View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16151_low_3 (Length: 943)
Name: NF16151_low_3
Description: NF16151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16151_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 465; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 12 - 497
Target Start/End: Original strand, 38120570 - 38121055
Alignment:
| Q |
12 |
gagatgaagcaaagggaatgtagaagatgatgcaacgatggtgtggtgaagtgatgaagcagaataactatgttaattaataccaaagttgtgctaatga |
111 |
Q |
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| T |
38120570 |
gagatgaagcaaagggaatgtagaagatgatgcaacgatggtgtggtgaagtgatgaagcagaataactatgttaattaataccaaagttgtgctaatga |
38120669 |
T |
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| Q |
112 |
tactcatgactatgcaatgcaactattattnnnnnnnctaaacgttttgtaaccactgcaagaaaagtaaacatttgaagaggcaaatgtgatattatta |
211 |
Q |
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| T |
38120670 |
tactcatgactatgcaatgcaactattattaagaaaactaaacgttttgtaaccactgcaagaaaagtaaacatttgaagaggcaaatgtgatattatta |
38120769 |
T |
|
| Q |
212 |
ttgtgtcttatttatactaaaggagttggtttcggttcagcttcaacttctttgttaagttaccgttttgcaattgaaggttagccaccaatcatattca |
311 |
Q |
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| T |
38120770 |
ttgtgtcttatttatactaaaggagttggtttcggttcagcttcaacttctttgttaagttaccgttttgcaattgaaggttagccaccaatcatattca |
38120869 |
T |
|
| Q |
312 |
tcatgatatcacacttactataaatagaatcatgctatctttctctttaaccaaacactttaccctcttcattatctttggttacttcacactgtttttc |
411 |
Q |
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| T |
38120870 |
tcatgatatcacacttactataaatagaatcatgctatctttctctttaaccaaacactttaccctcttcattatctttggttacttcacactgtttttc |
38120969 |
T |
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| Q |
412 |
ttttcagtaagaacaaagcacaagtttggttagttcaaactctatttctcttcgtcttcctagctctttttccttaattttatttt |
497 |
Q |
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| T |
38120970 |
ttttcagtaagaacaaagcacaagtttggttagttcaaactctatttctcttcgtcttcctagctctttttccttaattttatttt |
38121055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 668 - 879
Target Start/End: Original strand, 38121272 - 38121484
Alignment:
| Q |
668 |
gtcctaaactgagttttatttcacaatgtgaaccttatttgctttaatttgtgctttaattactctttacgtctcccataagctctgatttagccctatg |
767 |
Q |
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| T |
38121272 |
gtcctaaactgagttttatttcacaatgtgaaccttatttgctttaatttgtgctttaattactctttacgtctcccataagctctgatttagccctatg |
38121371 |
T |
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| Q |
768 |
ttttcgaaaatattctcggatgttttcgtttgtgtgatgaatcttgtgttatgttgaatgg-ttttttagcgttattctttgactttaggattttcacat |
866 |
Q |
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| T |
38121372 |
ttttcgaaaatattctcgtatgttttcgtttgtgtgatgaatcttgtgttatgttgaatggtttttttagcgttattctttgactttaggattttcacat |
38121471 |
T |
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| Q |
867 |
cactgcttcatgc |
879 |
Q |
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| T |
38121472 |
cactgcttcatgc |
38121484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 489 - 577
Target Start/End: Original strand, 38121094 - 38121182
Alignment:
| Q |
489 |
ttttattttgtaatgtggtaactggtaatgttcatgtagtttttatcttaactttgcatgtttttattttgtaatgtggtaaacacaag |
577 |
Q |
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| T |
38121094 |
ttttattttgtaatgtggtaactggtaatgttcatgtagtttttatcttaactttgcatgtttttattttgtaatgtggtaaacacaag |
38121182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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