View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16153_low_8 (Length: 326)

Name: NF16153_low_8
Description: NF16153
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16153_low_8
NF16153_low_8
[»] chr1 (1 HSPs)
chr1 (12-308)||(34816274-34816570)


Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 308
Target Start/End: Original strand, 34816274 - 34816570
Alignment:
Q  12 atgaatgggttgggttggcacactaagattcttgaatatagtggttggaagtagttatcttcattcaagaattgtcctctaactcttataaaatccggaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34816274 atgaatgggttgggttggcacactaagattcttgaatatagtggttggaagtagttatcttcattcaagaattgtcctctaactcttataaaatccggaa 34816373  T
Q  112 aaatctatattctattaacatcatctaagagatcgagcaacatatatattgggatgttttggatcaccaattgctgtccaaattaaacaacatatattta 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34816374 aaatctatattctattaacatcatctaagagatcgagcaacatatatattgggatgttttggatcaccaattgctgtccaaattaaacaacatatattta 34816473  T
Q  212 cgctgggaatatcctctatcagggttgcaccttagtttgcatgttcttttagttgcatccgtagtacatgtttatgtggtttttgtttcattattgt 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34816474 cgctgggaatatcctctatcagggttgcaccttagtttgcatgttcttttagttgcatccgtagtacatgtttatgtggtttttgtttcattattgt 34816570  T

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