View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16151_low_2 (Length: 953)
Name: NF16151_low_2
Description: NF16151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16151_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 559; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 14 - 604
Target Start/End: Complemental strand, 37183372 - 37182782
Alignment:
| Q |
14 |
cagagaggttgagagaaatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37183372 |
cagagaggttgagagaaatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggta |
37183273 |
T |
|
| Q |
114 |
tgctaaatctaaagtcaaacgctttctgaaatgctcagtggtagatggtttgttttaggattgcttgctgcatttataacttttttcatttaagactatg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37183272 |
tgctaaatctaaagtcaaacgctttctgaaatgctcagtggtagatggtttgttttaggattgcttgttgcatttataacttttttcatttaagactatg |
37183173 |
T |
|
| Q |
214 |
ttgtctcccaagtcatgcatgacttaaccaatcactcattgaatttggttacacatattatgcacggtgatttgaatttccatatgaatgtggctgagtg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37183172 |
ttgtctcccaagtcatgcatgacttaaccaattactcattgaatttggttacacgtattatgcacggtgatttgaatttccatatgaatgtggctgagtg |
37183073 |
T |
|
| Q |
314 |
atgtttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagtcccacgcttcctcttataaggtataagg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37183072 |
atgtttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgtttttggagtcccacgcttcctcttataaggtataagg |
37182973 |
T |
|
| Q |
414 |
gaagattgaatttctgctgaacatagtaaaaacgccccaggtgagcattgagtcaggttcttgaagtagttgtgttgttatgctttgttgctcttgaagt |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37182972 |
gaagattgaatttctgctgaacatagtaaaaacaccccaggtgagcattgagtcaggttcttgaagtagttgtgttgttatgctttgttgctcttgaagt |
37182873 |
T |
|
| Q |
514 |
agttgtgcttttaatcactatctggttggttgaacatctgttagaaaatttgtaggaaattgattattctcttcctactatacatgctata |
604 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37182872 |
agttgtgcttttaatcaccatctggttggttgaacatctgttagaaaatttgtaggaaattgattattctcttcctactatagatgctata |
37182782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 14 - 604
Target Start/End: Complemental strand, 37194504 - 37193914
Alignment:
| Q |
14 |
cagagaggttgagagaaatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggta |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37194504 |
cagagaggttgagagaaatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggta |
37194405 |
T |
|
| Q |
114 |
tgctaaatctaaagtcaaacgctttctgaaatgctcagtggtagatggtttgttttaggattgcttgctgcatttataacttttttcatttaagactatg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37194404 |
tgctaaatctaaagtcaaacgctttctgaaatgctcagtggtagatggtttgttttaggattgcttgttgcatttataacttttttcatttaagactatg |
37194305 |
T |
|
| Q |
214 |
ttgtctcccaagtcatgcatgacttaaccaatcactcattgaatttggttacacatattatgcacggtgatttgaatttccatatgaatgtggctgagtg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37194304 |
ttgtctcccaagtcatgcatgacttaaccaattactcattgaatttggttacacgtattatgcacggtgatttgaatttccatatgaatgtggctgagtg |
37194205 |
T |
|
| Q |
314 |
atgtttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagtcccacgcttcctcttataaggtataagg |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37194204 |
atgtttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgtttttggagtcccacgcttcctcttataaggtataagg |
37194105 |
T |
|
| Q |
414 |
gaagattgaatttctgctgaacatagtaaaaacgccccaggtgagcattgagtcaggttcttgaagtagttgtgttgttatgctttgttgctcttgaagt |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37194104 |
gaagattgaatttctgctgaacatagtaaaaacaccccaggtgagcattgagtcaggttcttgaagtagttgtgttgttatgctttgttgctcttgaagt |
37194005 |
T |
|
| Q |
514 |
agttgtgcttttaatcactatctggttggttgaacatctgttagaaaatttgtaggaaattgattattctcttcctactatacatgctata |
604 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37194004 |
agttgtgcttttaatcaccatctggttggttgaacatctgttagaaaatttgtaggaaattgattattctcttcctactatagatgctata |
37193914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 625 - 938
Target Start/End: Complemental strand, 37182712 - 37182398
Alignment:
| Q |
625 |
aactcaaagtatagcatgatttattaattagtgtcatctatatgtttttggtccataaccataccactatatctagataccctggagagaactaatggca |
724 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37182712 |
aactcaaagtatagcatgatttattaattagtgtcatctatatgtttttggtccataaccataccactatatctagataccctggagagaactaatggca |
37182613 |
T |
|
| Q |
725 |
ttagacagtaatcttagtgagagaagagcatgatattggtttaccaccaagagaataaatccatcaacaatgtctggccctaaagcttgaatttgagtgc |
824 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37182612 |
ttagacagtaatcttagtgagagaagagcatgatattggtttaccaccaggagaataaatccatcaacaatgtctggccctaaagcttgaatttgagtgc |
37182513 |
T |
|
| Q |
825 |
gata-ttttctttagttttcacagataggtttgtcacattttgcaagtccatccattaattgtgctttaggaaatattcacaggaaaattaagatacctt |
923 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37182512 |
gatagttttctttagttttcacagataggtttgtcacattttgcaagtccatccattaattgtgctttaggaaatattcacaggaaaattaagatacctt |
37182413 |
T |
|
| Q |
924 |
tttcatgtataaatt |
938 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37182412 |
tttcatgtataaatt |
37182398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 625 - 938
Target Start/End: Complemental strand, 37193844 - 37193530
Alignment:
| Q |
625 |
aactcaaagtatagcatgatttattaattagtgtcatctatatgtttttggtccataaccataccactatatctagataccctggagagaactaatggca |
724 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37193844 |
aactcaaagtatagcatgatttattaattagtgtcatctatatgtttttggtccataaccataccactatatctagataccctggagagaactaatggca |
37193745 |
T |
|
| Q |
725 |
ttagacagtaatcttagtgagagaagagcatgatattggtttaccaccaagagaataaatccatcaacaatgtctggccctaaagcttgaatttgagtgc |
824 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37193744 |
ttagacagtaatcttagtgagagaagagcatgatattggtttaccaccaggagaataaatccatcaacaatgtctggccctaaagcttgaatttgagtgc |
37193645 |
T |
|
| Q |
825 |
gata-ttttctttagttttcacagataggtttgtcacattttgcaagtccatccattaattgtgctttaggaaatattcacaggaaaattaagatacctt |
923 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37193644 |
gatagttttctttagttttcacagataggtttgtcacattttgcaagtccatccattaattgtgctttaggaaatattcacaggaaaattaagatacctt |
37193545 |
T |
|
| Q |
924 |
tttcatgtataaatt |
938 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
37193544 |
tttcatgtataaatt |
37193530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 30 - 171
Target Start/End: Complemental strand, 37202427 - 37202286
Alignment:
| Q |
30 |
aatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaagtc |
129 |
Q |
| |
|
|||||||| | |||| |||||||||||| |||||||||| | ||||||||| |||||| || | ||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
37202427 |
aatatgtgctgaagaaactgcttgcaaagagagattggctagagcgaaggatgagtctaccgcgatatctataacagttgggtatgccaaatctaaagtt |
37202328 |
T |
|
| Q |
130 |
aaacgctttctgaaatgctcagtggtagatggtttgttttag |
171 |
Q |
| |
|
|| |||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
37202327 |
aagtgctttctgaaatgctcagtggttgatggtttgatttag |
37202286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 37180293 - 37180156
Alignment:
| Q |
27 |
agaaatatgtgataaagagactgcttgcaaacagagattggccatagcgaaggaagagtctgccacaatatctacaacagttgggtatgctaaatctaaa |
126 |
Q |
| |
|
||||||||||| ||||||||||||||||||| | |||||| || ||| ||| | |||||| || |||||||| ||||||| ||||| | ||||||| |
|
|
| T |
37180293 |
agaaatatgtgttaaagagactgcttgcaaagaaagattgaccgcagcaaagaatgagtctacctcaatatctcaaacagttcggtattgcacatctaaa |
37180194 |
T |
|
| Q |
127 |
gtcaaacgctttctgaaatgctcagtggtagatggttt |
164 |
Q |
| |
|
|||| |||||||||||| |||||||| | |||||||| |
|
|
| T |
37180193 |
gtcagtcgctttctgaaacgctcagtgatggatggttt |
37180156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 692 - 755
Target Start/End: Complemental strand, 37201650 - 37201587
Alignment:
| Q |
692 |
tatatctagataccctggagagaactaatggcattagacagtaatcttagtgagagaagagcat |
755 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||| |||| |||| |||||||||| |
|
|
| T |
37201650 |
tatatctacataccctggagagaactaatggcattacacagttttctttgtgatagaagagcat |
37201587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 468 - 503
Target Start/End: Complemental strand, 37211338 - 37211303
Alignment:
| Q |
468 |
aggttcttgaagtagttgtgttgttatgctttgttg |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
37211338 |
aggttcttgaagtagttgtgttgttatgctttgttg |
37211303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 319 - 502
Target Start/End: Complemental strand, 37217086 - 37216909
Alignment:
| Q |
319 |
taaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagt---cccacgcttcctcttataaggtataaggga |
415 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| || |||||||||| || |||||||| | |||| ||||| ||||| || | |||| | ||||| |
|
|
| T |
37217086 |
taaaaatgtctgcatgagatgagtggtatattttttaaaaacaaatttaccatcatgttattggagtactcccactcttccactaa--aggtgtgaggga |
37216989 |
T |
|
| Q |
416 |
agattgaatttctgctgaacatagtaaaaacgccccaggtgagcattgagtcaggttcttgaagtagttgtgttgttatgctttgtt |
502 |
Q |
| |
|
| ||| ||||||||| ||| | ||||||||| | |||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
37216988 |
aaattaaatttctgcagaataaagtaaaaacacta---gtgagcattgag----gttcttgaagtagttgtgtttttatgctttgtt |
37216909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 318 - 377
Target Start/End: Complemental strand, 37202053 - 37201993
Alignment:
| Q |
318 |
ttaaaaatgcttgcatgagataagtggtatattta-tttaaaacaaattaacaatcatgtt |
377 |
Q |
| |
|
||||||||| ||||||||||| |||| |||||||| ||||||| |||||||| |||||||| |
|
|
| T |
37202053 |
ttaaaaatgtttgcatgagatgagtgctatatttattttaaaataaattaaccatcatgtt |
37201993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 271 - 305
Target Start/End: Complemental strand, 37211495 - 37211461
Alignment:
| Q |
271 |
ttatgcacggtgatttgaatttccatatgaatgtg |
305 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37211495 |
ttatgcatggtgatttgaatttccatatgaatgtg |
37211461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 318 - 495
Target Start/End: Complemental strand, 7527198 - 7527026
Alignment:
| Q |
318 |
ttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagtcccacgcttcctcttataaggtataagggaag |
417 |
Q |
| |
|
|||| |||| ||||||||| | |||||||||||||||||||||||||||| || ||||| || |||| ||| ||||||| | |||||| | ||||| |
|
|
| T |
7527198 |
ttaataatgtttgcatgaggtgtgtggtatatttatttaaaacaaattaaccatgatgttataggagtatcactcttcctcctctaaggtgtgtgggaaa |
7527099 |
T |
|
| Q |
418 |
attgaatttctgctgaacatagtaaaaacgccccaggtgagcattgagtcaggttcttgaagtagttgtgttgttatg |
495 |
Q |
| |
|
||| ||||||||| ||||| ||||||||| | | | |||||||||| ||||||||||||||||| |||| ||||| |
|
|
| T |
7527098 |
attaaatttctgcagaacaaagtaaaaacactcta-gtgagcattg----aggttcttgaagtagttatgttcttatg |
7527026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 398
Target Start/End: Original strand, 414835 - 414914
Alignment:
| Q |
318 |
ttaaaaatgcttgcatgagataagtggtatatttatttaaaacaaattaacaatcatgttttatgagtcccacgcttcctc |
398 |
Q |
| |
|
||||||||| ||||||||||| | |||||||||||||| |||||||||||| || |||| || ||||||||| ||||||| |
|
|
| T |
414835 |
ttaaaaatgtttgcatgagatgattggtatatttattt-aaacaaattaaccattgtgttataggagtcccactcttcctc |
414914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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