View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16152_low_2 (Length: 600)
Name: NF16152_low_2
Description: NF16152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16152_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 22 - 366
Target Start/End: Complemental strand, 38631075 - 38630731
Alignment:
| Q |
22 |
caggattctggggttacctcatgcaaattacatatcaggttaagtttcttccagaacattaattatgatgaatatttgttttctaatttgtcaccaatat |
121 |
Q |
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| T |
38631075 |
caggattctggggttacctcatgcaaattacatttcaggttaagtttcttcaagaacattaattatgatgaatatttgttttctaatttgtcaccaatat |
38630976 |
T |
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| Q |
122 |
tctaatccagttgaaactgatattctgcatttggcagaccagtgcaggggctgtcatattaacagatattgtcttttggtgcgttattgtcccattttta |
221 |
Q |
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| T |
38630975 |
tctaatccagttgaaactgatattctgcatttggcagaccagtgcagggtctatcatattaacagatattgtcttttggtgcgttattgtcccattttta |
38630876 |
T |
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| Q |
222 |
tccatttctcgttttaagctaaacatggtatgtgcacttcttctatatatatcacatattcttagtaatttacataataatatgaatgaaattcaacaaa |
321 |
Q |
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| T |
38630875 |
tccatttctcgttttaagctaaacatggtatgtgcacttcttctatatatatcacatattcttagtaatttacataataatatgaatgaaattcaacaaa |
38630776 |
T |
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| Q |
322 |
tatttgcatgatagattgataattgatctttggaacttggaagta |
366 |
Q |
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| T |
38630775 |
tatttgtatgatagattgataattgatctttggaacttggaagta |
38630731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 365 - 584
Target Start/End: Complemental strand, 38630701 - 38630474
Alignment:
| Q |
365 |
tacagttgatgggttgcatgcataccttgaacgccattttccttcttttggataccatgctgaacaatcttgtaagtaacacactcactagaa------- |
457 |
Q |
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| T |
38630701 |
tacagttgatgggttgcatgcataccttgaacgccattttccttcttttggatactatgctgaacaatcttgtaagtaacacactcactagagaagtaga |
38630602 |
T |
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| Q |
458 |
-cataaaactaagcactaattttatagaacactgaggcacatgtaattaatggtttcaatttgttgtatgtatatgtgttcttttttcagccttttccgt |
556 |
Q |
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| T |
38630601 |
gcataaaactaagcaccaattttatagaacactgaggcacatgtaattaatggtttcaatttgttgtatgtatatgtgttcttttttcagccttttccgt |
38630502 |
T |
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| Q |
557 |
ggtttagaatagcatattttgtgctctg |
584 |
Q |
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| T |
38630501 |
ggtttagaatagcatattttgtgctctg |
38630474 |
T |
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