View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16154_high_3 (Length: 489)
Name: NF16154_high_3
Description: NF16154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16154_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 12)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 5 - 333
Target Start/End: Original strand, 1043275 - 1043603
Alignment:
| Q |
5 |
ggtagattattctgtcagatttggcatgttggaagagtttcaaattcaggtatatcatgtttatttcatcatatcattatttattatgaaaataaaagtt |
104 |
Q |
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| T |
1043275 |
ggtatatttttctgtcagatttggcatgttggaagagtttcaaattcaggtatatcatgtttatttcatcatatcattatttattatgaaaataaaagtt |
1043374 |
T |
|
| Q |
105 |
ggagtgagcggaaggtctaactatcagtgtcaacctcaattggctaagatcatcaatttttaacatagacctagcataattttagcattacctagctcaa |
204 |
Q |
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||||||||| ||||||||||| |||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1043375 |
ggagtgagctgaaggtctaaccatcaatgtcaacccaaattggttaagatcatcaatttttaacatagacctagcataattttagcattacctagctcaa |
1043474 |
T |
|
| Q |
205 |
atataacatgatttttaagcatcaatcaaataactaaggtctaccatcattgccagtaaaccgaagatgatttgggtttgaggttgttattattaagaat |
304 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1043475 |
atataacatgatttttaagcatcaatcaaataacttaggtctaccatcattgacagtaaaccgaagatgatttgggtttgaggttgttattattgagaat |
1043574 |
T |
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| Q |
305 |
tactatcaaggtgtaaccactttctaatg |
333 |
Q |
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| T |
1043575 |
tactatcaaggtgtaaccactttctaatg |
1043603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 335 - 472
Target Start/End: Original strand, 1043661 - 1043798
Alignment:
| Q |
335 |
tttttccttgtgaatcgaatagtttatcagccaaatggacaagcaccgatatcttctacggacaagtcactcacaagcaatgatgtacaacaattcacga |
434 |
Q |
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| T |
1043661 |
tttttccttgtgaatcgaatagtttatcagccaaatggacaagcaccgatatcttctacggacaagtcactcacaagcaatgatgtacaacaattcacga |
1043760 |
T |
|
| Q |
435 |
aaccgagacggctaagcacagatgaaattcctcatatt |
472 |
Q |
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| T |
1043761 |
aaccgagacggctaagcacagatgaaattcctcatatt |
1043798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 5 - 214
Target Start/End: Original strand, 1049369 - 1049569
Alignment:
| Q |
5 |
ggtagattattctgtcagatttggcatgttggaagagtttcaaattcaggtatatcatgtttatttcatcatatcattatttattatgaaaataaaagtt |
104 |
Q |
| |
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|||| ||| |||||||| |||||||||| |||||| ||||||||||||||||| | | |||||| |||||||||||||||||||| ||||||| || |
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| T |
1049369 |
ggtatatttttctgtcaaatttggcatgctggaagggtttcaaattcaggtatgta---tctatttcgtcatatcattatttattatgtaaataaatgt- |
1049464 |
T |
|
| Q |
105 |
ggagtgagcggaaggtctaactatcagtgtcaacctcaattggctaagatcatcaatttttaacatagacctagcataattttagcattacctagctcaa |
204 |
Q |
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|| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1049465 |
-----gaccggaaggtctaaccatctgtgtcaacctcaattggctaagatcatcaatttttaacatagacctagcataattttagcattacctagctcaa |
1049559 |
T |
|
| Q |
205 |
atataacatg |
214 |
Q |
| |
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|||||||||| |
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|
| T |
1049560 |
atataacatg |
1049569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 338 - 440
Target Start/End: Original strand, 1049928 - 1050030
Alignment:
| Q |
338 |
ttccttgtgaatcgaatagtttatcagccaaatggacaagcaccgatatcttctacggacaagtcactcacaagcaatgatgtacaacaattcacgaaac |
437 |
Q |
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|||||||| || | || |||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1049928 |
ttccttgttaacccaacagtttatcagccgaatggacaagcaccgatatcttctacaaacaagtcactcacaagcgatgatgtacaacaattcacgaaac |
1050027 |
T |
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| Q |
438 |
cga |
440 |
Q |
| |
|
||| |
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|
| T |
1050028 |
cga |
1050030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 368 - 472
Target Start/End: Original strand, 1033302 - 1033406
Alignment:
| Q |
368 |
aatggacaagcaccgatatcttctacggacaagtcactcacaagcaatgatgtacaacaattcacgaaaccgagacggctaagcacagatgaaattcctc |
467 |
Q |
| |
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|||||||||| ||||||||||||||| ||||||||||| |||||||||||| | || ||||| | ||||||| ||||||| ||||||||||||||| |
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| T |
1033302 |
aatggacaagaaccgatatcttctacagacaagtcactgacaagcaatgattttgaaaaattctcaccaccgagaaggctaaggacagatgaaattccta |
1033401 |
T |
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| Q |
468 |
atatt |
472 |
Q |
| |
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||||| |
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| T |
1033402 |
atatt |
1033406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 53
Target Start/End: Original strand, 1049579 - 1049627
Alignment:
| Q |
5 |
ggtagattattctgtcagatttggcatgttggaagagtttcaaattcag |
53 |
Q |
| |
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|||| ||| |||||||| ||||||||||||||||||||||||||||||| |
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| T |
1049579 |
ggtatatttttctgtcaaatttggcatgttggaagagtttcaaattcag |
1049627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 409
Target Start/End: Original strand, 1065269 - 1065323
Alignment:
| Q |
355 |
agtttatcagccaaatggacaagcaccgatatcttctacggacaagtcactcaca |
409 |
Q |
| |
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||||| ||||||||||||||| ||||| ||||| ||||| ||||||||||||||| |
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| T |
1065269 |
agtttttcagccaaatggacaggcaccaatatcatctacagacaagtcactcaca |
1065323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 1071008 - 1071058
Alignment:
| Q |
355 |
agtttatcagccaaatggacaagcaccgatatcttctacggacaagtcact |
405 |
Q |
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|||||||||||||||||| |||||||| ||||||||||| |||||| |||| |
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| T |
1071008 |
agtttatcagccaaatgggcaagcaccaatatcttctacagacaagccact |
1071058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 1032876 - 1032913
Alignment:
| Q |
14 |
ttctgtcagatttggcatgttggaagagtttcaaattc |
51 |
Q |
| |
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| T |
1032876 |
ttctgtcagatttggcatgttggaagagtttctaattc |
1032913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 1052199 - 1052236
Alignment:
| Q |
14 |
ttctgtcagatttggcatgttggaagagtttcaaattc |
51 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| |
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| T |
1052199 |
ttctgtcagatttggcatgttggaagagtttctaattc |
1052236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 399
Target Start/End: Original strand, 1046209 - 1046253
Alignment:
| Q |
355 |
agtttatcagccaaatggacaagcaccgatatcttctacggacaa |
399 |
Q |
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||||||||| ||||||||||||||||| ||||||||||| ||||| |
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| T |
1046209 |
agtttatcaaccaaatggacaagcaccaatatcttctacagacaa |
1046253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 57
Target Start/End: Original strand, 1065046 - 1065086
Alignment:
| Q |
17 |
tgtcagatttggcatgttggaagagtttcaaattcaggtat |
57 |
Q |
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|
| T |
1065046 |
tgtcagatttggcatgttggaagagtttctgattcaggtat |
1065086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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