View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16154_low_14 (Length: 326)
Name: NF16154_low_14
Description: NF16154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16154_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 46 - 253
Target Start/End: Complemental strand, 28276173 - 28275966
Alignment:
| Q |
46 |
aacataagtaaaagaatacgacacatatggagtattacatggcataacataaacataacatttgatttcacaaataaatgcaatgcacattccgcctaac |
145 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
28276173 |
aacataagtaaaagaatacgacacatatggagtattacatggcataacataaacataacatttcatttcacaaataaatgcaatgcacattccgcctaac |
28276074 |
T |
|
| Q |
146 |
aaagcatagtctacattcccaagcttaatttgtcacattcatatgtacaaaagtaaaaatgtatttgcctcaagcctaatacatggctcaagccattcta |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
28276073 |
aaagcatagtctacattcccaagcttaatttgtcacattcatatgtacaaaagtaaaaatgtatttgccccaaccctaatacatggctcaagccattcta |
28275974 |
T |
|
| Q |
246 |
ggagaaag |
253 |
Q |
| |
|
|||||||| |
|
|
| T |
28275973 |
ggagaaag |
28275966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 283 - 326
Target Start/End: Complemental strand, 28275940 - 28275897
Alignment:
| Q |
283 |
agacgtctatgtcatcaaacttttctgagtgtgtatatatatat |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28275940 |
agacgtctatgtcatcaaacttttctgagtgtgtatatatatat |
28275897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University