View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16153_high_6 (Length: 345)
Name: NF16153_high_6
Description: NF16153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16153_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 4 - 327
Target Start/End: Original strand, 11585495 - 11585826
Alignment:
| Q |
4 |
aacaggtccgacaaggctattgacacccctctccaacacccaaaagaaacctatcggctaaagcatatagtaggcttcacttcacacttataggagaaga |
103 |
Q |
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| T |
11585495 |
aacaggtccgacaaggccatcgacacccctctccaacacccaaaagaaacctatcggctaaagcacatagtaggcttcatttcacacttataggagaagc |
11585594 |
T |
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| Q |
104 |
atatgctactagggttcttactcaagaataatttccaaaaagtgaatttcaccatttccaccatatacttgaaagatggtatcccccgacaaagnnnnnn |
203 |
Q |
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| T |
11585595 |
atatgctactagggttcttactcaagaataatttccaaaaagtgaatttcaccatttccatcatatacttgaaagatggtatccctcgacaaag-aaaaa |
11585693 |
T |
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| Q |
204 |
ntcat---------taacctaaccctccaaccaacacccaacccttgaaaactatcaaaatatagtacaacacaagaagggtataaccaagccgcatata |
294 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
11585694 |
atcatttcaagagctaacctaaccctccaaccaacacccaacccttgaaaactatcaaaatgtagtacaacacaagaagggtataaccaagccgcatata |
11585793 |
T |
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| Q |
295 |
gacggtatcaatgacatacttccaagtgtgatc |
327 |
Q |
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| T |
11585794 |
ggcggtatcaatgacatacttccaagtgtgatc |
11585826 |
T |
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