View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16154_low_2 (Length: 661)
Name: NF16154_low_2
Description: NF16154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16154_low_2 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 295 - 654
Target Start/End: Complemental strand, 28275827 - 28275467
Alignment:
| Q |
295 |
tactatcagtttgaccaagttaatttagcttcactaatgttaaaaatatgtgcagaccaaaacctaaaaatttgagaagactgaagaataatttaataaa |
394 |
Q |
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| T |
28275827 |
tactatcagtttgaccaagttaatttagcttcactaatgttaaaaatatgtgcagaccaaaacctaaaaaatagagaagactgaagaataatttaataaa |
28275728 |
T |
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| Q |
395 |
tcctagagtatattccttgaatactgtcccttgtgtgtattatcatgattaaattagacagtttgaaactttgtattccttttatactattattacctta |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28275727 |
tcctagagtatattccttgaatactgtcccttgtgtgtattatcatgattaaattagacagtttgaaactttgtattccttttatactattattacctta |
28275628 |
T |
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| Q |
495 |
aggttaatcatgcatatgtctatatgaaaaatcacaaacacacaaaaacatgattttaaacgcgcatgcaagcacgcgggaggttcacatgaat-tttta |
593 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28275627 |
aggttaatcatgcatatgtctatatgaaaaatcacaaacacacaaaaacatgattttaaacgcgcatgcaagcacgcgggaggttcacatgaatttttta |
28275528 |
T |
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| Q |
594 |
tatagatatgagctcaatttcattatgaaattgtcattattaattttgtttagtattatct |
654 |
Q |
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| T |
28275527 |
tatagatatgagctcaattccattatgaaattgtcattattaattttgtttagtataatct |
28275467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 28276069 - 28275966
Alignment:
| Q |
1 |
catagtctacattcccaagcttaatttgtcacattcatatgtacaaaagtaaaaatgtatttgcctcaagcctaatacatggctcaagccattctaggag |
100 |
Q |
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| T |
28276069 |
catagtctacattcccaagcttaatttgtcacattcatatgtacaaaagtaaaaatgtatttgccccaaccctaatacatggctcaagccattctaggag |
28275970 |
T |
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| Q |
101 |
aaag |
104 |
Q |
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|||| |
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| T |
28275969 |
aaag |
28275966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 134 - 247
Target Start/End: Complemental strand, 28275940 - 28275831
Alignment:
| Q |
134 |
agacgtctatgtcatcaaacttttctgagtgtgtatatatatatcgtgtccaaatctgtgtaaccacacacaagacctccttcgatatgtcacctccaaa |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
28275940 |
agacgtctatgtcatcaaacttttctgagtgtgtatatatatatcgtgtccaaatctgtgt----acacagaagacctccttcgatatgtcacctccaaa |
28275845 |
T |
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| Q |
234 |
tttacttaagttcc |
247 |
Q |
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| T |
28275844 |
tttacttaagttcc |
28275831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 531 - 595
Target Start/End: Original strand, 67715 - 67778
Alignment:
| Q |
531 |
aacacacaaaaacatgattttaaacgcgcatgcaagcacgcgggaggttcacatgaatttttata |
595 |
Q |
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| T |
67715 |
aacacacgaaaacatgcttt-aaacgcgcgtgcaagcatgcaggaggttcacttcaatttttata |
67778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 531 - 595
Target Start/End: Complemental strand, 40898569 - 40898506
Alignment:
| Q |
531 |
aacacacaaaaacatgattttaaacgcgcatgcaagcacgcgggaggttcacatgaatttttata |
595 |
Q |
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||||||| |||||||| ||| |||||||| |||||||| || |||||||||| | |||||||||| |
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| T |
40898569 |
aacacacgaaaacatgcttt-aaacgcgcgtgcaagcatgcaggaggttcacttcaatttttata |
40898506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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