View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16151_low_4 (Length: 683)
Name: NF16151_low_4
Description: NF16151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16151_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 607; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 607; E-Value: 0
Query Start/End: Original strand, 15 - 665
Target Start/End: Original strand, 41895878 - 41896528
Alignment:
| Q |
15 |
aatacacacacctatgcaaattgcaacctgaaatgaaagaaacgtaaannnnnnnnnnnnaatgacaaatataagagaaacatatattatattctgattt |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
41895878 |
aatacacacacctatgcaaattgcaacctgaaatgaaagaaacgtaaatttttattttttaatgacaaatataagagaaacatatattatattctgattt |
41895977 |
T |
|
| Q |
115 |
tagattgttacattttttaaagaaaaattgctaatgtgaattgatcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatc |
214 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41895978 |
tagattgttacattttttaaagaaaaattgctaacgtgaattgatcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatc |
41896077 |
T |
|
| Q |
215 |
aaccacattatactaggaagctgaaataattcacaagaaaataattcatcttttgattttataattaattcatttaaaaatttgacaatttgacataagc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896078 |
aaccacattatactaggaagctgaaataattcacaagaaaataattcatcttttgattttataattaattcatttaaaaatttgacaatttgacataagc |
41896177 |
T |
|
| Q |
315 |
atagagaaattgagaggacaagagtgccttacaaaatatgatgtgggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaac |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896178 |
atagagaaattgagaggacaagagtgccttacaaaatatgacgtgggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaac |
41896277 |
T |
|
| Q |
415 |
tcaccccaaataataatgtaaaagctgaaacatatcaacaaattgtagcaacatcaagattttcatgaagaaattaaataatacttctataacttactct |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41896278 |
tcaccccaaataataatgtaaaagctgaaacatatcaacaaattgtagcaacatcaagattttcatgaagaaattaaataatacttctataacttactct |
41896377 |
T |
|
| Q |
515 |
actactgaaaatttgctatgtaatattaatgataacatagattagttttgactcaagttttgccatcttacctacataggcggatcgagctacaagtcta |
614 |
Q |
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| T |
41896378 |
actactgaaaatttgctatgtaatattaatgataacatagattagttttgactcaagttttgccatcttacctacataggcggatcgagctacaagtcta |
41896477 |
T |
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| Q |
615 |
agcgctacactaggagggaagttcaatcgtcgaaccatcgtcccctcaatc |
665 |
Q |
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| T |
41896478 |
agcgctacactaggagggaagttcaatcgtcgaaccatcgtcccctcaatc |
41896528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 159 - 456
Target Start/End: Original strand, 41890420 - 41890707
Alignment:
| Q |
159 |
tcattacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacattatactaggaagctgaaataattcacaagaaaataa |
258 |
Q |
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|||||||||||||||||||||| ||||| |||||| || |||| ||||||||||||| ||||||||| |||||||||||||| |||| ||||| ||||| |
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| T |
41890420 |
tcattacccaattgatgaaccagttgatgctgaatttctttggtttcttgattatcatccacattatgctaggaagctgaaacaattaacaagccaataa |
41890519 |
T |
|
| Q |
259 |
ttcatcttttgattttataattaattcatttaaaaatttgacaatttgacataagcatagagaaattgagaggacaagagtgccttacaaaatatgatgt |
358 |
Q |
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|| | |||| ||| | ||| ||||||||| ||| |||||||||||||||||| ||||||| ||||||||| |||||||||||||||| || |
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| T |
41890520 |
ttgactttttagtttcagaatcaattcattttaaa--ttgacaatttgacataagaatagaga--------ggacaagagagccttacaaaatatgaagt |
41890609 |
T |
|
| Q |
359 |
gggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaactcaccccaaataataatgtaaaagctgaaacatatcaacaaa |
456 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||| |||||||| |||||| | || ||||| |||||||||||||||||||| | |||||||| |
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| T |
41890610 |
gggagcaaaaccaaatccaccaaagaatccaagaagatcaccaaagaatggaaaagtgactccaaagaataatgtaaaagctgaaacgtttcaacaaa |
41890707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 555 - 665
Target Start/End: Original strand, 41890752 - 41890862
Alignment:
| Q |
555 |
attagttttgactcaagttttgccatcttacctacataggcggatcgagctacaagtctaagcgctacactaggagggaagttcaatcgtcgaaccatcg |
654 |
Q |
| |
|
|||||||| | ||| ||||||| ||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||| ||| | |||| |
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| T |
41890752 |
attagtttcgcctcgagttttgacatcttacctacataagcagatcgagctacaagtctaagcgctacaccgggagggaagttcaatcttcgcatcatca |
41890851 |
T |
|
| Q |
655 |
tcccctcaatc |
665 |
Q |
| |
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||| ||||||| |
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| T |
41890852 |
tcctctcaatc |
41890862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 337 - 455
Target Start/End: Complemental strand, 22551979 - 22551861
Alignment:
| Q |
337 |
agtgccttacaaaatatgatgtgggagcaaaaccaaatccaccaaagaacccaagaagatctccaaagaaaggaaaactcaccccaaataataatgtaaa |
436 |
Q |
| |
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|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || | ||||||| || | |||||| |
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| T |
22551979 |
agtggcttacaaaatatgaagtgggagcaaaaccaaatccaccaaagaagccaagaagatcgccaaagaaagggaatgtaaccccaataaaaagtgtaaa |
22551880 |
T |
|
| Q |
437 |
agctgaaacatatcaacaa |
455 |
Q |
| |
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||||| |||| || ||||| |
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| T |
22551879 |
agctgcaacaaattaacaa |
22551861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 162 - 245
Target Start/End: Complemental strand, 22552153 - 22552070
Alignment:
| Q |
162 |
ttacccaattgatgaaccaattgatactgaatctccttggcttcttgattatcaaccacattatactaggaagctgaaataatt |
245 |
Q |
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|||||||||| |||||||| ||||| || |||||| |||| ||||||||||| | |||||||||||||||||||||||| |||| |
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| T |
22552153 |
ttacccaatttatgaaccagttgatgctaaatctctttggtttcttgattattagccacattatactaggaagctgaaacaatt |
22552070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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