View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16154_low_15 (Length: 319)
Name: NF16154_low_15
Description: NF16154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16154_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 4298103 - 4298168
Alignment:
| Q |
151 |
tctttttcttgaatagaacaagcaattctcattgtcattataatatgaggctaaaaattaatagtt |
216 |
Q |
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| T |
4298103 |
tctttttcttgaatagaacaagcaatactcattgtcattattatatgaggccaaaaattaatagtt |
4298168 |
T |
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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 151
Target Start/End: Original strand, 4298043 - 4298084
Alignment:
| Q |
110 |
cctaatctcatgccttattaatattcctttgcaaaacatagt |
151 |
Q |
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| T |
4298043 |
cctaatttcatgccttattaatattcctttgcaaaacatagt |
4298084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 63
Target Start/End: Original strand, 4297979 - 4298034
Alignment:
| Q |
8 |
tttgcttttcaagtccaaacaaaggttaacgaaccctcatgcatgtgcttattaat |
63 |
Q |
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| T |
4297979 |
tttgtttttcaagtccaaacaaaggttaacaaactatcatgtatgtgcttattaat |
4298034 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 30696378 - 30696455
Alignment:
| Q |
3 |
aacagtttgcttttcaagtccaaacaaaggttaacgaaccctcatgcatgtgcttattaattaatattagagcctaat |
80 |
Q |
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| T |
30696378 |
aacatttttcttttcaagttcaaacaaaggttaacaaactctcatgtacgtgcttgtaaattaatattagagcctaat |
30696455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 30696504 - 30696581
Alignment:
| Q |
82 |
ttagtggtccatcaatgtgatattggaac-------ctaatctcatgccttattaatattcctttgcaaaacatagtc |
152 |
Q |
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| T |
30696504 |
ttagtggtccatcaatgtgatattggaatttgaaagctaatcgcatgccttattaacattcctttgcaaaacatagtc |
30696581 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 24073262 - 24073212
Alignment:
| Q |
101 |
atattggaacctaatctcatgccttattaatattcctttgcaaaacatagt |
151 |
Q |
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| T |
24073262 |
atattagagcctaatcacatgcctttttaatattccttagcaaaacatagt |
24073212 |
T |
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