View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16152_low_3 (Length: 386)

Name: NF16152_low_3
Description: NF16152
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16152_low_3
NF16152_low_3
[»] chr8 (3 HSPs)
chr8 (16-218)||(44376699-44376901)
chr8 (309-367)||(44377000-44377058)
chr8 (18-216)||(36402259-36402462)
[»] chr6 (6 HSPs)
chr6 (16-218)||(8113429-8113631)
chr6 (309-367)||(8113731-8113789)
chr6 (16-61)||(709378-709423)
chr6 (31-216)||(10966162-10966355)
chr6 (16-60)||(2138533-2138577)
chr6 (16-60)||(10965286-10965330)
[»] chr3 (7 HSPs)
chr3 (16-213)||(41418816-41419013)
chr3 (309-367)||(41419118-41419176)
chr3 (29-100)||(43454069-43454141)
chr3 (16-60)||(43453495-43453539)
chr3 (16-50)||(42020844-42020878)
chr3 (168-216)||(43454008-43454054)
chr3 (26-66)||(35982561-35982601)
[»] chr7 (4 HSPs)
chr7 (44-218)||(33261215-33261387)
chr7 (18-216)||(24873809-24874012)
chr7 (313-367)||(33261052-33261106)
chr7 (25-98)||(27917760-27917834)
[»] chr4 (5 HSPs)
chr4 (18-216)||(21280093-21280296)
chr4 (24-216)||(21280400-21280597)
chr4 (29-98)||(45141052-45141122)
chr4 (168-216)||(45140988-45141035)
chr4 (29-60)||(45140523-45140554)
[»] chr1 (3 HSPs)
chr1 (18-216)||(5491122-5491325)
chr1 (18-216)||(13415566-13415771)
chr1 (23-60)||(5490573-5490610)
[»] scaffold0006 (1 HSPs)
scaffold0006 (20-216)||(285238-285441)
[»] chr2 (1 HSPs)
chr2 (16-84)||(7754068-7754137)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 4e-94; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 44376699 - 44376901
Alignment:
Q  16 ataccaataaattaaatagatggttcagatttattcaaattaaaaagagaacatgtctaacttttcacattcaacattatcctcaaatagatttcattta 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| | |||||||||    
T  44376699 ataccaataaattaaatagatggttcagatttattcaaattaaaaggagaacatgtttaacttttcacattcaacattatcctcaaatggctttcattta 44376798  T
Q  116 tgttatactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaaccctaa 215  Q
    |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44376799 tgttatactataattcttctatcaaaatgagatactatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaatcctaa 44376898  T
Q  216 act 218  Q
    |||    
T  44376899 act 44376901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 44377000 - 44377058
Alignment:
Q  309 caaagtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagca 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44377000 caaagtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagca 44377058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 36402259 - 36402462
Alignment:
Q  18 accaataaattaaatagatggttcagatttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaatagatttcatttat 116  Q
    ||||||| |||||||| |||||| | ||| ||||||||||| | | |||||||||| |||||||||||||||| |||||||||| || | ||||| ||||    
T  36402259 accaatagattaaataaatggtttaaattcattcaaattaagagggagaacatgtcaaacttttcacattcaatattatcctcagatggttttcacttat 36402358  T
Q  117 gtt-----atactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaacc 211  Q
    |||      | |||  |||||||  ||||||| |||   | ||||||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||| |    
T  36402359 gtttacaattcctactattcttccttcaaaataagacactctctttacttccaatgattatgcactcaaaccat-aaaatctgatatcaaattatgaatc 36402457  T
Q  212 ctaaa 216  Q
    |||||    
T  36402458 ctaaa 36402462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 175; Significance: 4e-94; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 16 - 218
Target Start/End: Original strand, 8113429 - 8113631
Alignment:
Q  16 ataccaataaattaaatagatggttcagatttattcaaattaaaaagagaacatgtctaacttttcacattcaacattatcctcaaatagatttcattta 115  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||| | |||||||||    
T  8113429 ataccaataaattaaatagatggttcaaatttattcaaattaaaaggagaacatgtcttacttttcacattcaacattatcatcaaatggctttcattta 8113528  T
Q  116 tgttatactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaaccctaa 215  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8113529 tgttatactataattcttctatcaaaatgagatgctatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaaccctaa 8113628  T
Q  216 act 218  Q
    |||    
T  8113629 act 8113631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 8113731 - 8113789
Alignment:
Q  309 caaagtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagca 367  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8113731 caaagtcattgttatggagtaaattcatttgatcaaccattggtgaattgagaagagca 8113789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 709378 - 709423
Alignment:
Q  16 ataccaataaattaaatagatggttcagatttattcaaattaaaaa 61  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||    
T  709378 ataccaatagattaaatagatggttcagatttattcaaattaaaaa 709423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 10966355 - 10966162
Alignment:
Q  31 atagatggttcagatttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaatagatttcatttatgtt--------at 121  Q
    |||||||||||| ||||||| ||||||||| | |||| ||||  |||||||||||||||| ||||||||||| | | ||||| |||| ||         |    
T  10966355 atagatggttcaaatttatttaaattaaaagggagaatatgtgcaacttttcacattcaatattatcctcaactggttttcaattatctttacaattcct 10966256  T
Q  122 actataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaaccctaaa 216  Q
    ||| ||||||||   ||||||||||||  | ||||| | ||| || ||||| |||||||||||| ||||| ||| ||||||||||||||||||||    
T  10966255 actctaattctttgttcaaaatgagatactctcttttcctccgattatcatacactcaaaccat-aaaatttgaaatcaaattatgaaccctaaa 10966162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 2138533 - 2138577
Alignment:
Q  16 ataccaataaattaaatagatggttcagatttattcaaattaaaa 60  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  2138533 ataccaataaattaaatagatggttgagatttattcaaattaaaa 2138577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 10965286 - 10965330
Alignment:
Q  16 ataccaataaattaaatagatggttcagatttattcaaattaaaa 60  Q
    |||||| || ||||||||||||||||| ||||||| |||||||||    
T  10965286 ataccattagattaaatagatggttcaaatttatttaaattaaaa 10965330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 41418816 - 41419013
Alignment:
Q  16 ataccaataaattaaatagatggttcagatttattcaaattaaaaagagaacatgtctaacttttcacattcaacattatcctcaaatagatttcattta 115  Q
    |||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||   |||||||||    
T  41418816 ataccattagattaaataaatggttcagatttattcaaattaaaaggagaacatgtctaacttttcacattcaacgttatcctcaaatgactttcattta 41418915  T
Q  116 tgttatactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaaccct 213  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41418916 tgttatactataattcttctatcaaaatgagatgctatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaaccct 41419013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 309 - 367
Target Start/End: Original strand, 41419118 - 41419176
Alignment:
Q  309 caaagtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagca 367  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41419118 caaagtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagca 41419176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 29 - 100
Target Start/End: Complemental strand, 43454141 - 43454069
Alignment:
Q  29 aaatagatggttcagatttattcaaatt-aaaaagagaacatgtctaacttttcacattcaacattatcctca 100  Q
    |||||||||||||||||||||||||||| ||| |||||| ||||  |||||||||||||||| ||||||||||    
T  43454141 aaatagatggttcagatttattcaaattcaaagagagaatatgtgcaacttttcacattcaatattatcctca 43454069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 43453495 - 43453539
Alignment:
Q  16 ataccaataaattaaatagatggttcagatttattcaaattaaaa 60  Q
    ||||||||| ||||||||||||||||| ||||||| |||||||||    
T  43453495 ataccaatagattaaatagatggttcaaatttatttaaattaaaa 43453539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 42020878 - 42020844
Alignment:
Q  16 ataccaataaattaaatagatggttcagatttatt 50  Q
    ||||||||| |||||||||||||||||||||||||    
T  42020878 ataccaatagattaaatagatggttcagatttatt 42020844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 43454054 - 43454008
Alignment:
Q  168 atcatgcactcaaaccataaaaatatgagatcaaattatgaaccctaaa 216  Q
    |||||||||||||| ||||||  | ||||||||||||||||||||||||    
T  43454054 atcatgcactcaaatcataaa--tctgagatcaaattatgaaccctaaa 43454008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 35982561 - 35982601
Alignment:
Q  26 attaaatagatggttcagatttattcaaattaaaaagagaa 66  Q
    |||||||| ||||||||||||||||| ||||||||| ||||    
T  35982561 attaaatacatggttcagatttattcgaattaaaaatagaa 35982601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 7e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 44 - 218
Target Start/End: Complemental strand, 33261387 - 33261215
Alignment:
Q  44 atttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaatagatttcatttatgttatactataattcttctatcaaaa 142  Q
    ||||||| ||||||||| | ||||||||||||||||||||||||||| ||||||||||||| | ||||| |    ||||||| ||||| |||||||||||    
T  33261387 atttatttaaattaaaatggagaacatgtctaacttttcacattcaatattatcctcaaatggctttcact----ttatactctaattattctatcaaaa 33261292  T
Q  143 tgagatgttatctttac--ttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaaccctaaact 218  Q
    ||||||  | |||||||   |||||| ||||||||||| |||||| |||||| |||||||||||||||||||||||||    
T  33261291 tgagatactctctttacctctccaattatcatgcactctaaccat-aaaataggagatcaaattatgaaccctaaact 33261215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 24873809 - 24874012
Alignment:
Q  18 accaataaattaaatagatggttcagatttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaatagatttcatttat 116  Q
    ||||||| ||||||||  ||||| ||||||||||||||||||| | |||||||||| |||||||||||||||| |||||||||| || | ||| | ||||    
T  24873809 accaatagattaaataagtggtttagatttattcaaattaaaagggagaacatgtcaaacttttcacattcaatattatcctcatatggttttgagttat 24873908  T
Q  117 gtt-----atactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaacc 211  Q
    |||      | |||  |||||||  ||||||| ||||  | ||||||||||||||||| ||| ||||||||||| ||||| ||| |||||||||||||||    
T  24873909 gtttacaattcctactattcttccttcaaaataagatactctctttacttccaatgattatggactcaaaccat-aaaatctgatatcaaattatgaacc 24874007  T
Q  212 ctaaa 216  Q
    |||||    
T  24874008 ctaaa 24874012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 313 - 367
Target Start/End: Complemental strand, 33261106 - 33261052
Alignment:
Q  313 gtcattgttatggagtaaattcaattgatcaaccattggtgaattgagaagagca 367  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33261106 gtcattgttatggagtaaattcaattgatcaaccataggtgaattgagaagagca 33261052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 27917760 - 27917834
Alignment:
Q  25 aattaaatagatggttcagatttattcaaattaaaaaga-gaacatgtctaacttttcacattcaacattatcct 98  Q
    ||||||||| ||| ||||||||||||||||||||||| | |||||| |  |||| |||||||||||  |||||||    
T  27917760 aattaaatacatgcttcagatttattcaaattaaaaataggaacatatacaactattcacattcaatcttatcct 27917834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 21280093 - 21280296
Alignment:
Q  18 accaataaattaaatagatggttcagatttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaatagatttcatttat 116  Q
    ||||||| |||||||| |||||| ||||| ||||||||||||| | |||||||||| |||||||||||||||| |||||||| | || | ||||| ||||    
T  21280093 accaatagattaaataaatggtttagattcattcaaattaaaagggagaacatgtcaaacttttcacattcaatattatcctgagatggttttcacttat 21280192  T
Q  117 gtta-----tactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaacc 211  Q
    |||      | |||  |||||||  ||||||||||||  | ||||||||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||    
T  21280193 gtttacaattcctactattcttccttcaaaatgagatactctctttacttccaatgattatgcactcaaaccat-aaaatctgatatcaaattatgaacc 21280291  T
Q  212 ctaaa 216  Q
    |||||    
T  21280292 ctaaa 21280296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 216
Target Start/End: Original strand, 21280400 - 21280597
Alignment:
Q  24 aaattaaatagatggttcagatttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaatagatttcatttatgtt--- 119  Q
    |||||||||| |||||| ||||| | ||||||||||| | |||||||||| |||||||||||||||| |||||||||| || | ||||| |||||||       
T  21280400 aaattaaataaatggtttagattcagtcaaattaaaagggagaacatgtcaaacttttcacattcaatattatcctcagatggttttcacttatgtttac 21280499  T
Q  120 --atactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaaccctaaa 216  Q
       | |||  |||||||  ||||||| ||||  | ||||||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||||||    
T  21280500 aattcctactattcttccttcaaaataagatactctctttacttccaatgattatgcactcaaaccat-aaaatctgatatcaaattatgaaccctaaa 21280597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 45141122 - 45141052
Alignment:
Q  29 aaatagatggttcagatttattcaaattaaaa-agagaacatgtctaacttttcacattcaacattatcct 98  Q
    |||||||||||||||||||||||| ||||||| ||| |||||||  |||||||||||||||| ||||||||    
T  45141122 aaatagatggttcagatttattcagattaaaagagataacatgtgcaacttttcacattcaatattatcct 45141052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 45141035 - 45140988
Alignment:
Q  168 atcatgcactcaaaccataaaaatatgagatcaaattatgaaccctaaa 216  Q
    |||||||||||||||||||||| | ||| ||||||||||||||||||||    
T  45141035 atcatgcactcaaaccataaaa-tctgatatcaaattatgaaccctaaa 45140988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 60
Target Start/End: Original strand, 45140523 - 45140554
Alignment:
Q  29 aaatagatggttcagatttattcaaattaaaa 60  Q
    ||||||||||||||||||||||||||||||||    
T  45140523 aaatagatggttcagatttattcaaattaaaa 45140554  T

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Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 5491325 - 5491122
Alignment:
Q  18 accaataaattaaatagatggttcagatttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaatagatttcatttat 116  Q
    |||||||||||||||| |||||| ||||| | ||||||||||| | |||||||||| |||||||||||||||| |||||||||| || | ||||| ||||    
T  5491325 accaataaattaaataaatggtttagattcagtcaaattaaaagggagaacatgtcaaacttttcacattcaatattatcctcagatggttttcacttat 5491226  T
Q  117 gtt-----atactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaacc 211  Q
    |||      | |||  |||||||  ||||||| ||||  | ||||||||||||||||| ||||||||||||||| ||||| ||| |||||||||||||||    
T  5491225 gtttacaattcctactattcttccttcaaaataagatactctctttacttccaatgattatgcactcaaaccat-aaaatctgatatcaaattatgaacc 5491127  T
Q  212 ctaaa 216  Q
    |||||    
T  5491126 ctaaa 5491122  T

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Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 13415566 - 13415771
Alignment:
Q  18 accaataaattaaatagatggttcagatttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaatagatttcatttat 116  Q
    ||||||| |||||||| |||||| ||||| ||||||||||||| | |||||||||| |||||||||||||||  || |||||| |||   ||||| ||||    
T  13415566 accaatagattaaataaatggtttagattcattcaaattaaaagggagaacatgtcaaacttttcacattcagtatcatcctcgaatgattttcacttat 13415665  T
Q  117 gtta--------tactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatga 208  Q
    |||         |||| | |||||||  ||||||||||||  | ||||||||||||||||| |||||||||||||||  |||| ||| ||||||||||||    
T  13415666 gtttacaattcctactctgattcttccttcaaaatgagatactctctttacttccaatgattatgcactcaaaccat--aaatctgatatcaaattatga 13415763  T
Q  209 accctaaa 216  Q
    ||||||||    
T  13415764 accctaaa 13415771  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 5490573 - 5490610
Alignment:
Q  23 taaattaaatagatggttcagatttattcaaattaaaa 60  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  5490573 taaataaaatagatggttaagatttattcaaattaaaa 5490610  T

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Target: scaffold0006 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 285238 - 285441
Alignment:
Q  20 caataaattaaatagatggttcagatttattcaaattaaaaag-agaacatgtctaacttttcacattcaacattatcctcaaatagatttcatttatgt 118  Q
    ||||| |||||||| || ||| ||||| ||||||||||||| | |||||||||| |||||||||||||||| |||||||| | ||   ||||| ||||||    
T  285238 caatagattaaataaattgtttagattcattcaaattaaaagggagaacatgtcaaacttttcacattcaatattatcctaagatgattttcacttatgt 285337  T
Q  119 ta--------tactataattcttctatcaaaatgagatgttatctttacttccaatgatcatgcactcaaaccataaaaatatgagatcaaattatgaac 210  Q
    |         |||| | |||| ||  ||||||||||||  | ||||||||||||||||| |||||||||||||||  |||| ||| ||||||||||||||    
T  285338 ttacaattcctactctgattcatccttcaaaatgagatactctctttacttccaatgattatgcactcaaaccat--aaatctgatatcaaattatgaac 285435  T
Q  211 cctaaa 216  Q
    ||||||    
T  285436 cctaaa 285441  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 7754068 - 7754137
Alignment:
Q  16 ataccaataaattaaatagatggttcagatttattcaaattaaaa-agagaacatgtctaacttttcaca 84  Q
    |||||||||||| |||||||| |||||||||||||||||||||||  ||||| |||| ||||||||||||    
T  7754068 ataccaataaataaaatagatagttcagatttattcaaattaaaagggagaatatgtgtaacttttcaca 7754137  T

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