View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16151_low_17 (Length: 315)

Name: NF16151_low_17
Description: NF16151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16151_low_17
NF16151_low_17
[»] chr4 (2 HSPs)
chr4 (11-315)||(32243155-32243459)
chr4 (11-302)||(32248236-32248527)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 315
Target Start/End: Original strand, 32243155 - 32243459
Alignment:
Q  11 cagagaccaattttcttcttgggagcaaccaatataacttcttgaagcatgatctggaatcagttgataggaacaagactccttttgtagttgtccaagg 110  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||    
T  32243155 cagagaccaattttcttcttgggagcaaccagtataacttcttgaagcatgatttggaatcagttgacaggaacaagactccttttgtagtagtccaagg 32243254  T
Q  111 gcaccgacctatgtacacaacaattaatggaaccaaggatgttctgttaagagaacagatgttggagcacttggaacctctgttggtgaataacaatgtg 210  Q
    |||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  32243255 gcaccgacctatgtacaccacaatcaacggaaccaaggatgttctgttaagagaacagatgttggagcacttggaacctctattggtgaataacaatgtg 32243354  T
Q  211 tcccttgccctttggggccatgttcacagatacgagagattttgtccactgaataactacacttgtggaaatggtgtgggccagagagcaggagacagag 310  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  32243355 tcccttgccctttggggccatgttcatagatacgagagattttgtccactgaataactacacttgtggaaatggtgtgggccagagagcaagagacaaag 32243454  T
Q  311 gatat 315  Q
    |||||    
T  32243455 gatat 32243459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 302
Target Start/End: Original strand, 32248236 - 32248527
Alignment:
Q  11 cagagaccaattttcttcttgggagcaaccaatataacttcttgaagcatgatctggaatcagttgataggaacaagactccttttgtagttgtccaagg 110  Q
    ||||||||||||| |||| ||||||||| || ||||||||||| |||| |||| ||||||||||||| ||||||||||||||||||||||| ||||||||    
T  32248236 cagagaccaatttccttcctgggagcaatcagtataacttcttaaagcgtgatttggaatcagttgacaggaacaagactccttttgtagtagtccaagg 32248335  T
Q  111 gcaccgacctatgtacacaacaattaatggaaccaaggatgttctgttaagagaacagatgttggagcacttggaacctctgttggtgaataacaatgtg 210  Q
    ||||||||| |||||||||||||  |||| |   | ||||| |  |||||||| | ||||| | |||||| |||||||||| |||||||||||| ||||     
T  32248336 gcaccgacccatgtacacaacaagcaatgaatttagggatgctgcgttaagaggaaagatggttgagcacctggaacctctattggtgaataaccatgta 32248435  T
Q  211 tcccttgccctttggggccatgttcacagatacgagagattttgtccactgaataactacacttgtggaaatggtgtgggccagagagcagg 302  Q
     |||||||||||||||| |||||||| || |||||||||||||||||||| || ||||  |||||||||||||||||||| | |||||||||    
T  32248436 acccttgccctttggggtcatgttcataggtacgagagattttgtccactaaacaactttacttgtggaaatggtgtgggtcggagagcagg 32248527  T

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