View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16154_high_4 (Length: 487)
Name: NF16154_high_4
Description: NF16154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16154_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 477
Target Start/End: Original strand, 52835974 - 52836438
Alignment:
| Q |
18 |
gtaacagaactatgtgttcaaaatgaatttgaactaatggtgtattagaagtcgtgcctacggttagaagatttgtttctttcctgaatttcatgaagaa |
117 |
Q |
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| T |
52835974 |
gtaacagaactatgtgttcaaaatgaatttgaactaatggtgtattagaagtcgtgcctacggttagaagatttgtttctttcctgaatttcatgaaaaa |
52836073 |
T |
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| Q |
118 |
gaataaattaaaatgtaaagtttttctttgtagatggagaggattcaattatcgttacaagcctctggactctctccaaattgaatgggaacgacatgac |
217 |
Q |
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| T |
52836074 |
gaataaattaaaatgtaaagtttttctttgtagatggagaggattcaattatcgttgcaagcctctggactctctccaaattgaacgggaacgacatgac |
52836173 |
T |
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| Q |
218 |
aaggtatttagtgtgatgaggaagtgcatcttttgtattttgtgttagtatggtgccaatgtataaaaaggaagtgtattcattattgctgccttttcag |
317 |
Q |
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| T |
52836174 |
aaggtatttagtgtgatgaggaagtccatcttttgtattttgtgttagtatggtgcc-atgtataaaaaggaagtgtattcattattgctgccttttcag |
52836272 |
T |
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| Q |
318 |
gaaagaacattggaagaacacaaaaagttggctgacagggttatgaaacgtgacaaaaa------acattgatagaggctgctggcattgattatgaatg |
411 |
Q |
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| T |
52836273 |
gaaagaacattggaagaacacaaaaagttggttgacagggttatgaaacgtgacaaaaaagtcggaaaatgatagaggctgctggcattgattatgaatg |
52836372 |
T |
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| Q |
412 |
tccccagattgtgagcttttttgcctttcttttactgattagttgttttcattgtccatgtctctg |
477 |
Q |
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| T |
52836373 |
tccccagattgtgagctttttagcctttcttttactgattagttgttttcattgtccatgtctctg |
52836438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 130; Significance: 4e-67; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 88 - 470
Target Start/End: Complemental strand, 48967904 - 48967517
Alignment:
| Q |
88 |
atttgtttctttcctgaatttcatgaagaagaataaattaaaatgtaaagtttttctttgtagatggagaggattcaattatcgttacaagcctctggac |
187 |
Q |
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| T |
48967904 |
atttgtttcttttcttaacataatcaagaaaaataaattaaaaggtgggatttttctttgtagatggaaaggattcaattaccgctacaagcccttggac |
48967805 |
T |
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| Q |
188 |
tctctccaaattgaatgggaacgacatgacaaggtatttagtgtgatgaggaagtgcatcttttgtattttgtgttagtatggtgccaatgtataaaaag |
287 |
Q |
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| T |
48967804 |
acactccaaattgaacgagagctacatgacaaggtatctagtgtgatgaggaagtatatcatttgtatttagt--tactctggtgctc-tgtataaaaag |
48967708 |
T |
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| Q |
288 |
gaagtgtattcattattgctgccttttcaggaaagaacattggaagaacacaaaaagttggctgacagggttatgaaacgtgacaaaaaac-------at |
380 |
Q |
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| T |
48967707 |
aaaatgtactaattattgttattatttcaggaaagaacattggaagaacacaaaaagttggttgatagagttatgaagcgtgacaaaaaacgacgtaaaa |
48967608 |
T |
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| Q |
381 |
tgatagaggctgctggcattgattatgaatgtccccagattgtgagctttttt-gcctttcttttactgattagttgttttcattgtccat |
470 |
Q |
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| T |
48967607 |
agatagaggctgctggcattgattatgaatgtcctgagattgtgagcttttttcgcctttctttgactgattagttgttttgatagtccat |
48967517 |
T |
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