View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16152_high_3 (Length: 239)
Name: NF16152_high_3
Description: NF16152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16152_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 6 - 136
Target Start/End: Complemental strand, 34203734 - 34203604
Alignment:
| Q |
6 |
ataatcattctaaagagaacgaaaaacatcttaaatgttaatacgatcaaattaatttttgttgttgttgaggtgcgatcaaattaatcttagtagtctt |
105 |
Q |
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| T |
34203734 |
ataatcattttaaagagaacgaaaaacatcttaaatgttaatacgatcaaattaatttttgttattgttgaggtgcgatcaaattaatcttagtagtctt |
34203635 |
T |
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| Q |
106 |
gcgagtagagatcaaatcataaggcaactta |
136 |
Q |
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| T |
34203634 |
gcgagtagagatcaaatcataaggcaactta |
34203604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 152 - 221
Target Start/End: Complemental strand, 34203616 - 34203547
Alignment:
| Q |
152 |
ataaggcaacttattattgaaactaaacttatttttccacaaatattgtattcctaatgaagggtattgg |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
34203616 |
ataaggcaacttattattgaaactaaacttatttttccacaaatattctattcctaatgaagggtattgg |
34203547 |
T |
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