View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16151_low_8 (Length: 500)
Name: NF16151_low_8
Description: NF16151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16151_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 8 - 486
Target Start/End: Original strand, 30896572 - 30897041
Alignment:
| Q |
8 |
gaaacaattatttgagtgtaatctatccatgtcatataattctttgagtgtaaaattgaagaatgctgcaattcaccagcaatttcttcaattttctcgt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30896572 |
gaaacaattatttgagtgtaatctatccatgtcatataattctttgagtgtaaaattgaagaatgctgcaattcaccagcaatttcttcaattttctcgt |
30896671 |
T |
|
| Q |
108 |
gttgttttggttgcagtattttcccattgtgcactgcagagtcaccctcttgtgggtgtgaggctgtgagctgaaagcctgaaaccattttttactaaag |
207 |
Q |
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| T |
30896672 |
gttgttttggttgcagtattttcccattgtgcactgcagagtcaccctcttgtgggtgtgaggctgtgagctga--------aaccattttttactaaag |
30896763 |
T |
|
| Q |
208 |
gtttgagttcatcgaagcttttcatgaactgcccaagaggttcaccttcatcatcaacatccatcataaatatctcaatattttttatgctctgattgat |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
30896764 |
gtttgagttcatcgaagcttttcatgaactgcccaagaggttcaccttcatcatcaacatccatcataaacatctcaata-tttttatgctctgattgat |
30896862 |
T |
|
| Q |
308 |
gttccatagtaaaaggttcatcacataagaaacataaactcatttccatcttcttccacttcgagagcactnnnnnnnttcattggattgtgtttagcac |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30896863 |
gttccatagtaaaaggttcatcacataagaaacataaactcatttccatcttcttccacttcgagagcactaaaaaaattcattggattgtgtttagcac |
30896962 |
T |
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| Q |
408 |
ccatcaatcacgcaagatggaaggctcgtgataccaattgacataaataaaactaatacttaaaataggctaattcacc |
486 |
Q |
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| T |
30896963 |
ccatcaatcacgcaagatggaaggctcgtgataccaattgacataaataaaactaatacttgaaataggctaattcacc |
30897041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 446
Target Start/End: Original strand, 55286890 - 55287022
Alignment:
| Q |
315 |
agtaaaaggttcatcacataagaaacataaactcatttcca--tcttcttccacttcgagagcactnnnnnnnttcattggattgtgtttagcacccatc |
412 |
Q |
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||||| ||| ||||||||||||||||||| ||||||||||| | |||||||||||| ||| |||| |||||| |||| ||| ||| |||| |
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| T |
55286890 |
agtaagaggctcatcacataagaaacatacactcatttccattttttcttccacttcaagaacactcaaagtcttcattaatttgtatttggcagccat- |
55286988 |
T |
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| Q |
413 |
aatcacgcaagatggaaggctcgtgataccaatt |
446 |
Q |
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| T |
55286989 |
aatcacacaagatcgaaggctcgtgataccaatt |
55287022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 359
Target Start/End: Complemental strand, 15689306 - 15689262
Alignment:
| Q |
315 |
agtaaaaggttcatcacataagaaacataaactcatttccatctt |
359 |
Q |
| |
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| T |
15689306 |
agtaagaggttcatcacataggaagcataaactcatttccatctt |
15689262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 455 - 485
Target Start/End: Complemental strand, 27702006 - 27701976
Alignment:
| Q |
455 |
taaaactaatacttaaaataggctaattcac |
485 |
Q |
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| T |
27702006 |
taaaactaatacttaaaataggctaattcac |
27701976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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