View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16152_low_1 (Length: 1122)
Name: NF16152_low_1
Description: NF16152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16152_low_1 |
 | |
|
| [»] scaffold0157 (1 HSPs) |
| | |
|
| [»] scaffold0044 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0157 (Bit Score: 839; Significance: 0; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 839; E-Value: 0
Query Start/End: Original strand, 20 - 1103
Target Start/End: Original strand, 34986 - 36079
Alignment:
| Q |
20 |
caacacagccaaggatccctcaaaatcgtaacagaccatatgcgaacacggatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggt |
119 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34986 |
caacacatccaaggatccctcaaaattggaacagaccatatgcgaacacgaatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggt |
35085 |
T |
|
| Q |
120 |
ccatcaccactcacgttgcgagaaaacataacctcaccaagagagaaaacaaatctcatatcaacatccacgcaacaaaaagacaaaaactcaggccacc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35086 |
ccatcaccactcacgttgcgagaaaacataacctcaccaagagagaaaacaaatctcatatcaacttccacgcaacaaaaagacaaaaactcaggccatt |
35185 |
T |
|
| Q |
220 |
agtgttgaaaggctagagaaacaaagccgcaacacatattacgaccccactagaggtcgaaccacgaccaaaaatcatgttgcaggaccatcgacagata |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||| ||| |
|
|
| T |
35186 |
agtgttgaaaggctagagaaacaaagccgcaacacatattacgaccccactagaggtcgaaccaccgccaaaaaccgtgttgcaggaccatcgacaaata |
35285 |
T |
|
| Q |
320 |
tggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacgacgtccacatcttaacaagattcattggagtttggatggtggtggcga |
419 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
35286 |
tggaggtaggtggtgcagagggctcaagctgctcgtcgcaccaccataaacgacgtccaaatcttaagaagattcattggattttggatggcggtggcga |
35385 |
T |
|
| Q |
420 |
attttgtgtagagagaggacaactaaaagagacgctaaaagtaagcgtagttgaagatccaacaacaccaaccttcttctcagagcaaatatggggatcg |
519 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35386 |
gttttgtgtagagagaggacaaataaaagagacgctaaaagtaagcgtacttgaagatccaacaacaccaaccttcttctcagagcaaaaatggggatcg |
35485 |
T |
|
| Q |
520 |
tgtacctacacaaactccaacggtcaagtcagtaaacaatgtggatgataagctatttcaagtgagagtaagcatacatgagccaattcccctgagttag |
619 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
35486 |
tgtacctgcacaaactccaacggtcaagtcagtaaacaacgtggatgataagctatttcgggtgagagtaagcatacatgagccaatgcccttgagttag |
35585 |
T |
|
| Q |
620 |
tcttattgtgtaggtttagggtttcggtccttgaacctttacctggactactgtccttatgggactattataagcaaattatgaggagatgatgatggat |
719 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
35586 |
tcttattgtgtaggtttagggtttcggtccttgaacctttacctggactactgtccttatgggaccattataagcaaattatgaggagataatgatggat |
35685 |
T |
|
| Q |
720 |
ttgaacaggatggtctagattacctttagggagtcattattccattaaggtttcgagtgaggtccatatcatggttcttatggcccttgtggaagggata |
819 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35686 |
ctgaacaggatggtctagattacctttagggagtcattattccagtaaggtttcgagtgaggtccatatcatggttcttatggcccttgtggaagagata |
35785 |
T |
|
| Q |
820 |
tccaaaacctatcaaggggttggccttggccaaaccagaataaagagtaacaattccactacaatatgaacaatataagttaaaagttgatttaattgtg |
919 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
35786 |
tccaaaacctatgaaggggttggccttggccaaaccaaaataaagagtaacaattccactacaatatgaacaatataagttaaaagttggtttaattgtg |
35885 |
T |
|
| Q |
920 |
gtattttcaannnnnnnnaactatatacgataaaataagcacaatnnnnnnncaataagacaaaaacattagtgattgccttgacactaggataagagat |
1019 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
35886 |
gtattttcaattttttttaactatatacgataaaataagcacaataaaaaaacaataagacaaaaacattagtgatcaccttgacactagaataatagat |
35985 |
T |
|
| Q |
1020 |
aaaaattaatagatgatatatgtgtgtgtgtccgtccgtgtgttat------------ataagcaatgtcaattcaccaaaaaattggatattcac |
1103 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35986 |
aaaaattaatagatgatata--tgtgtgtgtccgtccgtgtgttatattccatgataaataagcaatgtcaattcaccaaaaatttggatattcac |
36079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 839; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 839; E-Value: 0
Query Start/End: Original strand, 20 - 1103
Target Start/End: Complemental strand, 12485491 - 12484398
Alignment:
| Q |
20 |
caacacagccaaggatccctcaaaatcgtaacagaccatatgcgaacacggatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggt |
119 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12485491 |
caacacatccaaggatccctcaaaattggaacagaccatatgcgaacacgaatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggt |
12485392 |
T |
|
| Q |
120 |
ccatcaccactcacgttgcgagaaaacataacctcaccaagagagaaaacaaatctcatatcaacatccacgcaacaaaaagacaaaaactcaggccacc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12485391 |
ccatcaccactcacgttgcgagaaaacataacctcaccaagagagaaaacaaatctcatatcaacttccacgcaacaaaaagacaaaaactcaggccatt |
12485292 |
T |
|
| Q |
220 |
agtgttgaaaggctagagaaacaaagccgcaacacatattacgaccccactagaggtcgaaccacgaccaaaaatcatgttgcaggaccatcgacagata |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||| ||| |
|
|
| T |
12485291 |
agtgttgaaaggctagagaaacaaagccgcaacacatattacgaccccactagaggtcgaaccaccgccaaaaaccgtgttgcaggaccatcgacaaata |
12485192 |
T |
|
| Q |
320 |
tggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacgacgtccacatcttaacaagattcattggagtttggatggtggtggcga |
419 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
12485191 |
tggaggtaggtggtgcagagggctcaagctgctcgtcgcaccaccataaacgacgtccaaatcttaagaagattcattggattttggatggcggtggcga |
12485092 |
T |
|
| Q |
420 |
attttgtgtagagagaggacaactaaaagagacgctaaaagtaagcgtagttgaagatccaacaacaccaaccttcttctcagagcaaatatggggatcg |
519 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12485091 |
gttttgtgtagagagaggacaaataaaagagacgctaaaagtaagcgtacttgaagatccaacaacaccaaccttcttctcagagcaaaaatggggatcg |
12484992 |
T |
|
| Q |
520 |
tgtacctacacaaactccaacggtcaagtcagtaaacaatgtggatgataagctatttcaagtgagagtaagcatacatgagccaattcccctgagttag |
619 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
12484991 |
tgtacctgcacaaactccaacggtcaagtcagtaaacaacgtggatgataagctatttcgggtgagagtaagcatacatgagccaatgcccttgagttag |
12484892 |
T |
|
| Q |
620 |
tcttattgtgtaggtttagggtttcggtccttgaacctttacctggactactgtccttatgggactattataagcaaattatgaggagatgatgatggat |
719 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
12484891 |
tcttattgtgtaggtttagggtttcggtccttgaacctttacctggactactgtccttatgggaccattataagcaaattatgaggagataatgatggat |
12484792 |
T |
|
| Q |
720 |
ttgaacaggatggtctagattacctttagggagtcattattccattaaggtttcgagtgaggtccatatcatggttcttatggcccttgtggaagggata |
819 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
12484791 |
ctgaacaggatggtctagattacctttagggagtcattattccagtaaggtttcgagtgaggtccatatcatggttcttatggcccttgtggaagagata |
12484692 |
T |
|
| Q |
820 |
tccaaaacctatcaaggggttggccttggccaaaccagaataaagagtaacaattccactacaatatgaacaatataagttaaaagttgatttaattgtg |
919 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
12484691 |
tccaaaacctatgaaggggttggccttggccaaaccaaaataaagagtaacaattccactacaatatgaacaatataagttaaaagttggtttaattgtg |
12484592 |
T |
|
| Q |
920 |
gtattttcaannnnnnnnaactatatacgataaaataagcacaatnnnnnnncaataagacaaaaacattagtgattgccttgacactaggataagagat |
1019 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
12484591 |
gtattttcaattttttttaactatatacgataaaataagcacaataaaaaaacaataagacaaaaacattagtgatcaccttgacactagaataatagat |
12484492 |
T |
|
| Q |
1020 |
aaaaattaatagatgatatatgtgtgtgtgtccgtccgtgtgttat------------ataagcaatgtcaattcaccaaaaaattggatattcac |
1103 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
12484491 |
aaaaattaatagatgatata--tgtgtgtgtccgtccgtgtgttatattccatgataaataagcaatgtcaattcaccaaaaatttggatattcac |
12484398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 56 - 1050
Target Start/End: Complemental strand, 12469331 - 12468331
Alignment:
| Q |
56 |
catatgcgaacacggatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctca |
155 |
Q |
| |
|
||||| |||||| |||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
12469331 |
catatacgaacattgatttggtatcaccaatcgtgacatattcatcaccaccatcgtgaccagtccatcacaacccacgttgcgagaaaacaaaacctca |
12469232 |
T |
|
| Q |
156 |
ccaagagagaaaacaaatctcatatcaacatccacgcaacaaaaagacaaaaactcaggccaccagtgttgaaaggctagagaaacaaagccgcaacaca |
255 |
Q |
| |
|
||||||||||||||| |||| |||||||| |||| ||||||||||| |||||| |||||| |||||||||| | |||||||||||||||||| | |
|
|
| T |
12469231 |
ccaagagagaaaacatatctggtatcaacaaccacacaacaaaaagatgaaaactaaggccatcagtgttgaataacccaagaaacaaagccgcaacata |
12469132 |
T |
|
| Q |
256 |
tattacgaccccactagaggtcgaaccacgaccaaaaatcatgttgcaggaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgt |
355 |
Q |
| |
|
||||| || |||||||||| ||||||||| | | ||| | |||||||| |||| || |||||||||||||||||||||||||| |||| ||||| | |
|
|
| T |
12469131 |
tattatgatcccactagagctcgaaccaccgcaacaaaccgccgtgcaggactatcgtcaaatatggaggtaggtggtgcagagggctcaagatgctcat |
12469032 |
T |
|
| Q |
356 |
cgcaccaccataaacgacgtccacatcttaacaagattcattggagtttggatggtggtggcgaattttgtgtagagagaggacaactaaaagagacgct |
455 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||| |||||| | ||| ||| |||||||| ||||||||||||||| | || |||||||||||| |
|
|
| T |
12469031 |
cgcaccaccataaacgacgtttacatcttaagaagatgtattggattctgggtggcggtggcgagttttgtgtagagagatggcagagaaaagagacgct |
12468932 |
T |
|
| Q |
456 |
aaaagtaagcgtagttgaagatccaacaacaccaaccttcttctcagagcaaatatggggatcgtgtacctacacaaactccaacggtcaagtcagtaaa |
555 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||| | ||||||| |||||| |||||| |
|
|
| T |
12468931 |
aaaagtaagggtatttgaagatccaacaacaccaaccttcttctcagggcaaatatggggatggtgtacctgcacacaatccaacgatcaagttagtaaa |
12468832 |
T |
|
| Q |
556 |
caatgtggatgataagctatttcaagtgagagtaagcatacatgagccaattcccctgagttagtcttattgtgtaggtttagggtttcggtccttgaac |
655 |
Q |
| |
|
| | |||| |||||| |||||| |||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12468831 |
cgacgtgggtgataacttatttcgggtgagagtaagcatacttgagccaatgcccttgagttagtcttattgtgtaggtttagggttttggtccttgaac |
12468732 |
T |
|
| Q |
656 |
ctttacctggactactgtccttatgggactattataagcaaattatgaggagatgatgatggatttgaacaggatggtctagattacctttagggagtca |
755 |
Q |
| |
|
||||||||||| | |||||| ||||||| | |||||||||||||||||||||||||||||| |||| ||||||||||||| || |||| |||| |
|
|
| T |
12468731 |
ctttacctggaaaattgtcctcatgggacctctgtaagcaaattatgaggagatgatgatggatccaaacatgatggtctagattgccaccagggggtca |
12468632 |
T |
|
| Q |
756 |
ttattccattaaggtttcgagtgaggtccatatcatggttcttatggcccttgtggaagggatatccaaaacctatcaaggggttggccttggccaaacc |
855 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
12468631 |
ttattccagtgcggtttcgagtgaggtccatatcatgattctcatggcccttgtggaagggatatccaaaacctattaacgggttggccttggccaaacc |
12468532 |
T |
|
| Q |
856 |
agaataaagagtaacaattccactacaatatgaacaatataagttaaaagttgatttaattgtggtatttt----caannnnnnnnaactatatacgata |
951 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || |||||||||||||| |
|
|
| T |
12468531 |
agaataaagagcaacaattccactacaatatgaacaatataagttaaaagttgatttgattgtgttattttacaaaaaaaaattataactatatacgata |
12468432 |
T |
|
| Q |
952 |
aaataagcacaatnnnnnnncaataagacaaaaacattagtgattgccttgacactaggata--agagataaaaattaatagatgatatatgtgtgtgtg |
1049 |
Q |
| |
|
|||| |||||||| ||||| |||||| ||||||||||| || |||||||||| ||| | | |||||||||||| ||||||| || | |||||| |
|
|
| T |
12468431 |
aaatcagcacaataaaaaagcaatatgacaaacacattagtgatcgcattgacactagcataatataaataaaaattaatcgatgatagatatatgtgtg |
12468332 |
T |
|
| Q |
1050 |
t |
1050 |
Q |
| |
|
| |
|
|
| T |
12468331 |
t |
12468331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 56 - 1050
Target Start/End: Complemental strand, 12466687 - 12465692
Alignment:
| Q |
56 |
catatgcgaacacggatttggtatcaagaatcatgacatattcatcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctca |
155 |
Q |
| |
|
||||| |||||| |||||||||||| |||| |||||||| |||||||||||||||||| ||||||||| || ||| ||||||||||||| ||||||| |
|
|
| T |
12466687 |
catatacgaacattgatttggtatcaccaatcgtgacatat-catcaccaccatcgtgaccagtccatcacaacccacattgcgagaaaacaaaacctca |
12466589 |
T |
|
| Q |
156 |
ccaagagagaaaacaaatctcatatcaacatccacgcaacaaaaagacaaaaactcaggccaccagtgttgaaaggctagagaaacaaagccgcaacaca |
255 |
Q |
| |
|
||||||||||||||| |||| |||||||| |||| ||||||||||| |||||| |||||| |||||||||| | ||||||||||||| |||||||| |
|
|
| T |
12466588 |
ccaagagagaaaacatatctggtatcaacaaccacacaacaaaaagatgaaaactaaggccatcagtgttgaacaaccagagaaacaaagctgcaacaca |
12466489 |
T |
|
| Q |
256 |
tattacgaccccactagaggtcgaaccacgaccaaaaatcatgttgcaggaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgt |
355 |
Q |
| |
|
|||||| | |||| ||||| ||||||||| | ||||| | || ||||| || | || |||||||||||||||||||||||||| |||| ||||| | |
|
|
| T |
12466488 |
tattacaatcccattagagctcgaaccaccgcaaaaaaccgccgtgtaggactattgtcaaatatggaggtaggtggtgcagagggctcaagatgctcat |
12466389 |
T |
|
| Q |
356 |
cgcaccaccataaacgacgtccacatcttaacaagattcattggagtttggatggtggtggcgaattttgtgtagagagaggacaactaaaagagacgct |
455 |
Q |
| |
|
| ||||||||||||||||||| ||||||||| ||| |||||| | || |||||||||||| ||||||||||||||| | || |||||||||||| |
|
|
| T |
12466388 |
cacaccaccataaacgacgtctacatcttaa---gatgtattggattccgggtggtggtggcgagttttgtgtagagagatggcagagaaaagagacgct |
12466292 |
T |
|
| Q |
456 |
aaaagtaagcgtagttgaagatccaacaacaccaaccttcttctcagagcaaatatggggatcgtgtacctacacaaactccaacggtcaagtcagtaaa |
555 |
Q |
| |
|
||||||||| ||| ||||||||||| |||||||||| || || |||| |||||||||||||| |||||||| |||| | ||||||| |||||| |||||| |
|
|
| T |
12466291 |
aaaagtaagggtatttgaagatccatcaacaccaacattttt-tcagggcaaatatggggatggtgtacctgcacacaatccaacgatcaagttagtaaa |
12466193 |
T |
|
| Q |
556 |
caatgtggatgataagctatttcaagtgagagtaagcatacatgagccaattcccctgagttagtcttattgtgtaggtttagggtttcggtccttgaac |
655 |
Q |
| |
|
| | ||| |||||| |||||| ||||||||||||||||| ||||||||| ||| |||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
12466192 |
cgacttgggtgataacgtatttcgagtgagagtaagcatacctgagccaatgcccttgagttagtcataatgtgtaggtttagggtttcggtccttgaac |
12466093 |
T |
|
| Q |
656 |
ctttacctggactactgtccttatgggactattataagcaaattatgaggagatgatgatggatttgaacaggatggtctagattacctttagggagtca |
755 |
Q |
| |
|
||||||| ||| |||||||| ||||||| | | ||||||||||||||||||||||| |||||| |||||||||||||||||| | | |||| |||| |
|
|
| T |
12466092 |
ctttaccaggaaaactgtcctcatgggaccactgtaagcaaattatgaggagatgataatggatccaaacaggatggtctagattgacatcagggggtca |
12465993 |
T |
|
| Q |
756 |
ttattccattaaggtttcgagtgaggtccatatcatggttcttatggcccttgtggaagggatatccaaaacctatcaaggggttggccttggccaaacc |
855 |
Q |
| |
|
|||||||| | ||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
12465992 |
ttattccagtgcggttttgagtgaggtccatatcatgattctcatggcccttgtggaagggatatccaaaacctatcaacgggttaaccttggccaaacc |
12465893 |
T |
|
| Q |
856 |
agaataaagagtaacaattccactacaatatgaacaatataagttaaaagttgatttaattgtggtattttc-----aannnnnnnnaactatatacgat |
950 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||| || ||||||||||||| |
|
|
| T |
12465892 |
agaataaagagtaacaattccactacgatatgaacaatataagttaaaagttgatttgattgtgatattttccaaaaaaaaaattataactatatacgat |
12465793 |
T |
|
| Q |
951 |
aaaataagcacaatnnnnnnncaataagacaaaaacattagtgattgccttgacactaggata--agagataaaaattaatagatgatatatgtgtgtgt |
1048 |
Q |
| |
|
|||||||||||||| ||||| |||||| ||||||||||| || |||||||||| ||| | | |||||||||||||||||||| || | ||||| |
|
|
| T |
12465792 |
aaaataagcacaat-aaaaagcaatatgacaaacacattagtgatcgcattgacactagcataatataaataaaaattaatagatgataaatatatgtgt |
12465694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 154 - 392
Target Start/End: Original strand, 6410151 - 6410395
Alignment:
| Q |
154 |
caccaagagagaaaacaaatctcatatcaacatccacgcaacaaaaagacaaaaactcaggccaccagtgttgaaaggctagagaaacaaagccgcaaca |
253 |
Q |
| |
|
|||||||||||||| ||||| ||||| | ||||||||||||| ||| |||| |||||||| ||| |||||| ||| ||||||||| ||| |||||| |
|
|
| T |
6410151 |
caccaagagagaaattgaatcttgtatcagccaccacgcaacaaaa-gacgaaaaatcaggccatcagagttgaacggccagagaaacagagctgcaaca |
6410249 |
T |
|
| Q |
254 |
catattacgaccccactagaggtcga--------accacgaccaaaaatcatgttgcaggaccatcgacagatatggaggtaggtggtgcagagggccca |
345 |
Q |
| |
|
|| | |||||||||| ||||||||| ||||| |||||| || ||||||||||| ||| || |||||||||||| ||| |||||| || |
|
|
| T |
6410250 |
caattcacgaccccacaagaggtcgaccgctggaaccaccgccaaaaccgccgt-gcaggaccatcaacatatttggaggtaggtgatgcggagggcaca |
6410348 |
T |
|
| Q |
346 |
agctgctcgtcgcaccaccataaacgacgtccacatcttaacaagat |
392 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
6410349 |
agccgctcgtcgcaccaccataaacgacgtctacatcttaagaagat |
6410395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 305 - 371
Target Start/End: Original strand, 38093658 - 38093724
Alignment:
| Q |
305 |
gaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacg |
371 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
38093658 |
gaccatcggcagatctggaggtaggtggtgcagagggcttaagccgctcgtcgcaccaccataaacg |
38093724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 47518480 - 47518421
Alignment:
| Q |
95 |
attcatcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc |
154 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| | |||||||| |||||||||||| |
|
|
| T |
47518480 |
attcatcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctc |
47518421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 305 - 365
Target Start/End: Original strand, 55729142 - 55729202
Alignment:
| Q |
305 |
gaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgtcgcaccacca |
365 |
Q |
| |
|
|||||||| || || |||||||||||||||| |||||| |||| |||||||||||||||| |
|
|
| T |
55729142 |
gaccatcggcatatctggaggtaggtggtgcggagggcttaagccgctcgtcgcaccacca |
55729202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 23054254 - 23054177
Alignment:
| Q |
104 |
caccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc-------accaagagagaaaacaaatc |
174 |
Q |
| |
|
|||||||||||||| ||||||||||| | |||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
23054254 |
caccatcgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccacaaccaagagagaaaacaaatc |
23054177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 5e-22; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 302 - 392
Target Start/End: Complemental strand, 38531022 - 38530932
Alignment:
| Q |
302 |
caggaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacgacgtccacatcttaacaagat |
392 |
Q |
| |
|
|||||||||||||| || |||| ||||||||||| |||||| ||||| |||||||||||||||||||||||| || ||||||||| ||||| |
|
|
| T |
38531022 |
caggaccatcgacatatctggaagtaggtggtgcggagggctcaagccgctcgtcgcaccaccataaacgacctctacatcttaagaagat |
38530932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 1551624 - 1551571
Alignment:
| Q |
98 |
catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataac |
151 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | |||||||| ||||||||| |
|
|
| T |
1551624 |
catcaccaccatcgtgactgatccatcaccacctatgttgcgagcaaacataac |
1551571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 174
Target Start/End: Complemental strand, 17281970 - 17281887
Alignment:
| Q |
98 |
catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc-------accaagagagaaaacaaatc |
174 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||| | |||||||| |||||||||||| |||||||||||||||||||| |
|
|
| T |
17281970 |
catcaccaccattgtgactgatccatcaccacctatgttgcgagcaaacataacctccaccactaccaagagagaaaacaaatc |
17281887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 788 - 849
Target Start/End: Complemental strand, 29372580 - 29372519
Alignment:
| Q |
788 |
tcatggttcttatggcccttgtggaagggatatccaaaacctatcaaggggttggccttggc |
849 |
Q |
| |
|
||||||| ||||| | || | ||||||||||||||| ||||||||||||| | ||||||||| |
|
|
| T |
29372580 |
tcatggtccttataggccctatggaagggatatccataacctatcaagggttgggccttggc |
29372519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 32058960 - 32059028
Alignment:
| Q |
303 |
aggaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacg |
371 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||| ||||| ||| |||||||||||||||||| |
|
|
| T |
32058960 |
aggaccatcgacagatctggaggtaggtggtgcggagggctcaagccgctggtcgcaccaccataaacg |
32059028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 34118068 - 34118124
Alignment:
| Q |
98 |
catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc |
154 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| | |||||||| |||||||||||| |
|
|
| T |
34118068 |
catcaccaccatcgtgaccgatccatcaccacctatgttgcgagcaaacataacctc |
34118124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 302 - 391
Target Start/End: Original strand, 30845854 - 30845943
Alignment:
| Q |
302 |
caggaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacgacgtccacatcttaacaaga |
391 |
Q |
| |
|
||||||||||| || || |||||||||||||||| ||||| ||||| |||||||||||||||||||||| | || ||||||||| |||| |
|
|
| T |
30845854 |
caggaccatcggcaaatctggaggtaggtggtgcggagggttcaagccgctcgtcgcaccaccataaacggcctctacatcttaagaaga |
30845943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0044 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 305 - 392
Target Start/End: Complemental strand, 42536 - 42449
Alignment:
| Q |
305 |
gaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacgacgtccacatcttaacaagat |
392 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |||||| |||| ||||||||||||||||||||| || || ||||| ||| ||||| |
|
|
| T |
42536 |
gaccatcggcagatctggaggtaggtggtgcggagggcttaagccgctcgtcgcaccaccataaacaacctctacatcgtaagaagat |
42449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 386
Target Start/End: Original strand, 6444347 - 6444433
Alignment:
| Q |
300 |
tgcaggaccatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacgacgtccacatcttaa |
386 |
Q |
| |
|
|||||||||||| |||||| ||||||||| || ||| |||| | ||||| ||||||| |||||||||||||||| || | ||||||| |
|
|
| T |
6444347 |
tgcaggaccatccacagatctggaggtagctgatgcggaggacacaagccgctcgtcacaccaccataaacgacatctagatcttaa |
6444433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 10408921 - 10408977
Alignment:
| Q |
98 |
catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc |
154 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| | |||||||| |||||||||||| |
|
|
| T |
10408921 |
catcaccaccatcgtgaccgttccatcaccacctatgttgcgagcaaacataacctc |
10408977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000003; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 27170111 - 27170059
Alignment:
| Q |
102 |
accaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc |
154 |
Q |
| |
|
|||||||||||||| | |||||||||||| |||||||||| |||||||||||| |
|
|
| T |
27170111 |
accaccatcgtgaccgatccatcaccacttacgttgcgagcaaacataacctc |
27170059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 154
Target Start/End: Original strand, 18697029 - 18697085
Alignment:
| Q |
98 |
catcaccaccatcgtgactggtccatcaccactcacgttgcgagaaaacataacctc |
154 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| | |||||| | |||||||||||| |
|
|
| T |
18697029 |
catcaccaccatcgtgactgatccatcaccacctatgttgcgggcaaacataacctc |
18697085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 400
Target Start/End: Original strand, 12156806 - 12156900
Alignment:
| Q |
306 |
accatcgacagatatggaggtaggtggtgcagagggcccaagctgctcgtcgcaccaccataaacgacgtccacatcttaacaagattcattgga |
400 |
Q |
| |
|
||||||| | ||| |||||||||||||||| || ||| |||| |||||||||||||||| |||| | || ||||| ||| |||||| |||||| |
|
|
| T |
12156806 |
accatcggcggatctggaggtaggtggtgcggaaggcttaagccgctcgtcgcaccaccaataacggcctctacatcgtaagaagattgattgga |
12156900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 868 - 923
Target Start/End: Complemental strand, 254835 - 254780
Alignment:
| Q |
868 |
aacaattccactacaatatgaacaatataagttaaaagttgatttaattgtggtat |
923 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||| || |||| |||||||||| |
|
|
| T |
254835 |
aacaattccactgcaacatgaacaatataagttaaatctttatttgattgtggtat |
254780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 622 - 664
Target Start/End: Complemental strand, 51264197 - 51264155
Alignment:
| Q |
622 |
ttattgtgtaggtttagggtttcggtccttgaacctttacctg |
664 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
51264197 |
ttatagtgtaggtttaggtttttggtccttgaacctttacctg |
51264155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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