View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16154_high_11 (Length: 360)
Name: NF16154_high_11
Description: NF16154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16154_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 349
Target Start/End: Original strand, 11119355 - 11119693
Alignment:
| Q |
11 |
catcagcaacaataataacaccatcaacatcatattcattctcattgttagggtcaagttggggttctgaaatgacattattaaatccatcatcaaacct |
110 |
Q |
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| T |
11119355 |
catcaacaacaataataacaccatcaacatcatcttcattctcattgttagggtcaagttggggttctgaaatgacattattaaatccatcatcaaacct |
11119454 |
T |
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| Q |
111 |
atcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtct |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11119455 |
atcatcaaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcgttgtct |
11119554 |
T |
|
| Q |
211 |
gcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaattcacct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||| |
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| T |
11119555 |
gcttcaccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataaaatcagcaacatttataccatttcctaaattcacct |
11119654 |
T |
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| Q |
311 |
taggttcaacatacaattcaacatcacacttcttctcac |
349 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
11119655 |
taggttcaacatacaattcaacatcacacttcttatcac |
11119693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 117 - 322
Target Start/End: Original strand, 12205970 - 12206175
Alignment:
| Q |
117 |
aaccccagccatcctctcttcttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtctgcttca |
216 |
Q |
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| T |
12205970 |
aaccccagccatcctctcttcttcactatcattaaagtgtgcgcctttaattgaatcaccatcatcactactaacatcttcatcatcactgtctgcttca |
12206069 |
T |
|
| Q |
217 |
ccaacattgccttcaacttcatccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaattcaccttaggtt |
316 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12206070 |
ccaacattgccttcaacttaatccgccactacaccctttccctttcgttccccgataacatcagcaacatttatagcatttcctaaattcaccttaggtt |
12206169 |
T |
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| Q |
317 |
caacat |
322 |
Q |
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|||||| |
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| T |
12206170 |
caacat |
12206175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 175; Significance: 4e-94; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 38 - 341
Target Start/End: Original strand, 32741098 - 32741389
Alignment:
| Q |
38 |
catcatattcattctcattgttagggtcaagttggggttctgaaatgacattattaaatccatcatcaaacctatcatcaaccccagccatcctctcttc |
137 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |||||||| ||||||| |
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| T |
32741098 |
catcatcttcattagcattgttagggtcaagttggggttctgaaatgacattat------------caaacccatcatcaaccgcagccatcttctcttc |
32741185 |
T |
|
| Q |
138 |
ttcactgtcattaaagtgtgtgcctttgattgaatcaccatcatcactactaacatctccatcatcattgtctgcttcaccaacattgccttcaacttca |
237 |
Q |
| |
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|||||| |||| |||| |||||||||| ||| ||||||||||||||||||||||||||||| |||| ||||| |||||||||||| |||||||| |||| |
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| T |
32741186 |
ttcactatcatcaaagcgtgtgcctttaattaaatcaccatcatcactactaacatctccaccatcgatgtctacttcaccaacatcgccttcaatttca |
32741285 |
T |
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| Q |
238 |
tccgccactacaccctttccctttcgttccccgataacatcaacaacatttatagcatttcctaaattcaccttaggttcaacatacaattcaacatcac |
337 |
Q |
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|||||||||||||||||||||||| ||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32741286 |
tccgccactacaccctttcccttttgttccccaataacatcagcaacaattatagcatttcctaaattcaccttaggttcaacatacaattcaacatcgc |
32741385 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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