View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16154_low_10 (Length: 387)
Name: NF16154_low_10
Description: NF16154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16154_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 13 - 370
Target Start/End: Original strand, 396059 - 396415
Alignment:
| Q |
13 |
aatatcatgtctggatccaccccctggtatgaaaaaccatttgactttctaactattaaccaccagctgtgcagtgttcatttgatatccattatcccaa |
112 |
Q |
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| T |
396059 |
aatatcatgtctggatccaccccatggtatgaaaaagcatttgactttctaactattaaccaccagctgtgcagtgttcatttgatatccatt-tcctaa |
396157 |
T |
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| Q |
113 |
gtattacattactgttgagctttaaagaatctacaatttcaacagagaacactgaagctaaaactctgcagaaattcaagggtctgcgaacctcccaatt |
212 |
Q |
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| T |
396158 |
gtattacattactgttgaactttaaagaatctacaatttcaagagaaaacactgaagctaaaactctgcagaaattcaagggtctgcaaacctcccaatt |
396257 |
T |
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| Q |
213 |
acccaagggccctaattctctcaaacaaccccctttccactataatctattctgcttattttatactcatcacagcctaacctaacaaactaaatgaata |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
396258 |
acccaagggccctaattctctcaaacaaccccctttccactataatctattctgcatattttatactcatcacagcctaacctaacaaactaaatgaata |
396357 |
T |
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| Q |
313 |
gagggtatcctaagctacagggtaaacaaaagctacaattataggagatatatattat |
370 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
396358 |
gagggtatcctaagctacagggtaaacaaaaactacaattataggagatatatattat |
396415 |
T |
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