View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16151_low_12 (Length: 437)
Name: NF16151_low_12
Description: NF16151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16151_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 83 - 420
Target Start/End: Original strand, 3248999 - 3249336
Alignment:
| Q |
83 |
ttgatttcatcccaaaaagaggattagaaatcacaacatcatcctcattttcttcctcatgcaatttctctgtgtcatgtagttcattcaagcttccaag |
182 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3248999 |
ttgagttcatcccaaaaagaggattagaaatcacaacatcatcctcatcttcttcctcatgcaatttctctgtgtcatgtagttcattcaagcttccaag |
3249098 |
T |
|
| Q |
183 |
tcgtaaatggaaatcaggggagttggttatgttgtgtagttcagtagcagcctgttcagaatgtgtatttttagtattggttgtttcaaggtcgaaaatc |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3249099 |
tcgtaaatggaaatcaggggagttggttatgttgtgtagttcagtagcagcctgttcagaatgtgtatttttagtattggttgtttcaaggtcgaaaatc |
3249198 |
T |
|
| Q |
283 |
ttaacaggggagttcacaggctcagcagtttctttatgcatcaaatcagtgccctttagattctttctaggcagagagtgtgagtcttttctagcaccag |
382 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3249199 |
ttaacaggggagttcacaggctcagcagtttctttatgcatcaaatcagtgccctttagattctttctatgcagagagtgtgagtcttttctagcaccag |
3249298 |
T |
|
| Q |
383 |
agaccttgcccaacatgtcagcttcaacctgtttcttg |
420 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||| |
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| T |
3249299 |
agaccttgcccaacatgtcagcatcaacctgtttcttg |
3249336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 118 - 420
Target Start/End: Complemental strand, 36905596 - 36905294
Alignment:
| Q |
118 |
acatcatcctcattttcttcctcatgcaatttctctgtgtcatgtagttcattcaagcttccaagtcgtaaatggaaatcaggggagttggttatgttgt |
217 |
Q |
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||||||||||||||| ||||||||||||| || |||||| |||||| ||||||||||||||||| |||||||| |||||| ||| ||||||||||||| |
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|
| T |
36905596 |
acatcatcctcatttccttcctcatgcaagttacctgtgttatgtaggtcattcaagcttccaagacgtaaatgagaatcagaggaattggttatgttgt |
36905497 |
T |
|
| Q |
218 |
gtagttcagtagcagcctgttcagaatgtgtatttttagtattggttgtttcaaggtcgaaaatcttaacaggggagttcacaggctcagcagtttcttt |
317 |
Q |
| |
|
||||||||||||||||||||| ||| |||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||| |
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| T |
36905496 |
gtagttcagtagcagcctgtttagattgtgcattttcagtattggtggtttcaaggtcgaaaatcttaacaggggagttcacaaactcagcaatatcttt |
36905397 |
T |
|
| Q |
318 |
atgcatcaaatcagtgccctttagattctttctaggcagagagtgtgagtcttttctagcaccagagaccttgcccaacatgtcagcttcaacctgtttc |
417 |
Q |
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|||||||||||||| ||| | ||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| |||| |||||||||||| |
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| T |
36905396 |
atgcatcaaatcagagccatctagattcttggtaggcagagagtgtgagtcttttcaagcaccagataccttgcccaacatgacagcatcaacctgtttc |
36905297 |
T |
|
| Q |
418 |
ttg |
420 |
Q |
| |
|
||| |
|
|
| T |
36905296 |
ttg |
36905294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 36905722 - 36905621
Alignment:
| Q |
16 |
agatgaattgtactatcttcctgcaacctgtcaaaaggattatgtagagttaaagcagagggtgattttgatttcatcccaaaaagaggattagaaatca |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
36905722 |
agatgaattgcactatcttcctgcaacctgttaaaaggattatgtagagttaaagcagagggtgattttgagttcatcccaaaaagaggatttgaaatca |
36905623 |
T |
|
| Q |
116 |
ca |
117 |
Q |
| |
|
|| |
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|
| T |
36905622 |
ca |
36905621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 61
Target Start/End: Original strand, 3248952 - 3248998
Alignment:
| Q |
15 |
gagatgaattgtactatcttcctgcaacctgtcaaaaggattatgta |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
3248952 |
gagatgaattgtactatcttcctgcaacctgtcaaaagtattatgta |
3248998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 134 - 420
Target Start/End: Original strand, 28102423 - 28102709
Alignment:
| Q |
134 |
cttcctcatgcaatttctctgtgtcatgtagttcattcaagcttccaagtcgtaaatggaaatcaggggagttggttatgttgtgtagttcagtagcagc |
233 |
Q |
| |
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||||||||||||| | ||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
28102423 |
cttcctcatgcaagtactcggtgtcatgtaggtcattcaagcttccaagtcgtaaatgagaatcaggggagttggttatgttgtgtagttcagtagcagc |
28102522 |
T |
|
| Q |
234 |
ctgttcagaatgtgtatttttagtattggttgtttcaaggtcgaaaatcttaacaggggagttcacaggctcagcagtttctttatgcatcaaatcagtg |
333 |
Q |
| |
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||||||||| |||||||||| | ||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| | |
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| T |
28102523 |
ctgttcagattgtgtattttcattattggtggtttcaaggtcgaaaatcttaacaggggagttcacatgctcatcagtttctttatgcatcaaatcagag |
28102622 |
T |
|
| Q |
334 |
ccctttagattctttctaggcagagagtgtgagtcttttctagcaccagagaccttgcccaacatgtcagcttcaacctgtttcttg |
420 |
Q |
| |
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|| | ||||||||| ||||| ||||||||||||||||||| ||||||||||| |||||||||| ||||||| ||||||||||||||| |
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|
| T |
28102623 |
ccatctagattcttgctaggaagagagtgtgagtcttttcgagcaccagagagcttgcccaacgtgtcagcatcaacctgtttcttg |
28102709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 16 - 117
Target Start/End: Original strand, 28102281 - 28102382
Alignment:
| Q |
16 |
agatgaattgtactatcttcctgcaacctgtcaaaaggattatgtagagttaaagcagagggtgattttgatttcatcccaaaaagaggattagaaatca |
115 |
Q |
| |
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|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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| T |
28102281 |
agatgaattgcactatcttcctgcaacccatcaaaaggattatgtagagttaaagcagagggtgattttgagttcatcccaaaaagaggatttaaaatca |
28102380 |
T |
|
| Q |
116 |
ca |
117 |
Q |
| |
|
|| |
|
|
| T |
28102381 |
ca |
28102382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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