View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16151_low_14 (Length: 326)
Name: NF16151_low_14
Description: NF16151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16151_low_14 |
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| [»] chr8 (7 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 326
Target Start/End: Complemental strand, 38321626 - 38321313
Alignment:
| Q |
13 |
aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccc |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38321626 |
aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccc |
38321527 |
T |
|
| Q |
113 |
cagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38321526 |
cagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttga |
38321427 |
T |
|
| Q |
213 |
gtaacaatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctc |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38321426 |
gtaacaatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctc |
38321327 |
T |
|
| Q |
313 |
atcatcctttcagc |
326 |
Q |
| |
|
|||||||||||||| |
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|
| T |
38321326 |
atcatcctttcagc |
38321313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 38300876 - 38300568
Alignment:
| Q |
18 |
atataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||| || || |||| ||| ||||||||||||||||||| |||||| ||| |||||||||| | |||| |
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| T |
38300876 |
atataaacttacatcaaataggccgtcagataaagagtttaacttctcttgaaatggcatgctagaagattggtcctggataattctttgcacgcaagaa |
38300777 |
T |
|
| Q |
118 |
gaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaac |
217 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| | || |||||||||||||||||| |
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| T |
38300776 |
ggagtacttttgctagaatacttgtcaaatagcatgtacaacttgctctttacttgttgcaacttcctttcacgtgttgatgcatcaagttttgagtaac |
38300677 |
T |
|
| Q |
218 |
aatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatcat |
317 |
Q |
| |
|
||| ||||||||| |||| ||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
38300676 |
aattagccaatgttgaaagcttaatccttgggtcaagaaccgctcccattgcaagaacaacactatactcatcccaatatttctcaaacttggtcagcat |
38300577 |
T |
|
| Q |
318 |
cctttcagc |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
38300576 |
cctttcagc |
38300568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 326
Target Start/End: Complemental strand, 38317531 - 38317218
Alignment:
| Q |
13 |
aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccc |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||||||| | | |
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| T |
38317531 |
aatatatataaacttacattgaataggccgtgagataaagactttaatttcttttgcaatggcatggtagaagattggtcctgagtagttctttttaggc |
38317432 |
T |
|
| Q |
113 |
cagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttga |
212 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| || |||| || |||||||||||| |
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| T |
38317431 |
cagaagaagtgcttttgctagaatacttgtcaaatagcatgtacaactttctctttactagttgcaacttctgctcgcaggttgatggatcaagttttga |
38317332 |
T |
|
| Q |
213 |
gtaacaatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctc |
312 |
Q |
| |
|
|||||||| |||||| || |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
38317331 |
gtaacaataagccaacgtcgaaaacttcatccgtgggtcaagaactgctcccagtgcaagaacaacactatactcatcccaatatttgtcaaactcgctc |
38317232 |
T |
|
| Q |
313 |
atcatcctttcagc |
326 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
38317231 |
atcatcctttcagc |
38317218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 24 - 324
Target Start/End: Complemental strand, 38309517 - 38309217
Alignment:
| Q |
24 |
acttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaagaaata |
123 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||| || |||||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||| || |
|
|
| T |
38309517 |
acttacatcaaataggccctgagataaagactttaacttcttttgcaatggcacactagaagattggtcctgaattgttctttgcacgccagaagaagta |
38309418 |
T |
|
| Q |
124 |
cttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaatgag |
223 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||||||| |||||||||| |||||||||||||| |||| || ||| ||||||||||||||||| || |
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|
| T |
38309417 |
cttttgcaagaattcttgtgaaatagcatgtacaacttgctctttacttgctgcaacttcctttcgcaggttgatgcattaagttttgagtaacaataag |
38309318 |
T |
|
| Q |
224 |
ccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatcatcctttc |
323 |
Q |
| |
|
||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||| |
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| T |
38309317 |
ccaatgtggaaagctttatccttgggtcaagaaccgctcccaatgcaagaacaacactatactcttcccaatatttctcaaacttggtcaacatcctttc |
38309218 |
T |
|
| Q |
324 |
a |
324 |
Q |
| |
|
| |
|
|
| T |
38309217 |
a |
38309217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 38326369 - 38326063
Alignment:
| Q |
20 |
ataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccagaaga |
119 |
Q |
| |
|
|||||||||| |||||| ||||||||| ||||||| | ||||||||||||| |||| | ||||||| | |||||| ||||||||||| |||||||| |
|
|
| T |
38326369 |
ataaacttaccccaaatataccgtgagataaagacttggagttcttttgcaatgacatggtcgaagattggccctgaacagttctttgcatgccagaaga |
38326270 |
T |
|
| Q |
120 |
aatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaacaa |
219 |
Q |
| |
|
| ||| || ||||||||||||| ||||||||||||||||||| || |||||| |||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
38326269 |
agtacgttggctagaatacttgccaaatagcatgtacaacttcgtccttacttgttgcaacttcctttcacaggttgatgcatcaagttttgagtaacaa |
38326170 |
T |
|
| Q |
220 |
tgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatcatcc |
319 |
Q |
| |
|
| ||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||| ||||||||||||||||||| |
|
|
| T |
38326169 |
taagccaatgttgaaaatttaatccgtgggtcaagaaccgctcccaatgcaagaacaacactgtactcattccaaaatttgtcaaacttgctcatcatcc |
38326070 |
T |
|
| Q |
320 |
tttcagc |
326 |
Q |
| |
|
||||||| |
|
|
| T |
38326069 |
tttcagc |
38326063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 17 - 322
Target Start/End: Complemental strand, 38314116 - 38313813
Alignment:
| Q |
17 |
tatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccccaga |
116 |
Q |
| |
|
||||||||| |||||||| |||| || |||||||||||| | |||||||||||||||||| ||||||||| | ||| ||||||| ||||||||| ||| |
|
|
| T |
38314116 |
tatataaacgtacatcaactaggtcgagagatgaagactcagagttcttttgcaatggcatggtagaagattggccctaaatagttgtttgcaccctaga |
38314017 |
T |
|
| Q |
117 |
agaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttgagtaa |
216 |
Q |
| |
|
|||| ||||||||||||| |||||| ||||||||||||||||||| ||||||||| ||||||||||| |||||| | || ||| |||||||||||| |
|
|
| T |
38314016 |
agaagtacttttgctagagtacttggcaaatagcatgtacaactttgtctttactttttgcaacttccgttcacaagttgatggatctagttttgagtaa |
38313917 |
T |
|
| Q |
217 |
caatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctcatca |
316 |
Q |
| |
|
||| ||||||| | ||||| |||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| |||||||| ||||| |
|
|
| T |
38313916 |
caagcagccaatcttgaaaatttcatccgtgggtcaagaactgctcccattgcaagaacaacac--tactcatcccaatatttcttaaacttgcccatca |
38313819 |
T |
|
| Q |
317 |
tccttt |
322 |
Q |
| |
|
| |||| |
|
|
| T |
38313818 |
tacttt |
38313813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 322
Target Start/End: Complemental strand, 38306778 - 38306481
Alignment:
| Q |
13 |
aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctgaatagttctttgcaccc |
112 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||| |||||| | |||||||||||||||||| ||||||||| | |||||| |||| |||||| | |
|
|
| T |
38306778 |
aatatatatgaacttacatcaaataggccatgagataaagactcagagttcttttgcaatggcatggtagaagattggccctgaacagttgtttgcatac |
38306679 |
T |
|
| Q |
113 |
cagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatcaagttttga |
212 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||| | || ||| |||||||| |
|
|
| T |
38306678 |
cagaagaagtacttttgctagaatacttgtcaaatagcatgtacaactttgtctttactttttgcaacttccgttcacaagttgatggatcgagttttga |
38306579 |
T |
|
| Q |
213 |
gtaacaatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctcaaacttgctc |
312 |
Q |
| |
|
|||||||| |||||| | || || ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||||| | |
|
|
| T |
38306578 |
gtaacaatcagccaaccttgagaatttcatccgtgggt------------ccattgcaagaacaacactatgctcatcccaatatttcttaaacttgccc |
38306491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 326
Target Start/End: Original strand, 38849805 - 38850127
Alignment:
| Q |
13 |
aatatatataaacttacatcaaataggccgtgagatgaagacttcaatttcttttgcaatggcatgctagaagattcgtcctga---------atagttc |
103 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
38849805 |
aatatataaaaacttacatcaaataggccatgagataaagactttaatttcttttgtaatggcatgctagaagattggtcctgattctccttaatagttc |
38849904 |
T |
|
| Q |
104 |
tttgcaccccagaagaaatacttttgctagaatacttgtcaaatagcatgtacaacttactctttacttcttgcaacttcctttcacaggccgaaacatc |
203 |
Q |
| |
|
|||| ||||||| || | | || |||| ||||| ||| |||||||||||| ||||||| |||||||||| || | |||||||||||||| || |||| |
|
|
| T |
38849905 |
tttgaaccccagcagtagtgctgttgccagaatgcttctcaaatagcatgcacaactttctctttacttgctgtagcttcctttcacaggttgatgcatc |
38850004 |
T |
|
| Q |
204 |
aagttttgagtaacaatgagccaatgtagaaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctca |
303 |
Q |
| |
|
|||||||| ||||||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38850005 |
cagttttgaataacaataagccaaggttgtaaacttcatccgtgggtcaagaaccgctcccaatgcaagaacaacactatactcatcccaatatttctca |
38850104 |
T |
|
| Q |
304 |
aacttgctcatcatcctttcagc |
326 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
38850105 |
aacttgctcatcatcctttcagc |
38850127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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