View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16153_high_5 (Length: 352)

Name: NF16153_high_5
Description: NF16153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16153_high_5
NF16153_high_5
[»] chr1 (2 HSPs)
chr1 (1-299)||(52878732-52879033)
chr1 (298-334)||(50358441-50358477)
[»] chr3 (2 HSPs)
chr3 (299-334)||(19340579-19340614)
chr3 (298-334)||(9735070-9735106)
[»] chr4 (2 HSPs)
chr4 (300-334)||(49863179-49863213)
chr4 (291-334)||(55957249-55957292)
[»] chr6 (2 HSPs)
chr6 (298-334)||(11430838-11430874)
chr6 (298-334)||(20528236-20528272)
[»] chr5 (2 HSPs)
chr5 (299-334)||(27625523-27625558)
chr5 (300-334)||(7981479-7981513)
[»] chr8 (1 HSPs)
chr8 (300-334)||(3887673-3887707)
[»] chr2 (1 HSPs)
chr2 (300-334)||(19315463-19315497)
[»] chr7 (1 HSPs)
chr7 (301-334)||(47241488-47241521)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 52878732 - 52879033
Alignment:
Q  1 tcacatccattgcttccattttttagttatttggtctcggtctacttccccttctatttgcttgtattctcggatctctaacacaattttcttcctcgtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52878732 tcacatccattgcttccattttttagttatttggtctcggtctacttccccttctatttgcttgtattctcggatctctaacacaattttcttcctcgtt 52878831  T
Q  101 acaattttttagttatttagttatttgtttgtgatcaacatggatcacatatattt---aacaagttggaaagatatttaattatttttgaacttgctag 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||||    
T  52878832 acaattttttagttatttagttatttgtttgtgatcaacatggatcacatatatttaacaacaagttggaaatatatttaattatttttgaacttgctag 52878931  T
Q  198 cttgttgtcgtttggattgatattcttgcatgagcatgatgattacatgtgataaaatatctttttaatattttttggatcattacacatgtcttatttg 297  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52878932 cttgttgtcgtttggattgatattcttgcataagcatgatgattacatgtgataaaatatctttttaatattttttggatcattacacatgtcttatttg 52879031  T
Q  298 aa 299  Q
    ||    
T  52879032 aa 52879033  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 50358477 - 50358441
Alignment:
Q  298 aagagtgcttatacatagacatacataggtggcatac 334  Q
    ||||||||||||||||||||| |||||||||||||||    
T  50358477 aagagtgcttatacatagacacacataggtggcatac 50358441  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 299 - 334
Target Start/End: Complemental strand, 19340614 - 19340579
Alignment:
Q  299 agagtgcttatacatagacatacataggtggcatac 334  Q
    ||||||||||||||||||||||||||||||||||||    
T  19340614 agagtgcttatacatagacatacataggtggcatac 19340579  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 9735106 - 9735070
Alignment:
Q  298 aagagtgcttatacatagacatacataggtggcatac 334  Q
    ||||||||||||||||||||| |||||||||||||||    
T  9735106 aagagtgcttatacatagacacacataggtggcatac 9735070  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 300 - 334
Target Start/End: Complemental strand, 49863213 - 49863179
Alignment:
Q  300 gagtgcttatacatagacatacataggtggcatac 334  Q
    |||||||||||||||||||||||||||||||||||    
T  49863213 gagtgcttatacatagacatacataggtggcatac 49863179  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 334
Target Start/End: Original strand, 55957249 - 55957292
Alignment:
Q  291 ttatttgaagagtgcttatacatagacatacataggtggcatac 334  Q
    |||||| | ||||||||||||||||||| |||||||||||||||    
T  55957249 ttattttatgagtgcttatacatagacacacataggtggcatac 55957292  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 334
Target Start/End: Original strand, 11430838 - 11430874
Alignment:
Q  298 aagagtgcttatacatagacatacataggtggcatac 334  Q
    ||||||||||||||||||||| |||||||||||||||    
T  11430838 aagagtgcttatacatagacacacataggtggcatac 11430874  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 334
Target Start/End: Complemental strand, 20528272 - 20528236
Alignment:
Q  298 aagagtgcttatacatagacatacataggtggcatac 334  Q
    ||||||| ||||||||||||| |||||||||||||||    
T  20528272 aagagtgtttatacatagacacacataggtggcatac 20528236  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 334
Target Start/End: Original strand, 27625523 - 27625558
Alignment:
Q  299 agagtgcttatacatagacatacataggtggcatac 334  Q
    |||||||||||||||||||| |||||||||||||||    
T  27625523 agagtgcttatacatagacacacataggtggcatac 27625558  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 334
Target Start/End: Original strand, 7981479 - 7981513
Alignment:
Q  300 gagtgcttatacatagacatacataggtggcatac 334  Q
    ||||||||||||||||||| |||||||||||||||    
T  7981479 gagtgcttatacatagacacacataggtggcatac 7981513  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 334
Target Start/End: Original strand, 3887673 - 3887707
Alignment:
Q  300 gagtgcttatacatagacatacataggtggcatac 334  Q
    ||||||||||||||||||| |||||||||||||||    
T  3887673 gagtgcttatacatagacacacataggtggcatac 3887707  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 334
Target Start/End: Complemental strand, 19315497 - 19315463
Alignment:
Q  300 gagtgcttatacatagacatacataggtggcatac 334  Q
    ||||||||||||||||||||||||||||| |||||    
T  19315497 gagtgcttatacatagacatacataggtgacatac 19315463  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 334
Target Start/End: Complemental strand, 47241521 - 47241488
Alignment:
Q  301 agtgcttatacatagacatacataggtggcatac 334  Q
    |||||||||||||||||| |||||||||||||||    
T  47241521 agtgcttatacatagacacacataggtggcatac 47241488  T

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