtgattgattgtgcactatgtt 31134735  T
Q  191 aatcaaaatagttcatgacgttaaaat 217  Q
    |||||||||||| | | ||||||||||    
T  31134734 aatcaaaatagtccctcacgttaaaat 31134708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 93 - 218
Target Start/End: Complemental strand, 27464015 - 27463890
Alignment:
Q  93 ggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaa 192  Q
    ||||||||||||| ||||||||||||||||||| ||||  || | || ||  ||| | ||||||| || ||||||||| | || |||||| ||||||||     
T  27464015 ggtaatagtcattgtggtccctaaatgtgtaaggagtaaccatactagtctctcaatgtatcaaaatttcaaaatagtctctggttgtgcacttcgttag 27463916  T
Q  193 tcaaaatagttcatgacgttaaaata 218  Q
     ||||||||||| | |||||||||||    
T  27463915 acaaaatagttcctaacgttaaaata 27463890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 260
Target Start/End: Original strand, 35607217 - 35607310
Alignment:
Q  167 tagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcatatgacgattga 260  Q
    ||||||||||||||||  ||||||| |||||||| |  |||||||||||||||| ||||||| |||| | |||| |||||||||| | ||||||    
T  35607217 tagtttttgattgtgcatttcgttagtcaaaataatctatgacgttaaaataatccttcaatattgacaataacacttttcatataaagattga 35607310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 200
Target Start/End: Complemental strand, 12437042 - 12436944
Alignment:
Q  102 cattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaata 200  Q
    ||||||||||| | ||||| |||  | |||| ||||||||| || ||||||||||| || |||||||||| ||||||||||  | | ||||||||||||    
T  12437042 cattttggtccttgaatgtctaaagattagttacaataatctttgattatatcaaaatttcaaaatagttattgattgtgcattccattaatcaaaata 12436944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 94 - 182
Target Start/End: Complemental strand, 8791994 - 8791906
Alignment:
Q  94 gtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgc 182  Q
    ||||||||||||||||| ||| ||||| |||  ||||| || |||| || |||||| ||||||| ||| |||| ||| |||||||||||    
T  8791994 gtaatagtcattttggtgccttaatgtataacaagtagccataatagtcgttcattgtatcaaaattctaaaacagtctttgattgtgc 8791906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 271 - 375
Target Start/End: Original strand, 30050595 - 30050699
Alignment:
Q  271 tattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatgaactattatgactattaattataaatttagggaccaaaataa 370  Q
    |||||||| ||||||| |||||||| |  ||||||||||||||||||||| | | | | |||||| || ||| | |||| ||||| |  |||||||||||    
T  30050595 tattttgactaacaaattgcataatcatagactattttgaaatttcgatacattaagggactattttggctaatcattacaaattcaaagaccaaaataa 30050694  T
Q  371 ctatt 375  Q
    |||||    
T  30050695 ctatt 30050699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 147
Target Start/End: Complemental strand, 34177595 - 34177539
Alignment:
Q  91 ggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttca 147  Q
    |||||||||||||||||||||||| |||||||||  |||||  |||||| |||||||    
T  34177595 ggggtaatagtcattttggtccctgaatgtgtaatgagtagctacaatagtccttca 34177539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 44391527 - 44391607
Alignment:
Q  90 tggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagt 170  Q
    |||||| |||| ||||||| ||||||||||||||   |||||||| |||| || |||| ||||||||| ||| ||||||||    
T  44391527 tggggtgatagacattttgttccctaaatgtgtagcgagtagtcagaatagtcattcaatatatcaaaattctaaaatagt 44391607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 202
Target Start/End: Original strand, 33747277 - 33747376
Alignment:
Q  103 attttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagt 202  Q
    ||||||| || | |||||||||  ||||||||||||| | ||||| | |||| || || ||||| ||| ||||||| ||| |||||||| ||||||||||    
T  33747277 attttggaccttgaatgtgtaacaagtagtcacaatagttcttcaatgtatcgaaatttcaaaacagtatttgattctgcacttcgttagtcaaaatagt 33747376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 38901478 - 38901585
Alignment:
Q  93 ggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaa 192  Q
    |||| ||||||||||| ||| |||| ||||||  ||||||||||||| ||| ||||| |||  || || ||||||||||  ||||||||| |||  |||     
T  38901478 ggtagtagtcattttgatccttaaacgtgtaacgagtagtcacaatagtccctcattgtattgaaattacaaaatagttcatgattgtgcgctttattag 38901577  T
Q  193 tcaaaata 200  Q
    ||||||||    
T  38901578 tcaaaata 38901585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 16192353 - 16192263
Alignment:
Q  92 gggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgc 182  Q
    |||| ||||||||||| || | | |||||||||  |||||||| |||| ||||||| | ||||||| ||  |||||||||| |||||||||    
T  16192353 gggtgatagtcattttagtacttgaatgtgtaacaagtagtcataatattccttcaatgtatcaaaattttaaaatagtttctgattgtgc 16192263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 217
Target Start/End: Complemental strand, 27901009 - 27900887
Alignment:
Q  95 taatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatc 194  Q
    ||||||||| |||| ||| | |||||||||  |||||||| |||| ||||||| | ||| |||  |  |||||||| | |||||||||  || |||| ||    
T  27901009 taatagtcaatttgatccttgaatgtgtaatgagtagtcagaatagtccttcaatgtataaaaaatttaaaatagtctatgattgtgcaattagttagtc 27900910  T
Q  195 aaaatagttcatgacgttaaaat 217  Q
     ||||||| ||||||||||||||    
T  27900909 gaaatagtccatgacgttaaaat 27900887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 139
Target Start/End: Original strand, 32669783 - 32669829
Alignment:
Q  93 ggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaata 139  Q
    |||||||||||||||||||| | |||||||||  |||||||||||||    
T  32669783 ggtaatagtcattttggtccatgaatgtgtaacgagtagtcacaata 32669829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 38445271 - 38445173
Alignment:
Q  99 agtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaa 197  Q
    |||||||||| | ||| |||||| ||  | ||||||||||| ||||| | | |||| || ||| |||||||| ||||||||||| |||| |||||||||    
T  38445271 agtcattttgattcctgaatgtgcaacaaatagtcacaatagtcctttaatgtatcgaaattctaaaatagtctttgattgtgcacttccttaatcaaa 38445173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 8234050 - 8234095
Alignment:
Q  95 taatagtcattttggtccctaaatgtgtaagcagtagtcacaataa 140  Q
    |||||||||||||||||| |||||||||||  ||||||| ||||||    
T  8234050 taatagtcattttggtccttaaatgtgtaatgagtagtcgcaataa 8234095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 8778986 - 8779059
Alignment:
Q  129 tagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagt 202  Q
    ||||||| ||| ||| ||| ||||||||| || ||||||||||| ||||||||| ||| |||| | ||||||||    
T  8778986 tagtcacgatagtccctcaatatatcaaaatttcaaaatagtttctgattgtgcactttgttagttaaaatagt 8779059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 19464225 - 19464322
Alignment:
Q  105 tttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagt 202  Q
    |||||||| |||||||||||  ||||||||||||| ||||||| | ||||||| ||  ||||| || | ||||||  | || ||||| ||||||||||    
T  19464225 tttggtccttaaatgtgtaacaagtagtcacaatagtccttcaatgtatcaaaatttaaaaatggtctctgattgaacactccgttagtcaaaatagt 19464322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 200
Target Start/End: Original strand, 36144785 - 36144889
Alignment:
Q  95 taatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatc 194  Q
    |||||||||||||||||| | ||| |||||  |||| |||||||| ||   || | ||||||| |||||||||| | |||||||||||  || |||||||    
T  36144785 taatagtcattttggtccttgaatatgtaatgagtaatcacaatactctcccaatgtatcaaaattccaaaataatctttgattgtgc-atttgttaatc 36144883  T
Q  195 aaaata 200  Q
    ||||||    
T  36144884 aaaata 36144889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 179
Target Start/End: Original strand, 39162405 - 39162490
Alignment:
Q  94 gtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattg 179  Q
    ||||||||||||||||||| | |||| ||||  |||| |||||||| | ||||| | |||  || || ||||||||||||||||||    
T  39162405 gtaatagtcattttggtccttgaatgcgtaatgagtaatcacaatagtacttcaatgtattgaaatttcaaaatagtttttgattg 39162490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 182
Target Start/End: Original strand, 45679514 - 45679591
Alignment:
Q  105 tttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgc 182  Q
    ||||||| || |||||||||  ||||||||||||||||| |||   ||| ||| ||  ||||||||||||||||||||    
T  45679514 tttggtctctgaatgtgtaacgagtagtcacaataatccatcaacgtattaaaattttaaaatagtttttgattgtgc 45679591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 49880092 - 49880047
Alignment:
Q  332 tattatgactattaattataaatttagggaccaaaataactattac 377  Q
    ||||||||||||| |||| | ||| |||||||||||||||||||||    
T  49880092 tattatgactatttattacatattcagggaccaaaataactattac 49880047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 251
Target Start/End: Original strand, 8987233 - 8987321
Alignment:
Q  163 aaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcatat 251  Q
    |||||||| ||| ||| ||| |||||||||||  ||||||   | || |||||||| ||||||||||  || |||||||||||||||||    
T  8987233 aaaatagtatttaattatgcacttcgttaatctgaatagtctcttacattaaaatagttcttcaatgccgacattaactcttttcatat 8987321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 147
Target Start/End: Complemental strand, 32670086 - 32670034
Alignment:
Q  95 taatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttca 147  Q
    |||||||||||||| ||||| |||||||||  |||| |||||||| |||||||    
T  32670086 taatagtcattttgatccctgaatgtgtaacgagtattcacaatagtccttca 32670034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 136 - 250
Target Start/End: Original strand, 23474548 - 23474662
Alignment:
Q  136 aataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgata 235  Q
    |||| ||||||| | ||||||| ||  ||||||||| |||||||||| ||||||||||||||||||||  | | |||||||||||   |||||| ||| |    
T  23474548 aatagtccttcaatgtatcaaaattttaaaatagttattgattgtgcacttcgttaatcaaaatagttttttatgttaaaataatctctcaatggtgaca 23474647  T
Q  236 ttaactcttttcata 250  Q
    |||||||||||||||    
T  23474648 ttaactcttttcata 23474662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 92 - 251
Target Start/End: Complemental strand, 46720126 - 46719967
Alignment:
Q  92 gggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgtta 191  Q
    |||||||||||||| |||| ||| ||||  |||  ||||||||||||| ||| ||| | |||  || ||  ||||| || ||||||||||| ||| ||||    
T  46720126 gggtaatagtcattatggttcctgaatgaataacaagtagtcacaatagtccctcaatgtattgaaattttaaaatggtatttgattgtgcactttgtta 46720027  T
Q  192 atcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcatat 251  Q
     |||||||||||  ||||||||||||| | |||| || || |||||||||||||| ||||    
T  46720026 gtcaaaatagtttttgacgttaaaatagtccttcgatatttatattaactctttttatat 46719967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 99 - 247
Target Start/End: Original strand, 14669237 - 14669385
Alignment:
Q  99 agtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaa 198  Q
    |||||||||||||| | |||||||||  ||||||||||| ||||| ||| |  ||| || |  ||||||||| | ||||||||| ||  |||| ||||||    
T  14669237 agtcattttggtccttgaatgtgtaacgagtagtcacaacaatccctcaattaatcgaaatatcaaaatagtctctgattgtgcactatgttagtcaaaa 14669336  T
Q  199 tagttcatgacgttaaaataattcttcaatgttgatattaactcttttc 247  Q
    |||| | ||||||||||| ||| |||| ||||||| | | |||||||||    
T  14669337 tagtccttgacgttaaaacaatccttctatgttgacactgactcttttc 14669385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 251
Target Start/End: Complemental strand, 32996613 - 32996452
Alignment:
Q  90 tggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgt 189  Q
    |||| |||| ||||||||||||| | ||||| |||  | |||| |||||| ||| ||| |  |||||| ||| |||||||| | ||||||||| ||| ||    
T  32996613 tgggataatggtcattttggtccttgaatgtctaatgaatagtgacaatagtccctcaatgcatcaaaattctaaaatagtctctgattgtgcactttgt 32996514  T
Q  190 taatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcatat 251  Q
    |||||||||||||  | |||| ||||||||| |  |||| || | | |||||||||||||||    
T  32996513 taatcaaaatagtctacgacgctaaaataatcccccaatattcacactaactcttttcatat 32996452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 94 - 202
Target Start/End: Original strand, 34703628 - 34703735
Alignment:
Q  94 gtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaat 193  Q
    ||||||||||||||| ||| ||||||| |||  ||||||||||||| ||| ||| | ||||||||||  |||||||| | | ||||| | ||||||| ||    
T  34703628 gtaatagtcattttgatccataaatgtataacgagtagtcacaatagtccatcaatgtatcaaattt-taaaatagtctctaattgttcacttcgttgat 34703726  T
Q  194 caaaatagt 202  Q
    |||||||||    
T  34703727 caaaatagt 34703735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 265 - 338
Target Start/End: Original strand, 23457810 - 23457883
Alignment:
Q  265 aaaaattattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatgaactattatg 338  Q
    ||||| |||||||||||||||| |||| ||| ||| |||||||| ||||||||||| | ||| | |||||||||    
T  23457810 aaaaactattttgattaacaaagtgcacaatcaataactattttaaaatttcgatacattgaaggactattatg 23457883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 139
Target Start/End: Original strand, 18942733 - 18942781
Alignment:
Q  91 ggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaata 139  Q
    |||||||||||||||||||||||| |||||||||| | |||||| ||||    
T  18942733 ggggtaatagtcattttggtccctgaatgtgtaaggaatagtcataata 18942781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 23441521 - 23441561
Alignment:
Q  163 aaaatagtttttgattgtgctcttcgttaatcaaaatagtt 203  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  23441521 aaaatagttattgattgtgcacttcgttaatcaaaatagtt 23441561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 202
Target Start/End: Original strand, 24127149 - 24127261
Alignment:
Q  90 tggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgt 189  Q
    ||||||||||||||||||| ||| |||||||| ||  || || ||||||| ||| ||| | |||  || ||| |||| |||| |||||||||| | ||||    
T  24127149 tggggtaatagtcattttgatccgtaaatgtgcaacgagcaggcacaatagtccatcaatgtattgaaattctaaaaaagttcttgattgtgcacctcgt 24127248  T
Q  190 taatcaaaatagt 202  Q
    || ||||||||||    
T  24127249 tagtcaaaatagt 24127261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 23457853 - 23457766
Alignment:
Q  163 aaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcata 250  Q
    ||||||||| |||||||||| ||| ||||||||||||||||  |   ||||||||| |   |||||| ||| ||||||||||||||||    
T  23457853 aaaatagttattgattgtgcactttgttaatcaaaatagttttttgtgttaaaatagtctctcaatggtgacattaactcttttcata 23457766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 379
Target Start/End: Complemental strand, 30601346 - 30601295
Alignment:
Q  328 gaactattatgactattaattataaatttagggaccaaaataactattaccc 379  Q
    ||||||||||||||| | |||| | |||||||||||||| ||||||||||||    
T  30601346 gaactattatgactaatcattacacatttagggaccaaagtaactattaccc 30601295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 154
Target Start/End: Original strand, 21401749 - 21401810
Alignment:
Q  93 ggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatc 154  Q
    ||||||||||||||||||| ||||||||||||  |||||  |||||| ||| ||| ||||||    
T  21401749 ggtaatagtcattttggtctctaaatgtgtaacgagtagctacaatagtccctcactatatc 21401810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 265 - 338
Target Start/End: Complemental strand, 23441564 - 23441491
Alignment:
Q  265 aaaaattattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatgaactattatg 338  Q
    ||||| ||||||||||||| || |||| ||| ||| |||||||| ||||||||||| | ||| | |||||||||    
T  23441564 aaaaactattttgattaacgaagtgcacaatcaataactattttaaaatttcgatacattgaaggactattatg 23441491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 316
Target Start/End: Complemental strand, 19228851 - 19228803
Alignment:
Q  268 aattattttgattaacaaaatgcataataaatgactattttgaaatttc 316  Q
    ||||||||||||||||||| |||||||| ||| |||| |||| ||||||    
T  19228851 aattattttgattaacaaactgcataatcaataactactttgcaatttc 19228803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 23532913 - 23532953
Alignment:
Q  163 aaaatagtttttgattgtgctcttcgttaatcaaaatagtt 203  Q
    ||||||||| |||||||||  ||||||||||||||||||||    
T  23532913 aaaatagttattgattgtggacttcgttaatcaaaatagtt 23532953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 251
Target Start/End: Original strand, 21601904 - 21602063
Alignment:
Q  91 ggggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgtt 190  Q
    |||||||| ||||||||||||| | ||| |||||  | ||||||||||| ||| ||| | ||||||| |||||||||||| | ||||||||| | | |||    
T  21601904 ggggtaatggtcattttggtcc-tgaatatgtaacaaatagtcacaatagtccatcaatgtatcaaaattccaaaatagtctctgattgtgcacgttgtt 21602002  T
Q  191 aatcaaaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcatat 251  Q
    | ||||| |||| | ||||  ||||||||| | ||||| || ||| |||||||||||||||    
T  21602003 agtcaaagtagtccctgacactaaaataatccctcaatattcataataactcttttcatat 21602063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 143 - 220
Target Start/End: Complemental strand, 4493270 - 4493193
Alignment:
Q  143 cttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgttaaaataat 220  Q
    ||||||| ||||||| ||| |||||| || ||||| |||||||| |||| ||||||||||| || |||||||||||||    
T  4493270 cttcattgtatcaaaattctaaaataattcttgatagtgctctttgttagtcaaaatagtttataacgttaaaataat 4493193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 251
Target Start/End: Complemental strand, 14524047 - 14523893
Alignment:
Q  97 atagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaa 196  Q
    |||| ||||||| || || |||||||||  |||||||| |||| ||| | | | | || || || |||||||||| |||||||| | |||||||| |||     
T  14524047 atagacattttgatctctgaatgtgtaacaagtagtcataatagtcccttaatgtgtcgaaatttcaaaatagttcttgattgttcacttcgttagtcat 14523948  T
Q  197 aatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcatat 251  Q
    ||||||   || ||| |||||||| |||||||  |||| ||||||||||||||||    
T  14523947 aatagtctctggcgtcaaaataatccttcaatactgatgttaactcttttcatat 14523893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 260
Target Start/End: Original strand, 18080183 - 18080346
Alignment:
Q  96 aatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatca 195  Q
    |||||||||||||||||||||||||||||  | ||||||||||  ||||||| | |||  || ||   ||||||||| |  || |||  ||||||| |||    
T  18080183 aatagtcattttggtccctaaatgtgtaacaaatagtcacaatggtccttcaatgtattgaaatt-gtaaatagtttctagttatgcatttcgttagtca 18080281  T
Q  196 aaatagttcatgacgttaaaataattcttcaatgttgatattaactcttttcatatgacgattga 260  Q
    ||||||||  |||| | |||||||||| |||||  || |||||| | ||||||||| | ||||||    
T  18080282 aaatagtttctgacatcaaaataattcctcaatactgttattaattattttcatataaggattga 18080346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 217
Target Start/End: Complemental strand, 6915601 - 6915499
Alignment:
Q  114 taaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaatagttcatgacgtta 213  Q
    |||||||||||  |||| |||||||| ||||| ||  ||||||| ||  |||||| |||||||||||||  |  ||||||||||||||||| | ||||||    
T  6915601 taaatgtgtaataagtaatcacaatagtccttaatg-tatcaaaattttaaaataatttttgattgtgcattatgttaatcaaaatagttctttacgtta 6915503  T
Q  214 aaat 217  Q
    ||||    
T  6915502 aaat 6915499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 200
Target Start/End: Complemental strand, 8340411 - 8340307
Alignment:
Q  95 taatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatc 194  Q
    |||||||||||||||| | | ||||| |||  ||||||||||| | ||||| | | ||||||| ||| |||||| |||||||||||||  |||| || ||    
T  8340411 taatagtcattttggttcttgaatgtataatgagtagtcacaacagtcctttaatgtatcaaaattc-aaaataatttttgattgtgcatttcgctagtc 8340313  T
Q  195 aaaata 200  Q
    ||||||    
T  8340312 aaaata 8340307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 17488302 - 17488213
Alignment:
Q  92 gggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtg 181  Q
    |||||| |||||||||| ||||| |||||||||  ||||||||||||| ||| ||| | || | || || |||||||||  |||||||||    
T  17488302 gggtaacagtcattttgctccctgaatgtgtaacaagtagtcacaatagtccctcaatgtagcgaaatttcaaaatagtccttgattgtg 17488213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 271 - 384
Target Start/End: Original strand, 21600639 - 21600751
Alignment:
Q  271 tattttgattaacaaaatgcataataaatgactattttgaaatttcgatatactgatgaactattatgactattaattataaatttagggaccaaaataa 370  Q
    |||||||| | ||| |||||| ||| || |||||||||||| ||| |||| | ||||| ||||||||||||| | |||| | ||| || ||||||| | |    
T  21600639 tattttgacttacagaatgcacaatcaaagactattttgaatttt-gatacattgatggactattatgactaatcattacacattcagagaccaaattga 21600737  T
Q  371 ctattacccaaaaa 384  Q
    |||||||| |||||    
T  21600738 ctattaccgaaaaa 21600751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 182
Target Start/End: Complemental strand, 21600745 - 21600657
Alignment:
Q  93 ggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgc 182  Q
    ||||||||||| ||||||| || |||||||||  | |||||| |||| ||| ||| | ||||||| || ||||||||| |||||||||||    
T  21600745 ggtaatagtcaatttggtctctgaatgtgtaatgattagtcataatagtccatcaatgtatcaaaatt-caaaatagtctttgattgtgc 21600657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 124
Target Start/End: Original strand, 32169925 - 32169954
Alignment:
Q  95 taatagtcattttggtccctaaatgtgtaa 124  Q
    ||||||||||||||||||||||||||||||    
T  32169925 taatagtcattttggtccctaaatgtgtaa 32169954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 93 - 228
Target Start/End: Complemental strand, 6788594 - 6788459
Alignment:
Q  93 ggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaa 192  Q
    |||||||||||||||  ||| |||||||||||  | |||||| |||| || |||| | ||||||| ||  |||||||||| ||||||||| ||| ||||     
T  6788594 ggtaatagtcattttcatccttaaatgtgtaacaaatagtcataatagtcattcaatgtatcaaaattttaaaatagtttctgattgtgcactttgttag 6788495  T
Q  193 tcaaaatagttcatgacgttaaaataattcttcaat 228  Q
    ||| ||||||   ||| | ||||||||| |||||||    
T  6788494 tcagaatagtctctgatgctaaaataatccttcaat 6788459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 182
Target Start/End: Original strand, 11281359 - 11281438
Alignment:
Q  103 attttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgc 182  Q
    |||||||| ||| |||||||||  | || ||||||||||  |||||||||||||| ||  |||||||||| |||||||||    
T  11281359 attttggtacctgaatgtgtaacaaataatcacaataatatttcattatatcaaaattttaaaatagtttctgattgtgc 11281438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 215
Target Start/End: Original strand, 40124261 - 40124384
Alignment:
Q  92 gggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgtta 191  Q
    |||||||||||| |||||||| | |||||||||  ||||||||||||| ||| | | | |||| || ||  ||||| || | ||||||||| || |||||    
T  40124261 gggtaatagtcactttggtccttgaatgtgtaacgagtagtcacaatagtccattaatgtatcgaaattttaaaatggtctctgattgtgcactccgtta 40124360  T
Q  192 atcaaaatagttcatgacgttaaa 215  Q
     |||||||||| ||| || |||||    
T  40124361 gtcaaaatagtccataacattaaa 40124384  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 20167700 - 20167654
Alignment:
Q  93 ggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaata 139  Q
    |||||||||||||||||||  |||||||||||  |||||||||||||    
T  20167700 ggtaatagtcattttggtctttaaatgtgtaacaagtagtcacaata 20167654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 199
Target Start/End: Complemental strand, 18903252 - 18903171
Alignment:
Q  118 tgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgttaatcaaaat 199  Q
    |||||||  ||||||||||||| || |||| | |||| || ||| |||||||||| ||||||||| ||  ||||||||||||    
T  18903252 tgtgtaacgagtagtcacaatagtcattcaatgtatcgaaattctaaaatagtttctgattgtgcactatgttaatcaaaat 18903171  T

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Target: scaffold0114 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 34953 - 34907
Alignment:
Q  332 tattatgactattaattataaatttagggaccaaaataactattacc 378  Q
    ||||||||||||| |||| | ||| ||||||||||||||||||||||    
T  34953 tattatgactatttattacatattcagggaccaaaataactattacc 34907  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 202
Target Start/End: Original strand, 81292 - 81402
Alignment:
Q  92 gggtaatagtcattttggtccctaaatgtgtaagcagtagtcacaataatccttcattatatcaaatttccaaaatagtttttgattgtgctcttcgtta 191  Q
    ||||||||||||||||| ||| | |||||| ||  ||||| ||||||| |   | ||| |||  || || ||||||||||| ||||||||| ||||||||    
T  81292 gggtaatagtcattttgatccttgaatgtgcaatgagtagccacaatagtatctgattgtattgaaatttcaaaatagtttatgattgtgcacttcgtta 81391  T
Q  192 atcaaaatagt 202  Q
     ||||||||||    
T  81392 gtcaaaatagt 81402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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