View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16153_low_5 (Length: 375)

Name: NF16153_low_5
Description: NF16153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16153_low_5
NF16153_low_5
[»] chr1 (1 HSPs)
chr1 (121-170)||(27503973-27504022)
[»] chr8 (1 HSPs)
chr8 (123-173)||(41543992-41544042)
[»] chr4 (2 HSPs)
chr4 (147-199)||(10307465-10307517)
chr4 (157-209)||(47576257-47576309)
[»] chr2 (1 HSPs)
chr2 (126-169)||(2567983-2568026)


Alignment Details
Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 121 - 170
Target Start/End: Complemental strand, 27504022 - 27503973
Alignment:
Q  121 atactttttaattgtatatttaggagaaaaaggtagccttgagattcaaa 170  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  27504022 atactttttaattgcatacttaggagaaaaaggtagccttgagattcaaa 27503973  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 173
Target Start/End: Original strand, 41543992 - 41544042
Alignment:
Q  123 actttttaattgtatatttaggagaaaaaggtagccttgagattcaaaagt 173  Q
    |||||||||||||||| ||||||||||||| ||||||| ||||||| ||||    
T  41543992 actttttaattgtatacttaggagaaaaagatagccttaagattcacaagt 41544042  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 10307517 - 10307465
Alignment:
Q  147 aaaaaggtagccttgagattcaaaagttcatgtgagatcaatatttttcttac 199  Q
    ||||| ||||||||||||||||||||||| || |||||| |||||||| ||||    
T  10307517 aaaaaagtagccttgagattcaaaagttcttgcgagatcgatatttttattac 10307465  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 47576257 - 47576309
Alignment:
Q  157 ccttgagattcaaaagttcatgtgagatcaatatttttcttacaacgataaaa 209  Q
    |||||||||||| |||||| |||||||||||||||||| |||| ||| |||||    
T  47576257 ccttgagattcataagttcttgtgagatcaatattttttttacgacggtaaaa 47576309  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 2567983 - 2568026
Alignment:
Q  126 ttttaattgtatatttaggagaaaaaggtagccttgagattcaa 169  Q
    ||||||||| ||||||||||||||||| ||||||||||| ||||    
T  2567983 ttttaattgcatatttaggagaaaaagatagccttgagactcaa 2568026  T

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