View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16151_low_11 (Length: 457)
Name: NF16151_low_11
Description: NF16151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16151_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 10 - 435
Target Start/End: Original strand, 8756807 - 8757232
Alignment:
| Q |
10 |
attattctaaatgtcaggaactttttgctcagcataatattattaggttgcttgttggtcatttagcttttgaaactgttgaggaacatagtaagtatgc |
109 |
Q |
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| T |
8756807 |
attatcctaaatgtcaggaactttttgctcagcataatattattaggttgcttgttggtcatttagcttttgaaactgttgaggaacatagtaagtatgc |
8756906 |
T |
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| Q |
110 |
tattgttagtatgaaagcgaattcgattcacgccgctgttgttatggctagtaataataataattctagctctaatcttaatcccaagaagggaactgaa |
209 |
Q |
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| T |
8756907 |
tattgttagtatgaaagcgaattcgattcacgccgctgttgttatggctagtaataataataattctagctctaatcttaatcccaagaagggaactgaa |
8757006 |
T |
|
| Q |
210 |
aatgaagatggtgttgttgttggtggtggcaataaacatggtcgtgtatcgcatcatccattaggtgaaagaccaagaaatctgcatagagtgatcacaa |
309 |
Q |
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| T |
8757007 |
aatgaagatggtgttgttgttggtggtggcaataaacatggtcgtgtatcacatcatccattaggtgaaagaccaagaaatctgcatagagtgatcacaa |
8757106 |
T |
|
| Q |
310 |
gtactatggcaattcatgctgcttccaagcagcccaatgaaggaaatgaagcaaatcaaaatcagaacattttggccaattccaatactcctaatggtaa |
409 |
Q |
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| T |
8757107 |
gtactatggcaattcatgctgcttccaagcagcccaatgaaggaaatgaagcaaatcaaaatcagaacattttggccaattccaatactcctaatggtaa |
8757206 |
T |
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| Q |
410 |
tggacttggtaatggtaatggtaatg |
435 |
Q |
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| T |
8757207 |
tggactcggtaatggtaatggtaatg |
8757232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 16 - 120
Target Start/End: Complemental strand, 32031589 - 32031485
Alignment:
| Q |
16 |
ctaaatgtcaggaactttttgctcagcataatattattaggttgcttgttggtcatttagcttttgaaactgttgaggaacatagtaagtatgctattgt |
115 |
Q |
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|||||||||| || |||||||||||||||||||| ||||||||||||| |||| | ||||||||||||||| | ||||||||||| ||||| ||||| |
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| T |
32031589 |
ctaaatgtcaagatgtttttgctcagcataatattgttaggttgcttgtgagtcacattgcttttgaaactgttcaagaacatagtaaatatgcaattgt |
32031490 |
T |
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| Q |
116 |
tagta |
120 |
Q |
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||||| |
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| T |
32031489 |
tagta |
32031485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 28036333 - 28036238
Alignment:
| Q |
18 |
aaatgtcaggaactttttgctcagcataatattattaggttgcttgttggtcatttagcttttgaaactgttgaggaacatagtaagtatgctatt |
113 |
Q |
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|||||||| || | |||||||||| ||||| |||| | ||||||||| ||||| | ||||||||||| || | ||||||||||||||| ||||| |
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| T |
28036333 |
aaatgtcaagatcattttgctcagaataatgctattcgtttgcttgttagtcatcttgcttttgaaaccattcaagaacatagtaagtattctatt |
28036238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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