View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16154_high_6 (Length: 464)
Name: NF16154_high_6
Description: NF16154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16154_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 12118641 - 12119103
Alignment:
| Q |
1 |
atctccataactagaatgacgtttggaaatctcaacatctttatcgagtcgttggtgagtttgatgggcttaacttgtcttgatttatcatatttgttta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||| |
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| T |
12118641 |
atctccataactagaatgacgtttggaaatctcaacatctttattgagtcgttggtgaatttgacgggcttaacttctcttgatttatcatattcgttta |
12118740 |
T |
|
| Q |
101 |
tcccagatgaattgctttcatctgttgcagagaaaggtcttcctattaggaaactcttcctccaaggatgctttggctatacttatgttggaatctttaa |
200 |
Q |
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||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| |
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| T |
12118741 |
tcccagatgaattgctttcatatgttgcagagaaagctcttcctattaggaaactcttcctccagggatactttggctatacttattttggaatctttaa |
12118840 |
T |
|
| Q |
201 |
cttattgtctaagtgtcaatttattcaatatttggatcttcaaaatgctaagtttatgaatgattggcatgtcattgagctgtctttgtttcttggtgat |
300 |
Q |
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| T |
12118841 |
cttattgtcaaagtgtcaatttattcaatatttggatcttcaaaatgctaagtttatgaatgattggaatgtcattgagttgtctttgtttcttggtgat |
12118940 |
T |
|
| Q |
301 |
ttgatgtatataaaaattagtatatgtgatag-cctcacaaacttagcgttgcttgcactccttaagaactctgctaaactaagtcacgtccaaatggat |
399 |
Q |
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||| ||| |||||| ||||||| ||||||||| ||||||||| ||| | ||| || | ||||||||||||| ||||||||||||| ||||| ||||||| |
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| T |
12118941 |
ttgttgtctataaacattagtaaatgtgatagccctcacaaatttatccttgttttctctccttaagaactgtgctaaactaagtgacgtcaaaatggaa |
12119040 |
T |
|
| Q |
400 |
taagcagctattgggtagatgagcgaagagctttcgaacatcttgatggattttgatgtatac |
462 |
Q |
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| T |
12119041 |
tacacaactattgggaagatgagcatagagaattcgtataccttgaaggattttgatgtatac |
12119103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 464
Target Start/End: Original strand, 1527537 - 1527997
Alignment:
| Q |
1 |
atctccataactagaatgacgtttggaaatctcaacatctttatcgagtcgttggtgagtttgatgggcttaacttgtcttgatttatcatatttgttta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1527537 |
atctccataactagaatgacgtttggaaatctcaacatttttattcagtcgttggtgaatttgatgggcttaacttgtcttgatttatcatattcgttta |
1527636 |
T |
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| Q |
101 |
tcccagatgaattgctttcatctgttgcagagaaaggtcttcctattaggaaactcttcctccaaggatgctttggctatacttatgttggaatctttaa |
200 |
Q |
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| T |
1527637 |
tcccagatgaattgctttcatctgttgcagagaaaggtcttccgattaggaaactcttcctccaaggatgctttg---atacttatgttggaatctttaa |
1527733 |
T |
|
| Q |
201 |
cttattgtctaagtgtcaatttattcaatatttggatcttcaaaatgctaagtttatgaatgattggcatgtcattgagctgtctttgtttcttggtgat |
300 |
Q |
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| T |
1527734 |
cttattgtcaaagtgtcaatttattcaatatttggatcttcaaaattccaagtttatgaatgatttgcatgtcattgagttgtcttcgtttcttagtgat |
1527833 |
T |
|
| Q |
301 |
ttgatgtatataaaaattagtatatgtgatagcctcacaaacttagcgttgcttgcactccttaagaactctgctaaactaagtcacgtccaaatggatt |
400 |
Q |
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||| ||| |||||| ||||||| |||||||||||||||| | ||||| ||| |||||||||||||||| | || ||||||||| ||||| ||||||| | |
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| T |
1527834 |
ttgttgtctataaacattagtaaatgtgatagcctcacacatttagccttgtttgcactccttaagaattgtgtgaaactaagtgacgtcaaaatggaat |
1527933 |
T |
|
| Q |
401 |
aagcagctattgggtagatgagcgaagagctttcgaacatcttgatggattttgatgtataccc |
464 |
Q |
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| || |||||||| | ||||||| |||| || | | |||||||||||||||||||||||| |
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|
| T |
1527934 |
acacaactattgggaaaatgagcgtagagaactcttataccttgatggattttgatgtataccc |
1527997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 23 - 380
Target Start/End: Complemental strand, 6007074 - 6006717
Alignment:
| Q |
23 |
ttggaaatctcaacatctttatcgagtcgttggtgagtttgatgggcttaacttgtcttgatttatcatatttgtttatcccagatgaattgctttcatc |
122 |
Q |
| |
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|||| |||| ||| || ||||| || |||||||||| |||| |||||||||||||||||||| || |||| | |||| | ||| |||||||||||| |
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| T |
6007074 |
ttggtaatcacaatatttttattgactcgttggtgaaattgaaaggcttaacttgtcttgatttgtcgtattcatatatctcggatcgattgctttcatc |
6006975 |
T |
|
| Q |
123 |
tgttgcagagaaaggtcttcctattaggaaactcttcctccaaggatgctttggctatacttatgttggaatctttaacttattgtctaagtgtcaattt |
222 |
Q |
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| T |
6006974 |
tattgcagagaaaggttttcctttaaggaagcttgtgcttcaaggttgccttgactattcctatgttggactctataacttgttgtctaattgtcattat |
6006875 |
T |
|
| Q |
223 |
attcaatatttggatcttcaaaatgctaagtttatgaatgattggcatgtcattgagctgtctttgtttcttggtgatttgatgtatataaaaattagta |
322 |
Q |
| |
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||||||||||||||||||||| |||| | ||| ||||||||| || ||| || || ||||| |||||||| ||||||| ||| |||||| ||||||| |
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| T |
6006874 |
tttcaatatttggatcttcaaagtgctgattttctgaatgattcacacgtccttaagttgtctcggtttcttgctgatttggtgtttataaatattagta |
6006775 |
T |
|
| Q |
323 |
tatgtgatagcctcacaaacttagcgttgcttgcactccttaagaactctgctaaact |
380 |
Q |
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|||||||||||||||||| ||||| ||| |||||||||||| ||||| || |||||| |
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| T |
6006774 |
aatgtgatagcctcacaaatttagccttgtttgcactccttaggaactgtgataaact |
6006717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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