View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16153_low_1 (Length: 523)

Name: NF16153_low_1
Description: NF16153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16153_low_1
NF16153_low_1
[»] chr1 (3 HSPs)
chr1 (297-511)||(32971969-32972183)
chr1 (91-254)||(32971809-32971973)
chr1 (21-54)||(32971739-32971772)
[»] scaffold0989 (2 HSPs)
scaffold0989 (305-418)||(701-814)
scaffold0989 (223-308)||(946-1032)
[»] chr7 (1 HSPs)
chr7 (322-419)||(18008461-18008558)
[»] chr4 (1 HSPs)
chr4 (232-290)||(3640577-3640635)
[»] chr3 (1 HSPs)
chr3 (232-308)||(12074490-12074567)
[»] chr2 (1 HSPs)
chr2 (333-383)||(23380446-23380496)


Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 297 - 511
Target Start/End: Original strand, 32971969 - 32972183
Alignment:
Q  297 cttcttggagcattggacaaagataagtttgagaaaatttcaaatgcaacatccaccaaggaggcatgggagaaacttcaaacctcttgcaaaaaagaaa 396  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  32971969 cttcttggagcattggacaaagataaatttgagaaaatttcaaatgcaacatccgccaaggaggcatgggagaaacttcaaacctcttgcaaaaaagaaa 32972068  T
Q  397 acaacgtaaataatgtacgtctttgaataattgtctagtgttgttgctattgttagtagatgtgagaattatggagaaaatattgccctggttggatatc 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  32972069 acaacgtaaataatgtacgtctttgaataattgtctagtgttgttgctattgttagtagatgtgagaattatggagaaaatattcccctggttggatatc 32972168  T
Q  497 aattttgagaatatt 511  Q
    |||||||||||||||    
T  32972169 aattttgagaatatt 32972183  T

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Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 91 - 254
Target Start/End: Original strand, 32971809 - 32971973
Alignment:
Q  91 tataaagtattttgtcaaata-tatctcctcctaaattcctctcaaaatctcactaataaccttcttatttctcaacaatgtggcatcacaaaataggtt 189  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32971809 tataaagtattttgtcaaatactatctcctcctaaattcctctcaaaatctcactaataaccttcttatttctcaacaatgtggcatcacaacataggtt 32971908  T
Q  190 caaataagaaatcctttcgtagtcatgtcgattaatggatctgcatccttccaaggtccacttct 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  32971909 caaataagaaatcctttcgtagtcatgtcgattaatggatctgcatccttccaagttccacttct 32971973  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 54
Target Start/End: Original strand, 32971739 - 32971772
Alignment:
Q  21 aagcttatcattcgtaaactagacaagtaaaagg 54  Q
    ||||||||||||||||||||||||||||||||||    
T  32971739 aagcttatcattcgtaaactagacaagtaaaagg 32971772  T

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Target: scaffold0989 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 305 - 418
Target Start/End: Complemental strand, 814 - 701
Alignment:
Q  305 agcattggacaaagataagtttgagaaaatttcaaatgcaacatccaccaaggaggcatgggagaaacttcaaacctcttgcaaaaaagaaaacaacgta 404  Q
    |||||||||  ||||| |||| |||||||||||||||||||||||| | ||||||||||||||||| ||| ||||||||||| ||  |||| |||| |||    
T  814 agcattggatgaagatgagttcgagaaaatttcaaatgcaacatccgctaaggaggcatgggagaagcttaaaacctcttgccaaggagaagacaaggta 715  T
Q  405 aataatgtacgtct 418  Q
    || || ||||||||    
T  714 aagaaggtacgtct 701  T

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Target: scaffold0989; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 223 - 308
Target Start/End: Complemental strand, 1032 - 946
Alignment:
Q  223 aatggatctgcatccttccaaggtccacttctaaaatggagtacttatgataattgacgtatcaaaatga-agctcttcttggagca 308  Q
    |||||| | ||||||||||||| ||||||||| ||| ||||||| |||||||||||    ||||||||||  |||||||||||||||    
T  1032 aatggagcggcatccttccaagttccacttctcaaagggagtacctatgataattgcttcatcaaaatgatggctcttcttggagca 946  T

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Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 322 - 419
Target Start/End: Complemental strand, 18008558 - 18008461
Alignment:
Q  322 agtttgagaaaatttcaaatgcaacatccaccaaggaggcatgggagaaacttcaaacctcttgcaaaaaagaaaacaacgtaaataatgtacgtctt 419  Q
    ||||||||||||||| ||||||||||||| | || ||||||||| |||| ||||||||||||||||||  |||| |||| ||||| ||||||||||||    
T  18008558 agtttgagaaaattttaaatgcaacatccgcgaacgaggcatggaagaagcttcaaacctcttgcaaaggagaagacaaagtaaagaatgtacgtctt 18008461  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 3640577 - 3640635
Alignment:
Q  232 gcatccttccaaggtccacttctaaaatggagtacttatgataattgacgtatcaaaat 290  Q
    |||||||| |||| |||||||||||||| ||||||||||||||||||  ||||||||||    
T  3640577 gcatcctttcaagttccacttctaaaatcgagtacttatgataattggtgtatcaaaat 3640635  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 232 - 308
Target Start/End: Original strand, 12074490 - 12074567
Alignment:
Q  232 gcatccttccaaggtccacttctaaaatggagtacttatgataattgacgtatcaaaatga-agctcttcttggagca 308  Q
    ||||||||| ||| ||||||||| ||| ||||||| |||||||||||  | ||||||||||  |||||||||||||||    
T  12074490 gcatccttctaagttccacttctcaaagggagtacctatgataattggtgcatcaaaatgatggctcttcttggagca 12074567  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 333 - 383
Target Start/End: Complemental strand, 23380496 - 23380446
Alignment:
Q  333 atttcaaatgcaacatccaccaaggaggcatgggagaaacttcaaacctct 383  Q
    ||||| |||| ||||||||| ||||||||||||||||| |||| |||||||    
T  23380496 atttccaatgtaacatccactaaggaggcatgggagaagcttctaacctct 23380446  T

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