View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16153_high_2 (Length: 446)
Name: NF16153_high_2
Description: NF16153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16153_high_2 |
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| [»] scaffold0335 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 255
Target Start/End: Original strand, 28463500 - 28463739
Alignment:
| Q |
18 |
aacataacattacatactaattttaggagcatccagttattcataacataacattacatactaatttgcagataatataatgtttttaaatgatgttctt |
117 |
Q |
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| T |
28463500 |
aacataacattacatactaattttaggagcatctagttattcataacataacattacatactaatttgcagataatataatgtttttaaatgatgtactt |
28463599 |
T |
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| Q |
118 |
tttggacgaattttcttacttcgagattcatgaacataacatgtttctctttctcataaacctatttcctcttacgatgaggaattttaagcacaaataa |
217 |
Q |
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| T |
28463600 |
tatagacgagttttcttacttcgagattcatgaacataacatgtttctctttctcataaacctatttccccttacgatgaggaatttgaagcacaaataa |
28463699 |
T |
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| Q |
218 |
acataagcttttgaagcacgtgaatcat--tagtaacttt |
255 |
Q |
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| T |
28463700 |
gcataaactttttaagcaggtgaatcatagtagtaacttt |
28463739 |
T |
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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 21994377 - 21994451
Alignment:
| Q |
347 |
gtcatttcccatatcacattttggaacaatttcctctccatcaaaccgaagttcactaatgatgtttgcaacatc |
421 |
Q |
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| T |
21994377 |
gtcatttcccatatcagattctagaacaatttcttgttcatcaaactgaagtttactcatgatgtttgtaacatc |
21994451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 18215884 - 18215958
Alignment:
| Q |
347 |
gtcatttcccatatcacattttggaacaatttcctctccatcaaaccgaagttcactaatgatgtttgcaacatc |
421 |
Q |
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| T |
18215884 |
gtcatttcccatatcagattctagaacaatttcttgttcatcaaactgaagtttactcatgatgtttgtaacatc |
18215958 |
T |
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Target: scaffold0335 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0335
Description:
Target: scaffold0335; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 421
Target Start/End: Original strand, 19178 - 19252
Alignment:
| Q |
347 |
gtcatttcccatatcacattttggaacaatttcctctccatcaaaccgaagttcactaatgatgtttgcaacatc |
421 |
Q |
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| T |
19178 |
gtcatttcccatatcagattctagaacaatttcttgttcatcaaactggagtttactcatgatgtttgtaacatc |
19252 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 87
Target Start/End: Complemental strand, 27782198 - 27782154
Alignment:
| Q |
43 |
ggagcatccagttattcataacataacattacatactaatttgca |
87 |
Q |
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| T |
27782198 |
ggagcatccaatcattcataacataacattgcataccaatttgca |
27782154 |
T |
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