View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16153_low_3 (Length: 426)
Name: NF16153_low_3
Description: NF16153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16153_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 14 - 410
Target Start/End: Original strand, 10416822 - 10417218
Alignment:
| Q |
14 |
aggtaaaggaattattattacaaattaaacaatggtatttggttgcaaaggcagaagcagtttatcaataattatgatgacctttatttgattaagtaga |
113 |
Q |
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| T |
10416822 |
aggtaaaggaattattattacaaattaaacaatggtatttggttgcaaaggaagaagcagtttatcaataattatgatgacctttatttgattaagtaga |
10416921 |
T |
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| Q |
114 |
tttggtagaaggctaacttaaaccattaattagtcaacctttcattcnnnnnnnnnnnnggtgtaaagtcaaacctctaatccatttttattttgaatgg |
213 |
Q |
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| T |
10416922 |
tttggtagaaggctaacttaaaccattaattagtcaacctttcattcttttttatttttggtgtaaagtcaaacttctaatacatttttattttgaatgg |
10417021 |
T |
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| Q |
214 |
aacctttcaatcatgaggtaagattaagagggtaaaaattatcataaaattatgatagttcaaactttacatgcattattagagtagtattaattatgct |
313 |
Q |
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| T |
10417022 |
aacctttcattcatgaggtaagattaagagggtaaaaattatcataaaattatgatagttcaaactttacatgcattattagagtagtattaattatgcc |
10417121 |
T |
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| Q |
314 |
tctgtccctcgagctatttttaggtgcattcaaactctgcatttgagcttatatactggtttaagtacttgcaaaactgtttttagcttatggaaac |
410 |
Q |
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| T |
10417122 |
tctgtccctcgagctatttttaggtgcattcagactctgcatttgagcttatatactggtttaagtacttgcaaaactgtttttagcttatggaaac |
10417218 |
T |
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