View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16151_low_16 (Length: 318)

Name: NF16151_low_16
Description: NF16151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16151_low_16
NF16151_low_16
[»] chr5 (20 HSPs)
chr5 (15-160)||(10033954-10034091)
chr5 (15-155)||(16333879-16334011)
chr5 (12-160)||(13818004-13818144)
chr5 (12-160)||(16155024-16155164)
chr5 (15-155)||(39657509-39657641)
chr5 (12-160)||(19985966-19986106)
chr5 (12-160)||(36293621-36293761)
chr5 (12-160)||(33430348-33430488)
chr5 (12-160)||(37254668-37254808)
chr5 (13-160)||(1776377-1776516)
chr5 (12-160)||(12278860-12279000)
chr5 (12-160)||(17332551-17332691)
chr5 (12-160)||(26283318-26283458)
chr5 (12-160)||(39434723-39434863)
chr5 (62-160)||(3155673-3155771)
chr5 (12-160)||(31680394-31680534)
chr5 (61-160)||(31501757-31501856)
chr5 (12-160)||(36291398-36291538)
chr5 (60-160)||(28801314-28801416)
chr5 (77-160)||(43068904-43068987)
[»] chr7 (18 HSPs)
chr7 (15-160)||(3114099-3114236)
chr7 (15-160)||(5555514-5555651)
chr7 (12-160)||(36630843-36630983)
chr7 (14-160)||(14777109-14777247)
chr7 (12-160)||(8394152-8394292)
chr7 (12-160)||(35090195-35090335)
chr7 (12-160)||(40920003-40920143)
chr7 (13-155)||(38638237-38638371)
chr7 (12-160)||(37002144-37002284)
chr7 (12-160)||(34389056-34389196)
chr7 (12-120)||(26624813-26624913)
chr7 (12-160)||(36658208-36658348)
chr7 (14-160)||(8867733-8867871)
chr7 (63-160)||(33685591-33685688)
chr7 (12-128)||(43184468-43184576)
chr7 (60-128)||(10868513-10868583)
chr7 (12-61)||(7002843-7002892)
chr7 (12-61)||(7048714-7048763)
[»] chr4 (35 HSPs)
chr4 (12-160)||(25930735-25930875)
chr4 (15-160)||(29319708-29319845)
chr4 (12-160)||(36382346-36382485)
chr4 (61-160)||(20129337-20129436)
chr4 (14-160)||(50205079-50205217)
chr4 (12-160)||(17511233-17511374)
chr4 (15-160)||(40529042-40529179)
chr4 (12-128)||(6235579-6235687)
chr4 (12-160)||(13012215-13012355)
chr4 (12-160)||(43143584-43143724)
chr4 (12-160)||(48989355-48989495)
chr4 (61-155)||(26439320-26439414)
chr4 (61-155)||(34407325-34407419)
chr4 (61-155)||(43355936-43356030)
chr4 (12-160)||(3292896-3293036)
chr4 (12-160)||(28877250-28877390)
chr4 (61-155)||(42333817-42333911)
chr4 (12-160)||(30216742-30216882)
chr4 (12-160)||(47500800-47500940)
chr4 (12-155)||(44156683-44156818)
chr4 (12-160)||(6690235-6690375)
chr4 (61-155)||(10352925-10353019)
chr4 (12-160)||(29995983-29996123)
chr4 (12-153)||(35545987-35546120)
chr4 (12-152)||(1817752-1817884)
chr4 (61-155)||(30077672-30077766)
chr4 (61-160)||(26448080-26448178)
chr4 (93-160)||(48129993-48130060)
chr4 (93-160)||(30109983-30110050)
chr4 (97-160)||(45194203-45194266)
chr4 (12-46)||(30110108-30110142)
chr4 (12-46)||(48130111-48130145)
chr4 (61-109)||(13392922-13392970)
chr4 (61-109)||(13396061-13396109)
chr4 (12-60)||(30077631-30077679)
[»] chr2 (19 HSPs)
chr2 (12-160)||(41251634-41251774)
chr2 (12-151)||(31581622-31581753)
chr2 (15-160)||(32127144-32127281)
chr2 (15-160)||(42440013-42440150)
chr2 (15-160)||(35962742-35962879)
chr2 (61-150)||(2958142-2958231)
chr2 (12-160)||(17445041-17445179)
chr2 (12-160)||(12756837-12756977)
chr2 (15-155)||(16405632-16405764)
chr2 (15-155)||(18981648-18981780)
chr2 (12-160)||(45418610-45418750)
chr2 (13-160)||(771026-771165)
chr2 (15-160)||(2285889-2286026)
chr2 (12-160)||(6403804-6403944)
chr2 (15-155)||(8059336-8059468)
chr2 (13-160)||(8147378-8147518)
chr2 (12-160)||(44084603-44084743)
chr2 (61-155)||(26162740-26162834)
chr2 (93-152)||(26237991-26238050)
[»] chr3 (18 HSPs)
chr3 (13-160)||(6269427-6269566)
chr3 (12-160)||(6930894-6931034)
chr3 (12-160)||(19390173-19390313)
chr3 (12-160)||(34084122-34084262)
chr3 (12-160)||(11018212-11018352)
chr3 (12-160)||(22968444-22968584)
chr3 (61-155)||(39771822-39771916)
chr3 (12-160)||(45183008-45183148)
chr3 (12-152)||(6503569-6503701)
chr3 (12-160)||(40081741-40081879)
chr3 (12-155)||(33040985-33041120)
chr3 (12-160)||(27935205-27935345)
chr3 (61-155)||(19565542-19565636)
chr3 (12-155)||(45335907-45336041)
chr3 (12-61)||(35514380-35514429)
chr3 (12-60)||(22922214-22922262)
chr3 (93-152)||(5135304-5135363)
chr3 (12-46)||(5135421-5135455)
[»] chr6 (8 HSPs)
chr6 (15-160)||(13837848-13837985)
chr6 (15-160)||(34948761-34948898)
chr6 (12-160)||(28996757-28996897)
chr6 (12-160)||(398644-398784)
chr6 (12-160)||(18339133-18339273)
chr6 (12-155)||(29743315-29743450)
chr6 (101-160)||(31028445-31028504)
chr6 (63-152)||(33229379-33229468)
[»] chr8 (14 HSPs)
chr8 (12-160)||(3648794-3648934)
chr8 (12-160)||(29728386-29728526)
chr8 (12-160)||(16788025-16788165)
chr8 (15-155)||(15838318-15838449)
chr8 (12-160)||(4404035-4404175)
chr8 (61-160)||(34136866-34136965)
chr8 (12-160)||(23402135-23402275)
chr8 (61-160)||(36408578-36408677)
chr8 (12-160)||(39914542-39914681)
chr8 (12-155)||(42230971-42231104)
chr8 (60-160)||(3435296-3435398)
chr8 (61-155)||(9877252-9877346)
chr8 (12-46)||(40470475-40470509)
chr8 (94-160)||(40470567-40470633)
[»] chr1 (13 HSPs)
chr1 (15-160)||(7433472-7433609)
chr1 (12-160)||(42310941-42311081)
chr1 (13-161)||(17445339-17445479)
chr1 (12-160)||(32982056-32982196)
chr1 (12-160)||(26144282-26144422)
chr1 (60-160)||(41972313-41972415)
chr1 (12-160)||(321377-321517)
chr1 (12-160)||(35907579-35907719)
chr1 (12-160)||(3829011-3829150)
chr1 (60-155)||(33489719-33489816)
chr1 (93-148)||(23313278-23313333)
chr1 (12-46)||(33489839-33489873)
chr1 (12-46)||(41972256-41972290)
[»] scaffold0069 (1 HSPs)
scaffold0069 (12-160)||(17869-18009)
[»] scaffold0041 (1 HSPs)
scaffold0041 (12-160)||(52952-53092)
[»] scaffold2142 (1 HSPs)
scaffold2142 (12-160)||(549-689)
[»] scaffold0502 (1 HSPs)
scaffold0502 (12-160)||(5257-5397)
[»] scaffold0002 (1 HSPs)
scaffold0002 (12-160)||(480457-480597)
[»] scaffold0154 (1 HSPs)
scaffold0154 (12-160)||(31507-31647)


Alignment Details
Target: chr5 (Bit Score: 85; Significance: 2e-40; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 10034091 - 10033954
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||        ||||||||||||||||||| |  ||||||||||||||||||||||    
T  10034091 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgc--------gtgtgacaattttcagattgcccaaatttttctttttgtaaatgt 10034000  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  10033999 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatc 10033954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 16333879 - 16334011
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    ||||| ||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  16333879 atgaatccgtcaatagtgtgctaaataaaattccaagaccta--------tttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgt 16333970  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  16333971 gttaatgggcttttgggttgaatctaatgtgcaaaaattat 16334011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 13818144 - 13818004
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    ||||||| |||||||||| ||||||||||||| |||||||||||||||||        ||||||||||||||||||| |  |||||||||||||||||||    
T  13818144 gagatgagcccgtcaatagtgtgctaaataaatttccaagacctatttgc--------gtgtgacaattttcagattgcccaaatttttctttttgtaaa 13818053  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  13818052 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatc 13818004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 16155164 - 16155024
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | ||||||| |||||||||||||||||||||||||||||||        ||||||||||||||||||| | ||||||||||||||| ||||    
T  16155164 gagatgaatctgtcaatagtgtgctaaataaaattccaagacctatttgc--------gtgtgacaattttcagattgcctaaatttttctttttataaa 16155073  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  16155072 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatc 16155024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 39657509 - 39657641
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  39657509 atgaacccgtcaatagtgtgctaaataaaattccaagaccta--------tttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgt 39657600  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    ||||||| ||||||  ||||| |||||||||||||||||||    
T  39657601 gttaatgagcttttgggttgagtctaatgtgcaaaaattat 39657641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 19986106 - 19985966
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||| ||||||| |||| ||||||||||| ||||||||||||||        |||||| |||||| |||||||  |||||||||||||||||||    
T  19986106 gagatgaacctgtcaatagtgtgttaaataaaatttcaagacctatttgc--------gtgtgataatttttagattacccaaatttttctttttgtaaa 19986015  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||| |||||| |||||  ||||||||||||||||||||||||| ||||    
T  19986014 tgtgctaatggacttttgggttgaatctaatgtgcaaaaattatcgatc 19985966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 36293621 - 36293761
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | || |||| ||||||||||||||||||||||||||||| |        ||||||||||||||||||| |  |||||||||||||||||||    
T  36293621 gagatgaaactgtaaatagtgtgctaaataaaattccaagacctatttac--------gtgtgacaattttcagattgcccaaatttttctttttgtaaa 36293712  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||||||||||  ||||| |||||||| |||||||||| ||||    
T  36293713 tgtgttaatgggcttttgggttgagtctaatgtacaaaaattatcgatc 36293761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 33430488 - 33430348
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||        |||||| |||||||||||| |  ||||||||||||||||||     
T  33430488 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgc--------gtgtgagaattttcagattgcccaaatttttctttttgtaag 33430397  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| |||||||  ||||  ||||||| ||||||||||| ||||    
T  33430396 tgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatc 33430348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 37254808 - 37254668
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||        |||||| |||||||||||| |  ||||||||||||||||||     
T  37254808 gagatgaacccgtcaataatgtgctaaataaaattccgagacctatttgc--------gtgtgagaattttcagattgcccaaatttttctttttgtaag 37254717  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| | |||||  ||||  ||||||||||||||||||| ||||    
T  37254716 tgtgttaattgacttttgggttgggtctaatgtgcaaaaattatcgatc 37254668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 1776377 - 1776516
Alignment:
Q  13 agatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaat 112  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||        |||||||||||||||||||| ||| |  ||||||||||||||||||||    
T  1776377 agatgaacctgtcgatagtgtgctaaataaaattccaagaccta--------tttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaat 1776468  T
Q  113 gtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||| |||||  ||||| | |||||| |||||||||| ||||    
T  1776469 gtgttaatggactttttggttgactttaatgtacaaaaattatcgatc 1776516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 12278860 - 12279000
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||| ||||||| |||||||||||||||||| |||||||        ||||||||||| |||||||||||| |  ||||||||||||||||||     
T  12278860 gagatgaacctgtcaatagtgtgctaaataaaattccgagaccta--------tttgcgtgtgagaattttcagattgcccaaatttttctttttgtaag 12278951  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| ||| |||  ||||  ||||||||||||||||||| ||||    
T  12278952 tgtgttaattggcctttgggttgggtctaatgtgcaaaaattatcgatc 12279000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 17332551 - 17332691
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| ||||||||| |||||||||||||||||| |||||||        ||||||||||| |||||||||||| |  ||||||||||||||||||     
T  17332551 gagatgaatccgtcaatagtgtgctaaataaaattccgagaccta--------tttgcgtgtgaaaattttcagattgcccaaatttttctttttgtaag 17332642  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| |||||||  ||||  |||||| |||||||||||| ||||    
T  17332643 tgtgttaattggcttttgggttgggtctaatatgcaaaaattatcgatc 17332691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 26283318 - 26283458
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| |        ||||||||||||||||||| |  |||||||||||||| ||||    
T  26283318 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttac--------gtgtgacaattttcagattgcccaaatttttctttttataaa 26283409  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||  |||||  ||||| ||||||||||||||||||| ||||    
T  26283410 tgtgttaatgaactttttggttgagtctaatgtgcaaaaattatcgatc 26283458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 39434863 - 39434723
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | ||||||| ||||||||||||||||| ||||||||||| | |        ||||||||||||||||| |  ||||||||| |||||||||    
T  39434863 gagatgaaactgtcaatagtgtgctaaataaaattcaaagacctatttacat--------gtgacaattttcagattgcccaaatttttcattttgtaaa 39434772  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||||||||||  ||||| ||||||||| ||||||||| ||||    
T  39434771 tgtgttaatgggcttttgggttgagtctaatgtgaaaaaattatcgatc 39434723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 3155673 - 3155771
Alignment:
Q  62 ctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||||||||||||||||||||    |||||||||||||| ||||||||||||||| |||||| ||||| || |||||||||||||||| ||||    
T  3155673 ctatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatggacttttaggttgagtcgaatgtgcaaaaattattgatc 3155771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 31680534 - 31680394
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |        |||| |||||||||||| |  ||||||||||||||||||     
T  31680534 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcat--------gtgagaattttcagattgcccaaatttttctttttgtaag 31680443  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| |||||||  ||||  ||||||| | ||||||||| ||||    
T  31680442 tgtgttaattggcttttgggttgggtctaatgcggaaaaattatcgatc 31680394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 31501757 - 31501856
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||||| || |||||||||||| |  |||||||||||||||||| ||||||||| |||||||  ||||  ||||||||||||||||||| ||||    
T  31501757 cctatttgcgtgcgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgggtctaatgtgcaaaaattatcgatc 31501856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 36291538 - 36291398
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||| ||||||||||||  |||||||||||         |||| | |||||| ||||| |  |||||||||||||||||||    
T  36291538 gagatgaacccgtcaatagtgtgttaaataaaattctgagacctatttgt--------gtgtaataattttgagattgcccaaatttttctttttgtaaa 36291447  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||  |||||| |||  |||||||||||||||||||| ||||    
T  36291446 tgtgttaatgaacttttaggttagatctaatgtgcaaaaattattgatc 36291398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 28801416 - 28801314
Alignment:
Q  60 gcctatttgcgtgtgacaattttcagattactt--aaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatgg 157  Q
    |||||||||||||||| |||||||| |||  |   |||||||||||||||||| |||||||||||||||||   ||| |||||||||||||||||||| |    
T  28801416 gcctatttgcgtgtgagaattttcatatttttcccaaatttttctttttgtaagtgtgttaatgggcttttggtttggatctaatgtgcaaaaattatcg 28801317  T
Q  158 atc 160  Q
    |||    
T  28801316 atc 28801314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 43068987 - 43068904
Alignment:
Q  77 aattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||||| |  |||||||||||||||||||||||||||||| |||||  ||||  ||||||||| ||||||||| ||||    
T  43068987 aattttcagattgcccaaatttttctttttgtaaatgtgttaatggacttttgggttgggtctaatgtgaaaaaattattgatc 43068904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 3114099 - 3114236
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||         ||||||||||||||||||| |  ||||||||||||||||||||||    
T  3114099 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgt--------gtgtgacaattttcagattgcccaaatttttctttttgtaaatgt 3114190  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  3114191 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatc 3114236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 5555651 - 5555514
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||         ||||||||||||||||||| |  |||||||||||||||||||||     
T  5555651 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgt--------gtgtgacaattttcagattgcccaaatttttctttttgtaaatgc 5555560  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  5555559 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatc 5555514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 36630983 - 36630843
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||        ||||||||||||||||||| |  |||||||||||||||||||    
T  36630983 gagatgaacccgtcaatagtgtgctaactaaaattccaagacctatttgc--------gtgtgacaattttcagattgcccaaatttttctttttgtaaa 36630892  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||| |||||  ||||| | ||||||||||||||||| ||||    
T  36630891 tgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatc 36630843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 14777109 - 14777247
Alignment:
Q  14 gatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatg 113  Q
    |||||| | ||||||| ||||||||||||||||||||||||||||| |        ||||||||||||||||||| |  |||||||||||||||||||||    
T  14777109 gatgaaactgtcaatagtgtgctaaataaaattccaagacctatttac--------gtgtgacaattttcagattgcccaaatttttctttttgtaaatg 14777200  T
Q  114 tgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||| ||||||  ||||| ||||||||||||||||||| ||||    
T  14777201 tgttaatgagcttttgggttgagtctaatgtgcaaaaattatcgatc 14777247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 8394292 - 8394152
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||| |        ||||||||||||||||||| |  ||||||||| |||||||||    
T  8394292 gagataaacccgtcaatagtgtgctaaataaaattccaagacctatttac--------gtgtgacaattttcagattgcccaaatttttccttttgtaaa 8394201  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||| |||||  ||||| | ||||||||||||||||| ||||    
T  8394200 tgtgttaatggactttttggttgagtttaatgtgcaaaaattatcgatc 8394152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 35090335 - 35090195
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| ||||||||| |||||||||||||||||| ||||||||||||        |||||| ||||||||||||||  ||||||||||||||||||     
T  35090335 gagatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgc--------gtgtgagaattttcagattacccaaatttttctttttgtaag 35090244  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| |||||||  ||||  ||||||||||||||||||| ||||    
T  35090243 tgtgttaattggcttttgggttgggtctaatgtgcaaaaattattgatc 35090195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 40920003 - 40920143
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |        |||| ||||||||||||    |||||||||||||||||||    
T  40920003 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcat--------gtgagaattttcagattgtccaaatttttctttttgtaaa 40920094  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| |||||||  ||| ||||||||||||||||||||| ||||    
T  40920095 tgtgttaattggcttttgggttaaatctaatgtgcaaaaattatcgatc 40920143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 13 - 155
Target Start/End: Original strand, 38638237 - 38638371
Alignment:
Q  13 agatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaat 112  Q
    ||||||||||||||||| |||||||||||||||||| |||||||        ||||||||||| |||||||||||| |  |||||||||||||||||| |    
T  38638237 agatgaacccgtcaatagtgtgctaaataaaattccgagaccta--------tttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagt 38638328  T
Q  113 gtgttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    |||||||| | |||||  |||| ||||||||||||||||||||    
T  38638329 gtgttaattgacttttgggttggatctaatgtgcaaaaattat 38638371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 37002144 - 37002284
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||| |||||||||||| |  ||||||||||||||||||     
T  37002144 gagatgaacccgtcaatagtgtgctaaataaaattccaagaccta--------tttgcgtgtgagaattttcagattgcccaaatttttctttttgtaag 37002235  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| | |||||   |||  ||||||||||||||||||| ||||    
T  37002236 tgtgttaattgacttttggattgggtctaatgtgcaaaaattatcgatc 37002284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 34389056 - 34389196
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||| ||| |||||||||||||||||| |||||||        ||||||||||| |||||||||||| |  ||||||||||||||||||     
T  34389056 gagatgaacccgtcgataatgtgctaaataaaattccgagaccta--------tttgcgtgtgagaattttcagattgcccaaatttttctttttgtaag 34389147  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||  ||||||  ||||  ||||||||||||||||||| ||||    
T  34389148 tgtgttaattagcttttgggttgggtctaatgtgcaaaaattatcgatc 34389196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 26624913 - 26624813
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||        |||||||||| |||||||||||| |  ||||||||||||||||||     
T  26624913 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctat--------ttgcgtgtgagaattttcagattgcccaaatttttctttttgtaag 26624822  T
Q  112 tgtgttaat 120  Q
    |||||||||    
T  26624821 tgtgttaat 26624813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 36658348 - 36658208
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||        |||||||||| |||||||||||| |  |||||||| ||||||| |     
T  36658348 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctat--------ttgcgtgtgagaattttcagattgcccaaatttttatttttgttag 36658257  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    | ||||||| |||||||  ||||  || |||||||||||||||| ||||    
T  36658256 tatgttaattggcttttcggttgggtccaatgtgcaaaaattatcgatc 36658208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 8867733 - 8867871
Alignment:
Q  14 gatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatg 113  Q
    |||||| ||||||||| |||||||||||||||||| |||||||        ||||||||||| ||||||| |||| |  |||||||||||||||||||||    
T  8867733 gatgaatccgtcaatagtgtgctaaataaaattccgagaccta--------tttgcgtgtgaaaattttccgattgcccaaatttttctttttgtaaatg 8867824  T
Q  114 tgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    | ||||| |||||||   |||  |||||| |||||||||||| ||||    
T  8867825 tattaattggcttttggattgggtctaatatgcaaaaattatcgatc 8867871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 160
Target Start/End: Complemental strand, 33685688 - 33685591
Alignment:
Q  63 tatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| ||| |||||||||||| |  |||||||||||||||||| |||||||||||||||||  ||||  | ||||||||||||||||| ||||    
T  33685688 tatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgggtttaatgtgcaaaaattatcgatc 33685591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 128
Target Start/End: Original strand, 43184468 - 43184576
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||  |||||||        ||||||||||| |||||||||||| |  ||||||||||||||||||     
T  43184468 gagatgaacccgtcaatagtgtgctaaataaaattcagagaccta--------tttgcgtgtgagaattttcagattgcccaaatttttctttttgtaag 43184559  T
Q  112 tgtgttaatgggctttt 128  Q
    | ||||||| |||||||    
T  43184560 tatgttaattggctttt 43184576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 10868513 - 10868583
Alignment:
Q  60 gcctatttgcgtgtgacaattttcagatta--cttaaatttttctttttgtaaatgtgttaatgggctttt 128  Q
    ||||||||||| |||| ||||||||||||   |  ||||||||||||||||||||||||||||||||||||    
T  10868513 gcctatttgcgcgtgagaattttcagattttgcccaaatttttctttttgtaaatgtgttaatgggctttt 10868583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 7002892 - 7002843
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgc 61  Q
    |||||||||||||||||| ||||||||||||||||||  |||||||||||    
T  7002892 gagatgaacccgtcaatagtgtgctaaataaaattccgtgacctatttgc 7002843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 7048763 - 7048714
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgc 61  Q
    |||||||||||||||||| ||||||||||||||||||  |||||||||||    
T  7048763 gagatgaacccgtcaatagtgtgctaaataaaattccgtgacctatttgc 7048714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 25930875 - 25930735
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||        ||||||||||||||| ||| |  |||||||||||||||||||    
T  25930875 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgc--------gtgtgacaattttcaaattgcccaaatttttctttttgtaaa 25930784  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||||||||||  ||||| | ||||||||||||||||| ||||    
T  25930783 tgtgttaatgggcttttgggttgagtttaatgtgcaaaaattatagatc 25930735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 29319708 - 29319845
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||         ||||||||||||||||||| || ||||||||||||||||||||||    
T  29319708 atgaacccgtcaatagtgtgctaaataaaattccaagacttatttgt--------gtgtgacaattttcagattgctcaaatttttctttttgtaaatgt 29319799  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| ||||  ||||| ||||||||||||||||||| ||||    
T  29319800 gttaatgggattttgggttgagtctaatgtgcaaaaattatcgatc 29319845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 36382346 - 36382485
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||||||    ||||||||||||| |||||    
T  36382346 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgc--------gtgtgacaattttcagattgtccaaatttttctttt-gtaaa 36382436  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||| |||||  ||||| | ||||||||||||||||||||||    
T  36382437 tgtgttaatggactttttggttgagtttaatgtgcaaaaattatggatc 36382485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 20129436 - 20129337
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||| |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  20129436 cctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatc 20129337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 160
Target Start/End: Original strand, 50205079 - 50205217
Alignment:
Q  14 gatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatg 113  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||        |||||| ||||||||||||    || ||||||||||||||| ||    
T  50205079 gatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgc--------gtgtgagaattttcagattgtccaattttttctttttgtaagtg 50205170  T
Q  114 tgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||| |||||||  |||| |||||||||||||||||||| ||||    
T  50205171 tgttaattggcttttgggttggatctaatgtgcaaaaattatcgatc 50205217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 17511233 - 17511374
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaatt-ccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaa 110  Q
    ||||||||||  |||||| |||||||||||||||| ||||||||||        ||||||||| |||||||||| ||| |  ||||||||||||||||||    
T  17511233 gagatgaaccgatcaataatgtgctaaataaaatttccaagaccta--------tttgcgtgtaacaattttcaaattgcccaaatttttctttttgtaa 17511324  T
Q  111 atgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  17511325 atgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatc 17511374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 40529179 - 40529042
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| |        ||||||||||||| |||    ||||||||||||||||||||||    
T  40529179 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcat--------gtgacaattttcaaattgtccaaatttttctttttgtaaatgt 40529088  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||| | ||||| ||||| | ||||||||||||||||| ||||    
T  40529087 gttaatgagtttttaggttgagtttaatgtgcaaaaattatcgatc 40529042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 128
Target Start/End: Complemental strand, 6235687 - 6235579
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||        ||||||||||||||| ||| |  |||||||||||||||||||    
T  6235687 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgc--------gtgtgacaattttcaaattgcccaaatttttctttttgtaaa 6235596  T
Q  112 tgtgttaatgggctttt 128  Q
    ||||||||||| |||||    
T  6235595 tgtgttaatggactttt 6235579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 13012355 - 13012215
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| |        ||||||||||||||| ||| |  |||||||||||||| ||||    
T  13012355 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttac--------gtgtgacaattttcaaattgcccaaatttttctttttataaa 13012264  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||| ||||||  ||||||||||||||||||||||||| ||||    
T  13012263 tgtgttaatgagctttttggttgaatctaatgtgcaaaaattatcgatc 13012215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 43143584 - 43143724
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    ||||||||||| |||||  |||||||||||||||||| |||||||        ||||||||||| |||||||||||| |  ||||||||||||||||||     
T  43143584 gagatgaacccatcaattgtgtgctaaataaaattccgagaccta--------tttgcgtgtgagaattttcagattgcccaaatttttctttttgtaag 43143675  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| |||||||  ||||| ||||||||||||||||||| ||||    
T  43143676 tgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatc 43143724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 48989495 - 48989355
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |||        || |||||||||||| |  ||||||||||||||||||     
T  48989495 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtat--------gagaattttcagattgcccaaatttttctttttgtaag 48989404  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||| ||||| |||||  | ||||||||||||||||| ||||    
T  48989403 tgtgttaatggacttttgagttgggtttaatgtgcaaaaattatcgatc 48989355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 26439320 - 26439414
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    ||||||| |||||||||||||||||||| |  |||||||||||||| |||||||||||||||||||||  ||||| |||||||||||||||||||    
T  26439320 cctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattat 26439414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 34407325 - 34407419
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    ||||||| |||||||||||||||||||| |  |||||||||||||| |||||||||||||||||||||  ||||| |||||||||||||||||||    
T  34407325 cctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattat 34407419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 43356030 - 43355936
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    ||||||| |||||||||||||||||||| |  |||||||||||||| |||||||||||||||||||||  ||||| |||||||||||||||||||    
T  43356030 cctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattat 43355936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 3292896 - 3293036
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    ||||||||| |||||||| |||||||||||||||||| |||||||        ||||||||||| |||||||||||| |  ||||||||||||||||||     
T  3292896 gagatgaactcgtcaatagtgtgctaaataaaattccgagaccta--------tttgcgtgtgagaattttcagattgcccaaatttttctttttgtaag 3292987  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| |||||||  ||||  ||||||| ||||||||||| ||||    
T  3292988 tgtgttaattggcttttgggttgggtctaatgggcaaaaattatcgatc 3293036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 28877250 - 28877390
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    ||||||||||| |||||| |||||||||||||||||| |||||||        ||||||||||| |||||| ||||| |  |||||||||||||| |||     
T  28877250 gagatgaacccatcaatagtgtgctaaataaaattccgagaccta--------tttgcgtgtgagaatttttagatttcccaaatttttctttttataag 28877341  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
     ||||||||  ||||||| ||||||||||||||||||||||||| ||||    
T  28877342 cgtgttaattagcttttaggttgaatctaatgtgcaaaaattatcgatc 28877390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 42333817 - 42333911
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    ||||||||||||||| |||||||||||| |  |||||||||||||||||| ||||||||| |||||||  ||||| |||||||||||||||||||    
T  42333817 cctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtctaatgtgcaaaaattat 42333911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 30216742 - 30216882
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||| ||| |||||||| |        |||| |||||||||||| |  ||||||||||||||||||     
T  30216742 gagatgaacccgtcaatagtgtgctaaataaaattccgagatctatttgcat--------gtgagaattttcagattgcccaaatttttctttttgtaag 30216833  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||  ||||||  ||||  ||||||||||||||||||| ||||    
T  30216834 tgtgttaattagcttttgggttgggtctaatgtgcaaaaattatcgatc 30216882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 47500940 - 47500800
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| |        ||||||||||||||| ||| |  |||||||||||||  ||||    
T  47500940 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttac--------gtgtgacaattttcaaattgcccaaatttttcttttcataaa 47500849  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||| ||||||  ||||| ||||||||||||||||||| ||||    
T  47500848 tgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatc 47500800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 44156818 - 44156683
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||        ||| || ||||||||||||    ||| ||||||||||||||     
T  44156818 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgc--------gtgagagaattttcagattgtccaaaattttctttttgtaag 44156727  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    ||||||||| |||||||  ||||  |||||||||||||||||||    
T  44156726 tgtgttaattggcttttgggttgggtctaatgtgcaaaaattat 44156683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 6690235 - 6690375
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||| ||||||||||||| |||||||||||||||| | |||||||        ||||||||||| ||||||||| || |  ||||||||||||||||||     
T  6690235 gagacgaacccgtcaatagtgtgctaaataaaatttcgagaccta--------tttgcgtgtgagaattttcagtttgcccaaatttttctttttgtaag 6690326  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| |||||||  ||||  ||||||| ||||||||||| ||||    
T  6690327 tgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatc 6690375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 10352925 - 10353019
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    ||||||||||||| | |||||||||||| |  ||||||||| |||||||||||||||||||| |||||  ||||  |||||||||||||||||||    
T  10352925 cctatttgcgtgtaagaattttcagattgcccaaatttttccttttgtaaatgtgttaatggactttttggttgggtctaatgtgcaaaaattat 10353019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 29995983 - 29996123
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| ||||||||| |||||| ||||||||||| ||| ||||        |||||||  | |||||||||||| |  ||||||||||||| |||||    
T  29995983 gagatgaatccgtcaatagtgtgcttaataaaattccgagaactat--------ttgcgtgcaagaattttcagattgcccaaatttttcttttcgtaaa 29996074  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||| |||||  ||||| |||||||| |||||||||| ||||    
T  29996075 tgtgttaatggactttttggttgagtctaatgtacaaaaattatcgatc 29996123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 153
Target Start/End: Complemental strand, 35546120 - 35545987
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    ||||||||||| |||||| |||||||||||||||||  ||||| ||||||        |||||| |||||||||||| |  ||| ||||||||||||||     
T  35546120 gagatgaacccatcaatagtgtgctaaataaaattcagagacccatttgc--------gtgtgagaattttcagattgcccaaaattttctttttgtaag 35546029  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaatt 153  Q
    ||||||||| |||||||  ||||  ||| ||| |||||||||    
T  35546028 tgtgttaattggcttttgggttgggtctgatgcgcaaaaatt 35545987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 1817884 - 1817752
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| ||| ||||| |||| ||||||||||||| ||||||||        |||||||| | |||||| ||||| |  |||||||||||||| ||||    
T  1817884 gagatgaatccgacaatagtgtgttaaataaaattccgagacctat--------ttgcgtgtaagaatttttagattgcccaaatttttctttttataaa 1817793  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaat 152  Q
    ||| ||||||| |||||   ||| |||||||||||||||||    
T  1817792 tgtattaatggacttttggattggatctaatgtgcaaaaat 1817752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 30077672 - 30077766
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    |||||||| |||| | ||||||||||||    |||||||||||||||||||||||||||||  |||||  ||||  |||||||||||||| ||||    
T  30077672 cctatttgtgtgtaaaaattttcagattgtccaaatttttctttttgtaaatgtgttaatgaactttttggttgggtctaatgtgcaaaatttat 30077766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 26448178 - 26448080
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||| || ||| |||||||||||| |  |||||||| ||||||||| ||||||||||| |||||  |||  || ||||||||||||||||| ||||    
T  26448178 cctatttgtgtatgagaattttcagattgcccaaattttt-tttttgtaagtgtgttaatggacttttgggttagatttaatgtgcaaaaattatcgatc 26448080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 48130060 - 48129993
Alignment:
Q  93 aaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||||||||||| |||||||||| ||||||  ||||  |||||| |||||||||||| ||||    
T  48130060 aaatttttctttttgtaagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcgatc 48129993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 160
Target Start/End: Complemental strand, 30110050 - 30109983
Alignment:
Q  93 aaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||||||||||| ||||||||||| ||||    |||  ||||||||||||||||||| ||||    
T  30110050 aaatttttctttttgtaagtgtgttaatggtctttgggtttgggtctaatgtgcaaaaattatcgatc 30109983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 45194266 - 45194203
Alignment:
Q  97 ttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||| ||||||||| ||||||||||| |||||  ||||| | ||||||||||||||||| ||||    
T  45194266 ttttttttttgtaagtgtgttaatggacttttgggttgagtttaatgtgcaaaaattattgatc 45194203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 30110142 - 30110108
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaatt 46  Q
    |||||||||||||||||| ||||||||||||||||    
T  30110142 gagatgaacccgtcaatagtgtgctaaataaaatt 30110108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 48130145 - 48130111
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaatt 46  Q
    |||||||||||||||||| ||||||||||||||||    
T  48130145 gagatgaacccgtcaatagtgtgctaaataaaatt 48130111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 13392922 - 13392970
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgta 109  Q
    ||||||||||||||| |||||| ||||| |  |||||||||||||||||    
T  13392922 cctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta 13392970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 13396061 - 13396109
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgta 109  Q
    ||||||||||||||| |||||| ||||| |  |||||||||||||||||    
T  13396061 cctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta 13396109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 30077631 - 30077679
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttg 60  Q
    |||||||| ||| || || |||||||||||||||| |||||||||||||    
T  30077631 gagatgaatccggcactagtgtgctaaataaaatttcaagacctatttg 30077679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 41251634 - 41251774
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | ||||||| ||||||||||||||||||||||||||||| |        ||||||||||||||||||| |  |||||||||||||||||||    
T  41251634 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttac--------gtgtgacaattttcagattgcccaaatttttctttttgtaaa 41251725  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  41251726 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatc 41251774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 12 - 151
Target Start/End: Original strand, 31581622 - 31581753
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| ||||||||||||||||||||||||||        |||||||||||||||||||||||| |  |||||||||||||||||||    
T  31581622 gagatgaacccgtcaatagtgtgctaaataaaattccaagaccta--------tttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaa 31581713  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaa 151  Q
    |||||||||||||||||  | ||| |||||| ||||||||    
T  31581714 tgtgttaatgggcttttgggatgagtctaatatgcaaaaa 31581753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 32127144 - 32127281
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    ||||||||||||||| |||||||||||||||||||||| ||||        ||||||||||||||||||||||| | |||||||||||||||||||||||    
T  32127144 atgaacccgtcaatagtgtgctaaataaaattccaagatctat--------ttgcgtgtgacaattttcagattgcctaaatttttctttttgtaaatgt 32127235  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||| ||||||  || || | ||||||||||||||||| ||||    
T  32127236 gttaatgagcttttgggtcgagtttaatgtgcaaaaattattgatc 32127281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 42440150 - 42440013
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||||||        ||||||||||||||||||| |  ||||||||||||||||||||||    
T  42440150 atgaatccgtcaatagtgtgctaaataaaattgcaagacctatttgc--------gtgtgacaattttcagattgcccaaatttttctttttgtaaatgt 42440059  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||||||  ||| | ||||||||||||||||||| ||||    
T  42440058 gttaatgggcttttgggtttagtctaatgtgcaaaaattatcgatc 42440013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 35962879 - 35962742
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||         ||||||||||||||||||| |  ||| ||||||||||||||||||    
T  35962879 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgt--------gtgtgacaattttcagattgcccaaaattttctttttgtaaatgt 35962788  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||  ||||||  ||||| ||||||||||||||||||| ||||    
T  35962787 gttaataagcttttgggttgagtctaatgtgcaaaaattatcgatc 35962742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 2958142 - 2958231
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaa 150  Q
    ||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||||  ||||| ||||||||||||||    
T  2958142 cctatttgcgtgtgacaattttcagattacccaaatttttctctttgtaaatgtgttaatgggcttttgggttgagtctaatgtgcaaaa 2958231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 17445041 - 17445179
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | ||||||| ||||||||||||||||||||||||||||| |        ||||||||||||||||||| |  |||||||||||||||||||    
T  17445041 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttac--------gtgtgacaattttcagattgcccaaatttttctttttgtaaa 17445132  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||||||||||  ||||| ||||  ||||||||||||| ||||    
T  17445133 tgtgttaatgggcttttgggttgagtcta--gtgcaaaaattatcgatc 17445179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 12756837 - 12756977
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||| |||| ||||        ||||||||| |||||||||||| || ||||||||||||||||||     
T  12756837 gagatgaacccgtcaatagtgtgctaaataaaattccgagacttatt--------tgcgtgtgagaattttcagattgctcaaatttttctttttgtaag 12756928  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| |||||||  ||||  ||||||| ||||||||||| ||||    
T  12756929 tgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatc 12756977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 16405764 - 16405632
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||        |||||||||||||||||||    |||||||||||||| |||||||    
T  16405764 atgaacccgtcaatagtgtgctaaataaaattccaagacttatttgc--------gtgtgacaattttcagattgtccaaatttttctttttataaatgt 16405673  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    ||||||| ||||||  ||||| ||||| |||||||||||||    
T  16405672 gttaatgagcttttgggttgagtctaacgtgcaaaaattat 16405632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 18981780 - 18981648
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||        ||||||||||||| | ||| |  ||||||||||||||||||||||    
T  18981780 atgaacccgtcaacagtgtgctaaataaaattccaagacctatttgc--------gtgtgacaatttttaaattgcccaaatttttctttttgtaaatgt 18981689  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
     ||||||| |||||  ||||| |||||||||||||||||||    
T  18981688 tttaatggacttttgggttgagtctaatgtgcaaaaattat 18981648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 45418750 - 45418610
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||  ||||||||||||        |||||| |||||||||||| |  ||||||||||||||||||     
T  45418750 gagatgaacccgtcaatagtgtgctaaataaaattcagagacctatttgc--------gtgtgagaattttcagattgcccaaatttttctttttgtaag 45418659  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| |||||||  |||| |||||||| ||||||||||| ||||    
T  45418658 tgtgttaattggcttttgggttggatctaatgcgcaaaaattatcgatc 45418610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 771165 - 771026
Alignment:
Q  13 agatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaat 112  Q
    ||||||||||||||||| ||||||||||||| |||| ||||||||||||        |||||| |||||||||||| |  |||||||||||||||||| |    
T  771165 agatgaacccgtcaataatgtgctaaataaagttccgagacctatttgc--------gtgtgagaattttcagattgcccaaatttttctttttgtaagt 771074  T
Q  113 gtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||||||||  ||||  |||||||||||||| |||| ||||    
T  771073 gtgttaatgggctttttggttgggtctaatgtgcaaaagttatcgatc 771026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 2286026 - 2285889
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    |||||| |||||||| |||||||||||||||||||| ||||||||||        ||||||||||||||||||| || ||||||||| ||| ||||||||    
T  2286026 atgaacacgtcaatagtgtgctaaataaaattccaaaacctatttgc--------gtgtgacaattttcagattgctcaaatttttcctttcgtaaatgt 2285935  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||| | |||||  |||| || ||||||||||||||||| ||||    
T  2285934 gttaatagactttttggttggatttaatgtgcaaaaattatcgatc 2285889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 6403804 - 6403944
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| |        ||||||||||||||||||| |  |||||||||||||| ||||    
T  6403804 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttac--------gtgtgacaattttcagattgcccaaatttttctttttataaa 6403895  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||  |||||  ||||| ||||||||||||||||||| ||||    
T  6403896 tgtgttaatgaactttttggttgagtctaatgtgcaaaaattatcgatc 6403944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 155
Target Start/End: Original strand, 8059336 - 8059468
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    ||||||||||||||  |||||||||||||||||| ||||| |||||         |||||| |||||||| |||    |||||||||||||||||| |||    
T  8059336 atgaacccgtcaattgtgtgctaaataaaattccgagaccgatttgt--------gtgtgagaattttcaaattggccaaatttttctttttgtaagtgt 8059427  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    |||||| |||||||  ||||| |||||||||||||||||||    
T  8059428 gttaattggcttttgggttgactctaatgtgcaaaaattat 8059468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 160
Target Start/End: Complemental strand, 8147518 - 8147378
Alignment:
Q  13 agatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaatttt-cagattacttaaatttttctttttgtaaa 111  Q
    ||||||||||||||||| |||| ||||||||||||| ||| ||||||||        |||||| |||||| |||||| |  ||||||||||||||||||     
T  8147518 agatgaacccgtcaatagtgtgttaaataaaattccgagatctatttgc--------gtgtgagaatttttcagattgcccaaatttttctttttgtaag 8147427  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| | ||||| |||||  ||||||||||||| ||||| ||||    
T  8147426 tgtgttaattgacttttgagttgggtctaatgtgcaaagattatcgatc 8147378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 44084603 - 44084743
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||  |||||||        ||||||| ||| |||||||||||| |  ||||||||||||||||||     
T  44084603 gagatgaacccgtcaatagtgtgctaaataaaattctgagaccta--------tttgcgtatgagaattttcagattgcccaaatttttctttttgtaag 44084694  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||  |||||   |||  | ||||||||||||||||| ||||    
T  44084695 tgtgttaatgaacttttggattgggtttaatgtgcaaaaattatcgatc 44084743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 26162740 - 26162834
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    |||||||| || ||| |||||| ||||| |  |||||||||||||||||| |||||||||||| ||||  ||||||| ||||||| |||||||||    
T  26162740 cctatttgtgtttgagaatttttagattgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgaatttaatgtgtaaaaattat 26162834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 26238050 - 26237991
Alignment:
Q  93 aaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaat 152  Q
    |||||||||||||||||| ||||||||||| |||||   ||| ||||||| |||||||||    
T  26238050 aaatttttctttttgtaagtgtgttaatggacttttggtttgcatctaatttgcaaaaat 26237991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 6269427 - 6269566
Alignment:
Q  13 agatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaat 112  Q
    ||||||| | ||||||| ||||||||||||||||||||||||||||| |        ||||||||||||||||||| |  ||||||||||||||||||||    
T  6269427 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttac--------gtgtgacaattttcagattgcccaaatttttctttttgtaaat 6269518  T
Q  113 gtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  6269519 gtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatc 6269566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 6930894 - 6931034
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    ||||||||| |||||||| |||||||||||||||||| |||||||        ||||||||||| |||||||||||| | ||||||||||||||||||||    
T  6930894 gagatgaactcgtcaatagtgtgctaaataaaattccgagaccta--------tttgcgtgtgagaattttcagattgcctaaatttttctttttgtaaa 6930985  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| |||||||  |||| |||||||| ||||||||||| ||||    
T  6930986 tgtgttaattggcttttgggttggatctaatgcgcaaaaattatcgatc 6931034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 19390313 - 19390173
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | ||||||| ||||||||||||||||||||||||||||| |        ||||||||||||||||||| |  |||||||||||||||||||    
T  19390313 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttac--------gtgtgacaattttcagattgcccaaatttttctttttgtaaa 19390222  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| | |||||| ||||| ||||||||||||||||||| ||||    
T  19390221 tgtgttaatagacttttaggttgagtctaatgtgcaaaaattatcgatc 19390173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 34084122 - 34084262
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||        ||||||||||| |||||||| ||| |  |||||||||||||||||||    
T  34084122 gagatgaacccatcaatagtgtgctaaataaaattccaagaccta--------tttgcgtgtgataattttcatattgcccaaatttttctttttgtaaa 34084213  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||| |||||  ||||||| ||||||||||||||||| ||||    
T  34084214 tgtgttaatggactttttggttgaatttaatgtgcaaaaattatcgatc 34084262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 11018212 - 11018352
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||  |||||||||||||||||  |||||||        ||||||||||| |||||||||||| |  ||||||||||||||||||     
T  11018212 gagatgaacccgtcaattgtgtgctaaataaaattctgagaccta--------tttgcgtgtgagaattttcagattgcccaaatttttctttttgtaag 11018303  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| |||||||  ||||| ||||||||||||||||||| ||||    
T  11018304 tgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatc 11018352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 22968444 - 22968584
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | ||||||| |||||||||||||||| |||||||||||| |        ||||||||||||| ||||| |  |||||||||||||||||||    
T  22968444 gagatgaaactgtcaatagtgtgctaaataaaatttcaagacctatttac--------gtgtgacaatttttagattgcccaaatttttctttttgtaaa 22968535  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||||||||||  ||| | ||||||||||||||||||| ||||    
T  22968536 tgtgttaatgggcttttgggttaagtctaatgtgcaaaaattatcgatc 22968584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 39771916 - 39771822
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    ||||||| |||||||||||||||||||| |  |||||||||||||| |||||||||||||||||||||  ||||| |||||||||||||||||||    
T  39771916 cctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaatgggcttttgggttgagtctaatgtgcaaaaattat 39771822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 45183148 - 45183008
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||         |||||| |||||||||||| |  ||||||||||||||||||     
T  45183148 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgt--------gtgtgagaattttcagattgcccaaatttttctttttgtaag 45183057  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| |||||||  ||||  ||||||| ||||||||||| ||||    
T  45183056 tgtgttaattggcttttgggttgggtctaatgcgcaaaaattatcgatc 45183008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 6503569 - 6503701
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    ||||||||||| |||||  |||||||||||||| ||| ||||||||||||||        |||| |||||||||||| |||||||||||||||||||||     
T  6503569 gagatgaacccatcaattgtgtgctaaataaaaatccgagacctatttgcct--------gtgagaattttcagattgcttaaatttttctttttgtaag 6503660  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaat 152  Q
    |||| |||| |||||||  ||||| |||||| |||||||||    
T  6503661 tgtgctaattggcttttgggttgagtctaatttgcaaaaat 6503701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 40081741 - 40081879
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| ||||||||| ||||| |||||| ||||        ||||||||||||||||||| ||| |  |||||||||||||||||||    
T  40081741 gagatgaacccgtcaatagtgtgctaaaaaaaat-ccaagatctat--------ttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaa 40081831  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||| ||||||  ||||| |||||||| |||||||||| ||||    
T  40081832 tgtgttaatgagctttt-ggttgagtctaatgttcaaaaattatcgatc 40081879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 33041120 - 33040985
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||        |||||| |||||||| |||  | ||||||||||||||||||     
T  33041120 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgc--------gtgtgaaaattttcaaattgttcaaatttttctttttgtaag 33041029  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    |||||||||  ||||||  ||||  |||||| ||||||||||||    
T  33041028 tgtgttaattagcttttgggttgggtctaatatgcaaaaattat 33040985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 27935345 - 27935205
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| | |||||||||||||||| |||||||||| | |||        || |||||||||||| |  ||||||||||||||||||     
T  27935345 gagatgaacccgtcaatagtatgctaaataaaattccgagacctattttcgtat--------gagaattttcagattgcccaaatttttctttttgtaag 27935254  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||| ||||||  ||||  | ||||||||||||||||| ||||    
T  27935253 tgtgttaatgagcttttgggttgggtttaatgtgcaaaaattatcgatc 27935205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 19565542 - 19565636
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    ||||||||||||| | ||||||||||||    ||||||||||||||||||||||||||||||  ||||  ||||  |||||||||||||||||||    
T  19565542 cctatttgcgtgtaagaattttcagattgtccaaatttttctttttgtaaatgtgttaatggattttttggttgggtctaatgtgcaaaaattat 19565636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 45336041 - 45335907
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| ||| || || |||||||||||||||||||||||||||||||        |||| | |||||||||||| |  | |||||||||||||||||    
T  45336041 gagatgaatccggcactagtgtgctaaataaaattccaagacctatttgc--------gtgtaagaattttcagattgcccagatttttctttttgtaaa 45335950  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    ||||||||| | |||||  ||||  ||||||||| |||||||||    
T  45335949 tgtgttaat-gactttttggttgggtctaatgtgtaaaaattat 45335907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Complemental strand, 35514429 - 35514380
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgc 61  Q
    |||||||||||||||||| ||||| |||||||||||| ||||||||||||    
T  35514429 gagatgaacccgtcaatagtgtgcaaaataaaattcctagacctatttgc 35514380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 22922262 - 22922214
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttg 60  Q
    |||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  22922262 gagatgaacccgtcaatagtgtgttaaataaaattccaagatctatttg 22922214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 5135363 - 5135304
Alignment:
Q  93 aaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaat 152  Q
    |||||||||||||||||| |||||||||| ||||||| ||||  |||||||| |||||||    
T  5135363 aaatttttctttttgtaagtgtgttaatgagcttttaggttgggtctaatgtacaaaaat 5135304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 5135455 - 5135421
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaatt 46  Q
    |||||||||||||||||| ||||||||||||||||    
T  5135455 gagatgaacccgtcaatagtgtgctaaataaaatt 5135421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 13837985 - 13837848
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||        ||||||||||||||||||| |  ||||||||||||||||||||||    
T  13837985 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgc--------gtgtgacaattttcagattgcccaaatttttctttttgtaaatgt 13837894  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||| ||| ||||||  ||||| |||||||| |||||||||| ||||    
T  13837893 gttgatgtgcttttgggttgagtctaatgtacaaaaattatcgatc 13837848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 15 - 160
Target Start/End: Original strand, 34948761 - 34948898
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    ||||||||||||||| |||||||||||||||| ||||| |||||||         ||||||||||||||||||| |  ||||||||||||||||||||||    
T  34948761 atgaacccgtcaatagtgtgctaaataaaatttcaagatctatttgt--------gtgtgacaattttcagattgcccaaatttttctttttgtaaatgt 34948852  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  34948853 gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatc 34948898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 28996897 - 28996757
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||||||        |||||| |||||||||||| |  ||||||||||||||||||     
T  28996897 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgc--------gtgtgagaattttcagattgcccaaatttttctttttgtaag 28996806  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| | |||||| ||||  ||||||| ||||||||||| ||||    
T  28996805 tgtgttaattgacttttaggttgggtctaatgcgcaaaaattatcgatc 28996757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 398784 - 398644
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| |        ||||||||||||||| ||| |  |||||||||||||| ||||    
T  398784 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttac--------gtgtgacaattttcaaattgcccaaatttttctttttataaa 398693  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||| ||||||  ||||| ||||||||||||||||||| ||||    
T  398692 tgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatc 398644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 18339273 - 18339133
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |        |||| |||||||||||| |  ||| ||||||||||||||     
T  18339273 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcat--------gtgagaattttcagattgcccaaaattttctttttgtaag 18339182  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| ||||||||  |||  ||||||||||||||||||| ||||    
T  18339181 tgtgttaattggcttttagattgggtctaatgtgcaaaaattattgatc 18339133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 29743450 - 29743315
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| ||| || || |||||||||||||||||| ||||||||        |||||||| | |||||||||||| |  |||||||||||| ||||||    
T  29743450 gagatgaatccggcactagtgtgctaaataaaattccgagacctat--------ttgcgtgtaagaattttcagattgcccaaatttttctttctgtaaa 29743359  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    ||||||||||  |||||  ||||  |||||||||||||||||||    
T  29743358 tgtgttaatgaactttttggttgggtctaatgtgcaaaaattat 29743315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 31028445 - 31028504
Alignment:
Q  101 ctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||||    
T  31028445 ctttttgtaaatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgatc 31028504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 152
Target Start/End: Original strand, 33229379 - 33229468
Alignment:
Q  63 tatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaat 152  Q
    ||||| ||||| | |||||||||||| |  ||||||||||||||| |||||||||||||| |||||  ||||  |||||||| |||||||    
T  33229379 tatttacgtgtaagaattttcagattgcccaaatttttctttttggaaatgtgttaatggacttttgggttgggtctaatgtacaaaaat 33229468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 9e-33; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 3648794 - 3648934
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||||| ||||| ||||        ||||||||||||||||||| |  ||| |||||||||||||||    
T  3648794 gagatgaacccgtcaatagtgtgctaaataaaattccaaaacctacttgc--------gtgtgacaattttcagattgcccaaaattttctttttgtaaa 3648885  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||||||||||  ||||| ||||||||| ||||||||| ||||    
T  3648886 tgtgttaatgggcttttgggttgagtctaatgtgaaaaaattatcgatc 3648934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 29728386 - 29728526
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||        ||||||||| |||||||||||||| |  |||||||||||||||||||    
T  29728386 gagatgaacccgtcaatagtgtgctaaataaaattcgaagaccta--------tttgcgtgtcacaattttcagattgcccaaatttttctttttgtaaa 29728477  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||| ||||||  ||||| |||||||||||||| |||| ||||    
T  29728478 tgtgttaatgagcttttgggttgagtctaatgtgcaaaatttatcgatc 29728526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 16788025 - 16788165
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| ||||||||||||||||||||||||||        ||||||||||| | |||| ||||| |  ||||||||||||||||||     
T  16788025 gagatgaacccgtcaatagtgtgctaaataaaattccaagaccta--------tttgcgtgtgagagttttaagattgcccaaatttttctttttgtaag 16788116  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| |||||||  ||||| ||||||||||||||||||| ||||    
T  16788117 tgtgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatc 16788165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 155
Target Start/End: Complemental strand, 15838449 - 15838318
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||        |||||| |||||||||||| |  ||||||||||||| ||||||||    
T  15838449 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgc--------gtgtgaaaattttcagattgcccaaatttttctttt-gtaaatgt 15838359  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    |||||||| |||||  ||||| | |||||||||||||||||    
T  15838358 gttaatggactttttggttgagtttaatgtgcaaaaattat 15838318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 4404175 - 4404035
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    ||||||||||| |||||  |||||||||||||||||| ||||||||||||        |||||| |||||| ||||| |  ||||||||||||||||||     
T  4404175 gagatgaacccatcaattgtgtgctaaataaaattccgagacctatttgc--------gtgtgagaatttttagattgcccaaatttttctttttgtaag 4404084  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    | ||||||| |||||||  ||||| ||||||||||||||||||| ||||    
T  4404083 tatgttaattggcttttgggttgagtctaatgtgcaaaaattatcgatc 4404035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 34136866 - 34136965
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||||||| |||||||||||| |  |||||||||||||||||| ||||||||| | |||||  ||||| ||||||||||||||||||| ||||    
T  34136866 cctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttgagtctaatgtgcaaaaattatcgatc 34136965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 23402275 - 23402135
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||| ||||||| |||| ||||||||||| | ||||||||        |||||||||| |||||||||||| |  ||||||||||||||||||     
T  23402275 gagatgaaccagtcaatagtgtgttaaataaaatttcgagacctat--------ttgcgtgtgagaattttcagattgcccaaatttttctttttgtaag 23402184  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| |||||||  ||||  |||||| |||||| ||||| ||||    
T  23402183 tgtgttaattggcttttgggttgggtctaatatgcaaagattatcgatc 23402135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 61 - 160
Target Start/End: Complemental strand, 36408677 - 36408578
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||| |||||| | |||||||| ||| |  ||| |||||||||||||||||||||||||| |||||  |||| |||||||||||||||||||| ||||    
T  36408677 cctattagcgtgtaagaattttcaaattgccaaaaattttctttttgtaaatgtgttaatggacttttgggttggatctaatgtgcaaaaattatcgatc 36408578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 39914681 - 39914542
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| | |        ||||||||||||| ||| |  |||||||| ||||| ||||    
T  39914681 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttactt--------gtgacaattttcaaattgcccaaattttt-tttttataaa 39914591  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||| ||||||  ||||| ||||||||||||||||||| ||||    
T  39914590 tgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatc 39914542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 42231104 - 42230971
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| ||||||||| |||||||||||||||||  |||||||||||| |||        || |||||||| ||| |  ||||||||||||||||||     
T  42231104 gagatgaatccgtcaatagtgtgctaaataaaattctgagacctatttgcatat--------gagaattttcaaattgcccaaatttttctttttgtaa- 42231014  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
     |||||||||| ||||| ||||| || |||||||||||||||||    
T  42231013 -gtgttaatggacttttgagttggatttaatgtgcaaaaattat 42230971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 3435398 - 3435296
Alignment:
Q  60 gcctatttgcgtgtgacaattttcagatta--cttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatgg 157  Q
    |||||||||||| ||| ||||||||||||   |  |||||||||||||||||| |||||||||||| ||||  ||||  ||||||||||||||||||| |    
T  3435398 gcctatttgcgtttgagaattttcagattttgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgggtctaatgtgcaaaaattatcg 3435299  T
Q  158 atc 160  Q
    |||    
T  3435298 atc 3435296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 9877346 - 9877252
Alignment:
Q  61 cctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    ||||||||| ||||| |||||||||||| |  |||||||||||||||||| ||||||||| | |||||  |||   |||||||||||||||||||    
T  9877346 cctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggttaggtctaatgtgcaaaaattat 9877252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 40470475 - 40470509
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaatt 46  Q
    |||||||||||||||||| ||||||||||||||||    
T  40470475 gagatgaacccgtcaatagtgtgctaaataaaatt 40470509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 40470567 - 40470633
Alignment:
Q  94 aatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||| ||||| ||| ||||||||||| ||||| | |||  ||||||||||||||||||| ||||    
T  40470567 aatttttttttttataagtgtgttaatggacttttgatttgggtctaatgtgcaaaaattatcgatc 40470633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 6e-31; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 7433609 - 7433472
Alignment:
Q  15 atgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaatgt 114  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||         ||||||||||||| ||||| |  ||| ||||||||||||||||||    
T  7433609 atgaacccgtcaatagtgtgctaaataaaatttcaagacctatttgt--------gtgtgacaatttttagattgcccaaaattttctttttgtaaatgt 7433518  T
Q  115 gttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  7433517 gttaatgggcttttgggttgagtctaatgtgcaaaaattatagatc 7433472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 42310941 - 42311081
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    ||||||||||||||||||  || |||||||||||| |||||| ||||        |||||||||||||||||||||| |  |||||||||||||||||||    
T  42310941 gagatgaacccgtcaatagcgtactaaataaaatttcaagacttatt--------tgcgtgtgacaattttcagattgcccaaatttttctttttgtaaa 42311032  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||| ||||||||  ||||| ||||||||||||||||||| ||||    
T  42311033 tgtgttaacgggcttttgggttgagtctaatgtgcaaaaattatcgatc 42311081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 17445479 - 17445339
Alignment:
Q  13 agatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaat 112  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||||        |||||| |||||||||||| |  |||||||||||||||||| |    
T  17445479 agatgaacccgtcaataatgtgctaaataaaattccgagacctatttgc--------gtgtgagaattttcagattgcccaaatttttctttttgtaagt 17445388  T
Q  113 gtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatcc 161  Q
    |||||||| | |||||  |||| ||||||||| |||||||||| |||||    
T  17445387 gtgttaattgacttttgggttggatctaatgtacaaaaattattgatcc 17445339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 32982056 - 32982196
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | |||||||  |||||||||||||||||||||||||||||         |||||||||||||||||||    |||||||||||||||||||    
T  32982056 gagatgaatctgtcaatagagtgctaaataaaattccaagacctatttgt--------gtgtgacaattttcagattgtccaaatttttctttttgtaaa 32982147  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    | |||||||||||||||| ||||  ||||||||||||||||||| ||||    
T  32982148 tatgttaatgggcttttaggttgggtctaatgtgcaaaaattatcgatc 32982196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 26144422 - 26144282
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| |        ||||||||||||||| ||| |  |||||||||||||| ||||    
T  26144422 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttac--------gtgtgacaattttcaaattgcccaaatttttctttttataaa 26144331  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||| ||||||  ||||| ||||||||||||||||||| ||||    
T  26144330 tgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatc 26144282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 41972313 - 41972415
Alignment:
Q  60 gcctatttgcgtgtgacaattttcagattactt--aaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatgg 157  Q
    |||||||||||||||| ||||||||||||  ||  |||||||||||||||||| ||||||||| |||||||| |||| |||||||||||||||||||| |    
T  41972313 gcctatttgcgtgtgagaattttcagattttttccaaatttttctttttgtaagtgtgttaataggcttttaggttggatctaatgtgcaaaaattatcg 41972412  T
Q  158 atc 160  Q
    |||    
T  41972413 atc 41972415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 321377 - 321517
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||| ||||||||||||| |||||||||||| |||        || |||||||||||| |  ||||||||||||||||||     
T  321377 gagatgaacccgtcaataatgtgttaaataaaattccgagacctatttgcatat--------gagaattttcagattgcccaaatttttctttttgtaac 321468  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||| |||||  |||| ||||||||  |||||||||| ||||    
T  321469 tgtgttaatggacttttgggttggatctaatgcacaaaaattatcgatc 321517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 35907719 - 35907579
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    ||||||||| |||||||| |||||||||||||||||| ||||||||||||        |||||| ||||||||||||||  ||| ||||||||||||||     
T  35907719 gagatgaactcgtcaataatgtgctaaataaaattccgagacctatttgc--------gtgtgagaattttcagattacccaaaattttctttttgtaag 35907628  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||  |||| |||||||  ||||  ||||||||||||||||||| ||||    
T  35907627 tgtactaattggcttttgggttgggtctaatgtgcaaaaattatcgatc 35907579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 3829150 - 3829011
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||| |||        || |||||||||||| |  ||||||||||||||||||     
T  3829150 gagatgaacccgtcaatagtgtgctaaataaaattcca-gacctatttgcgtat--------gaaaattttcagattgcccaaatttttctttttgtaag 3829060  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||||  |||||  ||||  | ||||||||||||||||| ||||    
T  3829059 tgtgttaatgaacttttgggttgggtttaatgtgcaaaaattatcgatc 3829011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 155
Target Start/End: Complemental strand, 33489816 - 33489719
Alignment:
Q  60 gcctatttgcgtgtgacaattttcagatta--cttaaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaaaaattat 155  Q
    |||||||||||||||| ||||||||||||   || ||||||||||||| |||| ||||||||||||||||||  |||| |||||||| ||||||||||    
T  33489816 gcctatttgcgtgtgagaattttcagattttgctcaaatttttcttttagtaagtgtgttaatgggcttttagtttgagtctaatgtacaaaaattat 33489719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 148
Target Start/End: Complemental strand, 23313333 - 23313278
Alignment:
Q  93 aaatttttctttttgtaaatgtgttaatgggcttttaagttgaatctaatgtgcaa 148  Q
    |||||||||||||||||||||||||||||  |||||| ||||| ||||||||||||    
T  23313333 aaatttttctttttgtaaatgtgttaatgaacttttatgttgagtctaatgtgcaa 23313278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 46
Target Start/End: Complemental strand, 33489873 - 33489839
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaatt 46  Q
    |||||||||||||||||| ||||||||||||||||    
T  33489873 gagatgaacccgtcaatagtgtgctaaataaaatt 33489839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 46
Target Start/End: Original strand, 41972256 - 41972290
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaatt 46  Q
    |||||||||||||||||| ||||||||||||||||    
T  41972256 gagatgaacccgtcaatagtgtgctaaataaaatt 41972290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 18009 - 17869
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | ||||||| |||||||||||||||| |||||||||||| | |        ||||||||||||||||| |  |||||||||||||||||||    
T  18009 gagatgaaactgtcaatagtgtgctaaataaaatttcaagacctatttacat--------gtgacaattttcagattgcccaaatttttctttttgtaaa 17918  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||||||||||  ||||| ||||||||||||||||||| ||||    
T  17917 tgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatc 17869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 53092 - 52952
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |        |||| ||||||||||||    |||||||||||||||||||    
T  53092 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcat--------gtgagaattttcagattgtccaaatttttctttttgtaaa 53001  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| |||||||  ||| ||||||||||||||||||||| ||||    
T  53000 tgtgttaattggcttttgggttaaatctaatgtgcaaaaattatcgatc 52952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 689 - 549
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| |        ||||||||||||||| ||| |  |||||||||||||| ||||    
T  689 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttac--------gtgtgacaattttcaaattgcccaaatttttctttttataaa 598  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||| ||||||  ||||| ||||||||||||||||||| ||||    
T  597 tgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatc 549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 5397 - 5257
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |        |||| |||||||||||| |  ||| ||||||||||||||     
T  5397 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcat--------gtgagaattttcagattgcccaaaattttctttttgtaag 5306  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    ||||||||| ||||||||  |||  ||||||||||||||||||| ||||    
T  5305 tgtgttaattggcttttagattgggtctaatgtgcaaaaattattgatc 5257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 480457 - 480597
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| |        ||||||||||||||| ||| |  |||||||||||||| ||||    
T  480457 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttac--------gtgtgacaattttcaaattgcccaaatttttctttttataaa 480548  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||| ||||||  ||||| ||||||||||||||||||| ||||    
T  480549 tgtgttaatgagctttttggttgagtctaatgtgcaaaaattatcgatc 480597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 31647 - 31507
Alignment:
Q  12 gagatgaacccgtcaatactgtgctaaataaaattccaagacctatttgcctatttgcgtgtgacaattttcagattacttaaatttttctttttgtaaa 111  Q
    |||||||||| ||||||| ||||| |||||||||| | ||||||||        ||||| |||| ||||||||||||    ||||||||||||||||||     
T  31647 gagatgaacctgtcaatagtgtgcaaaataaaattactagacctat--------ttgcgagtgagaattttcagattgtccaaatttttctttttgtaag 31556  T
Q  112 tgtgttaatgggcttttaagttgaatctaatgtgcaaaaattatggatc 160  Q
    |||||||||||||||||  ||||  |||| |||||||||||||| ||||    
T  31555 tgtgttaatgggcttttgggttgggtctagtgtgcaaaaattatcgatc 31507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University