View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16151_low_20 (Length: 282)
Name: NF16151_low_20
Description: NF16151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16151_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 5329150 - 5328886
Alignment:
| Q |
1 |
agaaacaaaagaaacaacaaacggtagttggttgagtagagcatggcagagtctgctgtgttgtggttattgagcaaagnnnnnnngacaacatttggtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5329150 |
agaaacaaaagaaacaacaaacggtagttggttgagtagagcatggcagagtctgctgtgttgtggttattgagcaaagaaaaaaagacaacatttggtt |
5329051 |
T |
|
| Q |
101 |
ttgtctaaaaataaaaatggtgacaactttttgaggaagggaatttacgtgtaactcattgagcaaggtaagaatagcttgtggcatggttttgtgggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5329050 |
ttgtctaaaaataaaaatggtgacaactttttgaggaagggaatttacgtgtaactcattgagcaaggtaagaatagcttgtggcatggttttgtgggaa |
5328951 |
T |
|
| Q |
201 |
ttaatgnnnnnnngttaatgtcaaggaaggacaaatggttatgttaagagatggaagtaacgaat |
265 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5328950 |
ttaatgtttttttgttaatgtcaaggaaggacaaatggttatgttaagagatggaagtaacgaat |
5328886 |
T |
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