View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16154_low_3 (Length: 563)

Name: NF16154_low_3
Description: NF16154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16154_low_3
NF16154_low_3
[»] chr7 (8 HSPs)
chr7 (152-430)||(10377155-10377433)
chr7 (461-549)||(10377464-10377552)
chr7 (511-549)||(8239064-8239102)
chr7 (512-549)||(21140996-21141033)
chr7 (512-549)||(22868050-22868087)
chr7 (481-549)||(5235963-5236031)
chr7 (505-549)||(12278836-12278880)
chr7 (501-549)||(29787383-29787431)
[»] chr5 (7 HSPs)
chr5 (1-71)||(13879274-13879344)
chr5 (502-549)||(34276870-34276917)
chr5 (481-546)||(15410465-15410530)
chr5 (481-548)||(21191071-21191138)
chr5 (481-549)||(25888307-25888377)
chr5 (484-546)||(34879330-34879392)
chr5 (496-549)||(28588688-28588741)
[»] chr8 (11 HSPs)
chr8 (481-549)||(27213524-27213592)
chr8 (504-549)||(11803259-11803304)
chr8 (496-549)||(4786352-4786405)
chr8 (501-549)||(11927100-11927148)
chr8 (481-549)||(11944642-11944710)
chr8 (503-549)||(12606843-12606889)
chr8 (503-549)||(31580141-31580187)
chr8 (487-549)||(34897068-34897130)
chr8 (496-549)||(13844610-13844663)
chr8 (481-549)||(28385008-28385076)
chr8 (493-545)||(41831958-41832010)
[»] chr2 (10 HSPs)
chr2 (484-550)||(16069267-16069333)
chr2 (481-549)||(21616739-21616807)
chr2 (496-549)||(21782832-21782885)
chr2 (496-549)||(39279667-39279720)
chr2 (484-548)||(30404865-30404929)
chr2 (505-549)||(30527609-30527653)
chr2 (482-548)||(18421941-18422007)
chr2 (505-547)||(22084848-22084890)
chr2 (496-549)||(19573970-19574023)
chr2 (496-549)||(35449505-35449558)
[»] chr6 (20 HSPs)
chr6 (481-549)||(9658856-9658924)
chr6 (496-549)||(7996392-7996445)
chr6 (496-549)||(8022356-8022409)
chr6 (479-549)||(17341678-17341748)
chr6 (512-549)||(8389486-8389523)
chr6 (481-549)||(3398596-3398663)
chr6 (496-546)||(13364722-13364772)
chr6 (491-549)||(19040339-19040397)
chr6 (496-549)||(677829-677882)
chr6 (504-549)||(9025508-9025553)
chr6 (496-549)||(26562681-26562734)
chr6 (512-549)||(32511680-32511717)
chr6 (512-548)||(2224234-2224270)
chr6 (481-549)||(5732524-5732592)
chr6 (481-549)||(7938093-7938161)
chr6 (481-549)||(9027155-9027223)
chr6 (481-549)||(9629360-9629428)
chr6 (501-549)||(21924949-21924997)
chr6 (484-548)||(23771559-23771622)
chr6 (505-549)||(31579239-31579283)
[»] chr3 (13 HSPs)
chr3 (481-549)||(8383234-8383302)
chr3 (481-549)||(14840305-14840373)
chr3 (481-548)||(15796309-15796376)
chr3 (502-549)||(7614429-7614476)
chr3 (510-549)||(16789018-16789057)
chr3 (496-546)||(1830335-1830385)
chr3 (502-544)||(4466619-4466661)
chr3 (487-537)||(5339091-5339141)
chr3 (496-549)||(10455782-10455835)
chr3 (480-549)||(32804554-32804623)
chr3 (481-549)||(24205055-24205123)
chr3 (501-549)||(25093499-25093547)
chr3 (505-549)||(30994896-30994940)
[»] chr4 (10 HSPs)
chr4 (487-549)||(1213235-1213296)
chr4 (496-549)||(21539881-21539934)
chr4 (504-549)||(56257933-56257978)
chr4 (503-549)||(22440614-22440660)
chr4 (503-549)||(26504313-26504359)
chr4 (481-548)||(49041876-49041945)
chr4 (501-549)||(13134447-13134495)
chr4 (501-549)||(14126125-14126173)
chr4 (481-549)||(24343484-24343552)
chr4 (489-549)||(35952631-35952691)
[»] chr1 (15 HSPs)
chr1 (486-547)||(12443476-12443537)
chr1 (484-545)||(15641048-15641109)
chr1 (484-549)||(52903229-52903294)
chr1 (481-549)||(398779-398847)
chr1 (501-549)||(13436455-13436503)
chr1 (482-549)||(1486723-1486790)
chr1 (502-549)||(1864894-1864941)
chr1 (481-548)||(5376515-5376582)
chr1 (496-549)||(13997875-13997928)
chr1 (496-549)||(36878453-36878506)
chr1 (504-549)||(40181871-40181916)
chr1 (493-537)||(21530678-21530722)
chr1 (481-549)||(34298413-34298481)
chr1 (481-549)||(39130781-39130849)
chr1 (484-548)||(46348398-46348462)
[»] scaffold0136 (1 HSPs)
scaffold0136 (501-548)||(3864-3911)
[»] scaffold0027 (1 HSPs)
scaffold0027 (481-548)||(46659-46726)
[»] scaffold0022 (1 HSPs)
scaffold0022 (511-549)||(90850-90888)
[»] scaffold0697 (1 HSPs)
scaffold0697 (493-537)||(1633-1677)
[»] scaffold0103 (1 HSPs)
scaffold0103 (484-548)||(51791-51855)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 152 - 430
Target Start/End: Original strand, 10377155 - 10377433
Alignment:
Q  152 ccagaacctccacaagatatgtcttcaggtttctcaacatcaaacagtgtgttctcagcatcaccttacaatgttcaagttattgttgaagatgatgagc 251  Q
    |||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10377155 ccagaaccaccacaagatatgtcttcaagtttctcaacatcaaacactgtgttctcagcatcaccttacaatgttcaaattattgttgaagatgatgagc 10377254  T
Q  252 ctgaagagaggtttattagtaggtttcgtagagaggttttcagtgctggtattattcaagagtttaagagaagaacgcgttttgagaatccacaggatga 351  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  10377255 ctgaagagaggtttcttaataggtttcgtagagaggttttcagtgctggtattattcaagagtgtaagagaagaaagcgttttgagaatccacaggatga 10377354  T
Q  352 gaagaaaagaagagttcgtgatgctgctaagcgtaatcgtaggaacaagtttgctaggtatgttattacgggaatttca 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10377355 gaagaaaagaagagttcgtgatgctgctaagcgtaatcgtaggaacaagtttgctaggtatgttattacgggaatttca 10377433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 461 - 549
Target Start/End: Original strand, 10377464 - 10377552
Alignment:
Q  461 acctgtttggataatttgtgcacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10377464 acctgtttggataatttgtgcacgacacggatactggcaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 10377552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 549
Target Start/End: Complemental strand, 8239102 - 8239064
Alignment:
Q  511 ttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||| |||||||||| |||||||||||||||||||    
T  8239102 ttaataatttaagaaaatcttataattcagtgtaattat 8239064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 549
Target Start/End: Complemental strand, 21141033 - 21140996
Alignment:
Q  512 taataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  21141033 taataatttaagaaaatcatataattcagtgtgattat 21140996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 549
Target Start/End: Original strand, 22868050 - 22868087
Alignment:
Q  512 taataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  22868050 taataatatgagaaaatcacataattcagtgtaattat 22868087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 5235963 - 5236031
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||| || || |||| | |||||| | ||||||| ||||||||| |||||||| |||||||||||    
T  5235963 cacgacacagacactgacacgtcgacaccgctaataatttaagaaaattatataatttagtgtaattat 5236031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 549
Target Start/End: Original strand, 12278836 - 12278880
Alignment:
Q  505 acactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||| ||||||| ||||||||| | ||||||||||||||||||    
T  12278836 acactgataataatttaagaaaatgacataattcagtgtaattat 12278880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 29787431 - 29787383
Alignment:
Q  501 gccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||| | ||||||| | ||||||||| ||||||||||||||||||    
T  29787431 gccgacaccgctaataatttgagaaaatcacataattcagtgtaattat 29787383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 13879274 - 13879344
Alignment:
Q  1 agtaactaaaaaactacttctctgttcatccctccctcttttaagtgaaacctaaaacatatctagatgag 71  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13879274 agtaactaaaatactacttctctgttcatccctccctcttttaagtgaaacctaaaacatagctagatgag 13879344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 502 - 549
Target Start/End: Original strand, 34276870 - 34276917
Alignment:
Q  502 ccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  34276870 ccgacacagttaataatttaagaaaatcataaaattcagtgtaattat 34276917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 481 - 546
Target Start/End: Complemental strand, 15410530 - 15410465
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaat 546  Q
    ||||||||||| || |||| |||||||| | ||||||| ||||||||| |||| ||||||||||||    
T  15410530 cacgacacggacactgacacgccgacaccgctaataatttaagaaaattatatgattcagtgtaat 15410465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 548
Target Start/End: Complemental strand, 21191138 - 21191071
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaatta 548  Q
    ||||||||||| || |||| |||||||| | ||||||| | | ||||||| |||||||||||||||||    
T  21191138 cacgacacggacactgacatgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 21191071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 549
Target Start/End: Complemental strand, 25888377 - 25888307
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatat--aagaaaatcatataattcagtgtaattat 549  Q
    |||||||||||||||||||  || |||||  ||||||| |  || ||||||||||||||||||||||||||    
T  25888377 cacgacacggatacagacacaccaacactactaataattttaaaaaaaatcatataattcagtgtaattat 25888307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 546
Target Start/End: Original strand, 34879330 - 34879392
Alignment:
Q  484 gacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaat 546  Q
    ||||||||||| |||| |||| ||| | ||| ||| | |||||||||||||||||||||||||    
T  34879330 gacacggatacggacacgccggcaccgctaaaaatttgagaaaatcatataattcagtgtaat 34879392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 549
Target Start/End: Complemental strand, 28588741 - 28588688
Alignment:
Q  496 gacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||| |||||||| | ||||||| | ||||||||| ||||||||||||||||||    
T  28588741 gacacgccgacaccggtaataatttgagaaaatcacataattcagtgtaattat 28588688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 27213524 - 27213592
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||||||||||||||| |||||||||| ||||||| | ||||||||| |||||||| |||||||||    
T  27213524 cacgacacggatacagacacgccgacactgctaataatttcagaaaatcacataattcactgtaattat 27213592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 504 - 549
Target Start/End: Original strand, 11803259 - 11803304
Alignment:
Q  504 gacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  11803259 gacactgttaataatttaagaaaatcacataattcagtgtaattat 11803304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 496 - 549
Target Start/End: Complemental strand, 4786405 - 4786352
Alignment:
Q  496 gacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||| ||||||||  |||||||| ||||||||||| ||||||||||||||||||    
T  4786405 gacacgccgacaccattaataatttaagaaaatcacataattcagtgtaattat 4786352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 11927148 - 11927100
Alignment:
Q  501 gccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||||||||||||| | | ||||||| ||||||||||||||||||    
T  11927148 gccgacactgttaataatttgataaaatcacataattcagtgtaattat 11927100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 11944642 - 11944710
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||||||| |  ||| |||||||||||||||||| | | ||||||| |||| |||||||||||||    
T  11944642 cacgacacggatgctaacacgccgacactgttaataatttgataaaatcacataactcagtgtaattat 11944710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 503 - 549
Target Start/End: Complemental strand, 12606889 - 12606843
Alignment:
Q  503 cgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||| ||||||| | |||||||||||||||||| |||||||||    
T  12606889 cgacactgctaataatttgagaaaatcatataattcaatgtaattat 12606843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 503 - 549
Target Start/End: Complemental strand, 31580187 - 31580141
Alignment:
Q  503 cgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||| |||||||||| ||||||||||| |||||| |||||||||||    
T  31580187 cgacaatgttaataatttaagaaaatcacataattgagtgtaattat 31580141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 549
Target Start/End: Original strand, 34897068 - 34897130
Alignment:
Q  487 acggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||| ||||||| | |||||| | ||||||| | ||||||||| ||||||||||||||||||    
T  34897068 acggacacagacacgtcgacaccgctaataatttgagaaaatcacataattcagtgtaattat 34897130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 549
Target Start/End: Complemental strand, 13844663 - 13844610
Alignment:
Q  496 gacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||| |||||||||| ||||||| | ||||||||| |||||| |||||||||||    
T  13844663 gacacgccgacactgctaataatttgagaaaatcacataattgagtgtaattat 13844610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 549
Target Start/End: Complemental strand, 28385076 - 28385008
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||||||| || ||||  ||||||| ||||||||||| |  |||||  ||||||||||||||||||    
T  28385076 cacgacacggacactgacataccgacaccgttaataatatgaataaatctcataattcagtgtaattat 28385008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 545
Target Start/End: Complemental strand, 41832010 - 41831958
Alignment:
Q  493 acagacaggccgacactgttaataatataagaaaatcatataattcagtgtaa 545  Q
    ||||||| |||||||| ||||||||| | | ||||||| ||||||||||||||    
T  41832010 acagacatgccgacacagttaataatttgaaaaaatcacataattcagtgtaa 41831958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 484 - 550
Target Start/End: Complemental strand, 16069333 - 16069267
Alignment:
Q  484 gacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattatt 550  Q
    |||||||| || |||| |||||||| ||||||||| ||| |||||||||||||||||||||||||||    
T  16069333 gacacggacactgacacgccgacaccgttaataatttaaaaaaatcatataattcagtgtaattatt 16069267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 21616739 - 21616807
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||||||| || |||| |||||||| | ||||||| | ||||||||| ||||||||||||||||||    
T  21616739 cacgacacggacacggacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattat 21616807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 496 - 549
Target Start/End: Complemental strand, 21782885 - 21782832
Alignment:
Q  496 gacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||| |||||||||| ||||||| | ||||||||| ||||||||||||||||||    
T  21782885 gacacgccgacactgctaataatttgagaaaatcacataattcagtgtaattat 21782832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 496 - 549
Target Start/End: Original strand, 39279667 - 39279720
Alignment:
Q  496 gacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||| ||| |||| ||||||||||| ||||||||| ||||||||||||||||||    
T  39279667 gacacgccaacaccgttaataatatgagaaaatcaaataattcagtgtaattat 39279720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 548
Target Start/End: Complemental strand, 30404929 - 30404865
Alignment:
Q  484 gacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaatta 548  Q
    |||||||| || |||| |||||||| ||||||||| | | ||||||| |||||||||||||||||    
T  30404929 gacacggacactgacacgccgacacggttaataatttgaaaaaatcacataattcagtgtaatta 30404865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 505 - 549
Target Start/End: Complemental strand, 30527653 - 30527609
Alignment:
Q  505 acactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||||||||| | |||||||||||||||| |||||||||||    
T  30527653 acactgttaataatttgagaaaatcatataatttagtgtaattat 30527609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 548
Target Start/End: Original strand, 18421941 - 18422007
Alignment:
Q  482 acgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaatta 548  Q
    |||||||||| || |||| ||||||||  |||||||| ||| || |||| |||||||||||||||||    
T  18421941 acgacacggacactgacacgccgacacaattaataatttaaaaatatcacataattcagtgtaatta 18422007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 505 - 547
Target Start/End: Complemental strand, 22084890 - 22084848
Alignment:
Q  505 acactgttaataatataagaaaatcatataattcagtgtaatt 547  Q
    |||| ||||||||| | ||||||||||||||||||||||||||    
T  22084890 acaccgttaataatttgagaaaatcatataattcagtgtaatt 22084848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 549
Target Start/End: Original strand, 19573970 - 19574023
Alignment:
Q  496 gacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||| |||||||| | ||||||| ||||||||| | ||||||||||||||||||    
T  19573970 gacacgccgacaccgataataatttaagaaaataacataattcagtgtaattat 19574023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 549
Target Start/End: Original strand, 35449505 - 35449558
Alignment:
Q  496 gacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||| ||| |||||||||||||| | ||||||||| | ||||||||||||||||    
T  35449505 gacaagccaacactgttaataatttgagaaaatcacagaattcagtgtaattat 35449558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 9658856 - 9658924
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||||||| || |||| |||||||| | ||||||| ||||||||||| ||||||||||||||||||    
T  9658856 cacgacacggacactgacacgccgacaccgctaataatttaagaaaatcacataattcagtgtaattat 9658924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 496 - 549
Target Start/End: Complemental strand, 7996445 - 7996392
Alignment:
Q  496 gacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||| |||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  7996445 gacatgccgacactgctaataatttgagaaaatcatataattcagtgtaattat 7996392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 496 - 549
Target Start/End: Original strand, 8022356 - 8022409
Alignment:
Q  496 gacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||| |||||||||| ||||||| | ||||||||||||||||||||||||||||    
T  8022356 gacatgccgacactgctaataatttgagaaaatcatataattcagtgtaattat 8022409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 479 - 549
Target Start/End: Complemental strand, 17341748 - 17341678
Alignment:
Q  479 tgcacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||||||||  || |||| |||||||| ||||||||| | | ||||||| ||||||||||||||||||    
T  17341748 tgcacgacacgggcactgacacgccgacaccgttaataatttgataaaatcacataattcagtgtaattat 17341678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 512 - 549
Target Start/End: Complemental strand, 8389523 - 8389486
Alignment:
Q  512 taataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  8389523 taataatttaagaaaatcatataattcagtgtaattat 8389486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 3398596 - 3398663
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||||||| || |||| |||||||| | ||||||| | | ||||||||||||||||||||||||||    
T  3398596 cacgacacggacactgacacgccgacacagctaataatttga-aaaatcatataattcagtgtaattat 3398663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 546
Target Start/End: Complemental strand, 13364772 - 13364722
Alignment:
Q  496 gacaggccgacactgttaataatataagaaaatcatataattcagtgtaat 546  Q
    |||| |||||||||| | ||||| | |||||||||||||||||||||||||    
T  13364772 gacatgccgacactgcttataatttgagaaaatcatataattcagtgtaat 13364722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 491 - 549
Target Start/End: Original strand, 19040339 - 19040397
Alignment:
Q  491 atacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||| |||| |||||||| | ||||||| | ||||||||| ||||||||||||||||||    
T  19040339 atactgacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattat 19040397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 549
Target Start/End: Original strand, 677829 - 677882
Alignment:
Q  496 gacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||| |||||||||||||||||| | |||||||||||||||  |||||| ||||    
T  677829 gacacgccgacactgttaataatttgagaaaatcatataatatagtgtatttat 677882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 549
Target Start/End: Complemental strand, 9025553 - 9025508
Alignment:
Q  504 gacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||| ||||||| | ||||||||| ||||||||||||||||||    
T  9025553 gacactgctaataatttgagaaaatcacataattcagtgtaattat 9025508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 549
Target Start/End: Original strand, 26562681 - 26562734
Alignment:
Q  496 gacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||| |||||||||| ||| ||| | ||||||||| ||||||||||||||||||    
T  26562681 gacacgccgacactgctaaaaatttgagaaaatcacataattcagtgtaattat 26562734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 512 - 549
Target Start/End: Complemental strand, 32511717 - 32511680
Alignment:
Q  512 taataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  32511717 taataatttaagaaaatcacataattcagtgtaattat 32511680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 512 - 548
Target Start/End: Original strand, 2224234 - 2224270
Alignment:
Q  512 taataatataagaaaatcatataattcagtgtaatta 548  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  2224234 taataatttaaaaaaatcatataattcagtgtaatta 2224270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 549
Target Start/End: Complemental strand, 5732592 - 5732524
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||| ||| || |||| |||||||| ||||||||| | ||||||||| ||| || |||||||||||    
T  5732592 cacgacatggacactgacacgccgacaccgttaataatttgagaaaatcacatattttagtgtaattat 5732524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 7938093 - 7938161
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||| ||| || |||| |||||||| | ||||||| | | |||||||||||||| |||||||||||    
T  7938093 cacgacatggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaattat 7938161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 9027155 - 9027223
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||||||| || |||| |||||||| | ||||||| | ||| ||||| ||||||| ||||||||||    
T  9027155 cacgacacggacactgacacgccgacaccgctaataatttgagataatcacataattccgtgtaattat 9027223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 9629360 - 9629428
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||||||||  |||| |||||||| |  |||||| | ||||||||| |||||||| |||||||||    
T  9629360 cacgacacggatattgacacgccgacaccgccaataatttgagaaaatcacataattcaatgtaattat 9629428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 21924997 - 21924949
Alignment:
Q  501 gccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||||| ||||||| | |||| |||| ||||||||||||||||||    
T  21924997 gccgacactgctaataatttgagaatatcaaataattcagtgtaattat 21924949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 548
Target Start/End: Original strand, 23771559 - 23771622
Alignment:
Q  484 gacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaatta 548  Q
    |||||||| || |||| |||||||| ||||||||| ||| ||||| ||||| |||||||||||||    
T  23771559 gacacggacacggacacgccgacacagttaataatttaa-aaaattatatacttcagtgtaatta 23771622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 549
Target Start/End: Complemental strand, 31579283 - 31579239
Alignment:
Q  505 acactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||| ||||||||| | ||||||||| ||||||||||||||||||    
T  31579283 acaccgttaataatttgagaaaatcacataattcagtgtaattat 31579239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 8383234 - 8383302
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||||||| |  |||| |||||||| | ||||||| | ||||||||||||||||||||||||||||    
T  8383234 cacgacacggacattgacacgccgacaccgctaataatttgagaaaatcatataattcagtgtaattat 8383302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 549
Target Start/End: Complemental strand, 14840373 - 14840305
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||||||||| |||| ||| ||||  |||||||| | ||||||||| ||||||||||||||||||    
T  14840373 cacgacacggataccgacacgccaacaccattaataatttcagaaaatcacataattcagtgtaattat 14840305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 481 - 548
Target Start/End: Complemental strand, 15796376 - 15796309
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaatta 548  Q
    ||||||||||| |  |||| |||||||| ||||||||| | | |||||||||||||||||||||||||    
T  15796376 cacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcatataattcagtgtaatta 15796309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 549
Target Start/End: Complemental strand, 7614476 - 7614429
Alignment:
Q  502 ccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||| ||||||||| ||||||||||| |||||||||| |||||||    
T  7614476 ccgacacagttaataatttaagaaaatcacataattcagtataattat 7614429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 549
Target Start/End: Original strand, 16789018 - 16789057
Alignment:
Q  510 gttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  16789018 gttaataatttaaaaaaatcatataattcagtgtaattat 16789057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 496 - 546
Target Start/End: Original strand, 1830335 - 1830385
Alignment:
Q  496 gacaggccgacactgttaataatataagaaaatcatataattcagtgtaat 546  Q
    |||| ||||||||| |||||||| ||||||||| | |||||||||||||||    
T  1830335 gacatgccgacacttttaataatttaagaaaatgacataattcagtgtaat 1830385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 502 - 544
Target Start/End: Complemental strand, 4466661 - 4466619
Alignment:
Q  502 ccgacactgttaataatataagaaaatcatataattcagtgta 544  Q
    ||||||| | ||||||| |||||||||||||||||||||||||    
T  4466661 ccgacaccggtaataatttaagaaaatcatataattcagtgta 4466619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 487 - 537
Target Start/End: Original strand, 5339091 - 5339141
Alignment:
Q  487 acggatacagacaggccgacactgttaataatataagaaaatcatataatt 537  Q
    ||||||||||||| ||||||| |||||||||| | ||||||||| ||||||    
T  5339091 acggatacagacacgccgacattgttaataatttgagaaaatcacataatt 5339141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 549
Target Start/End: Original strand, 10455782 - 10455835
Alignment:
Q  496 gacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||| ||| |||||| ||||||||| |||||||||||||| | |||||||||||    
T  10455782 gacacgccaacactgctaataatatgagaaaatcatataactaagtgtaattat 10455835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 480 - 549
Target Start/End: Complemental strand, 32804623 - 32804554
Alignment:
Q  480 gcacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||||||  |  |||| |||||||| ||||||||| | ||||||||| |||||| |||||||||||    
T  32804623 gcacgacacgggcattgacatgccgacaccgttaataatttgagaaaatcacataatttagtgtaattat 32804554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 549
Target Start/End: Complemental strand, 24205123 - 24205055
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||||||| || |||| |||||||| | ||||||| | ||||||| | ||||| ||||||||||||    
T  24205123 cacgacacggacactgacacgccgacacggataataatttgagaaaatgacataatacagtgtaattat 24205055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 25093499 - 25093547
Alignment:
Q  501 gccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||||||||||| || | ||||||||| | ||||||||||||||||    
T  25093499 gccgacactgttaatgatttgagaaaatcacacaattcagtgtaattat 25093547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 505 - 549
Target Start/End: Complemental strand, 30994940 - 30994896
Alignment:
Q  505 acactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||| ||||||| ||||||||||| | ||||||||||||||||    
T  30994940 acactgctaataatttaagaaaatcacacaattcagtgtaattat 30994896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 487 - 549
Target Start/End: Complemental strand, 1213296 - 1213235
Alignment:
Q  487 acggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||||||||| |  ||||||||||||||| ||| ||||| ||||||||||||||||||||    
T  1213296 acggatacagacacgttgacactgttaataatttaa-aaaattatataattcagtgtaattat 1213235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 496 - 549
Target Start/End: Complemental strand, 21539934 - 21539881
Alignment:
Q  496 gacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||| ||||||||  |||||||| |||||||||||||||||| |||||||||||    
T  21539934 gacatgccgacaccattaataatttaagaaaatcatataatttagtgtaattat 21539881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 504 - 549
Target Start/End: Original strand, 56257933 - 56257978
Alignment:
Q  504 gacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||| ||||||| | ||||||||||||||||||||||||||||    
T  56257933 gacactgctaataatttgagaaaatcatataattcagtgtaattat 56257978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 503 - 549
Target Start/End: Complemental strand, 22440660 - 22440614
Alignment:
Q  503 cgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||| ||||||||| | ||||||||| ||||||||||||||||||    
T  22440660 cgacaccgttaataatttgagaaaatcacataattcagtgtaattat 22440614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 503 - 549
Target Start/End: Complemental strand, 26504359 - 26504313
Alignment:
Q  503 cgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||| ||||||| ||||||||||| ||| ||||||||||||||    
T  26504359 cgacactgctaataatttaagaaaatcaaatagttcagtgtaattat 26504313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 548
Target Start/End: Complemental strand, 49041945 - 49041876
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataa--tataagaaaatcatataattcagtgtaatta 548  Q
    |||||||| ||||| || |||| ||||| ||||||||  || || |||||||||||||||||||||||||    
T  49041945 cacgacactgataccgataggctgacacagttaataaattaaaaaaaaatcatataattcagtgtaatta 49041876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 13134447 - 13134495
Alignment:
Q  501 gccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||||| | ||||| ||||||||||| |||||| |||||||||||    
T  13134447 gccgacactgcttataatttaagaaaatcacataatttagtgtaattat 13134495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 501 - 549
Target Start/End: Complemental strand, 14126173 - 14126125
Alignment:
Q  501 gccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||||||||||||| | | ||| ||| ||||||||||||||||||    
T  14126173 gccgacactgttaataatttgataaagtcacataattcagtgtaattat 14126125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 24343484 - 24343552
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||||||  | |||| |||||||| | ||||||| | ||||||| | ||||||||||||||||||    
T  24343484 cacgacacggacgccgacacgccgacacggataataatttgagaaaattacataattcagtgtaattat 24343552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 489 - 549
Target Start/End: Complemental strand, 35952691 - 35952631
Alignment:
Q  489 ggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||| |||| |||| ||||| ||||||| | | |||||||||||||||| |||||||||    
T  35952691 ggatacggacacgccgccactgctaataatttgataaaatcatataattcaatgtaattat 35952631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 486 - 547
Target Start/End: Complemental strand, 12443537 - 12443476
Alignment:
Q  486 cacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaatt 547  Q
    ||||||||| |||| |||||||| | ||||||| | ||||||||| ||||||||||||||||    
T  12443537 cacggatacggacacgccgacacagctaataatttgagaaaatcacataattcagtgtaatt 12443476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 484 - 545
Target Start/End: Complemental strand, 15641109 - 15641048
Alignment:
Q  484 gacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaa 545  Q
    |||||||| || |||| |||||||||| ||||||| ||||||||||| || |||||||||||    
T  15641109 gacacggacactgacatgccgacactgctaataatttaagaaaatcacatgattcagtgtaa 15641048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 484 - 549
Target Start/End: Original strand, 52903229 - 52903294
Alignment:
Q  484 gacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||| ||  ||| ||||| || ||||||||| ||| ||||||||||||||||||||||||||    
T  52903229 gacacggacactaacacgccgataccgttaataatttaataaaatcatataattcagtgtaattat 52903294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 481 - 549
Target Start/End: Complemental strand, 398847 - 398779
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||||||| || |||| |||||||| | ||||||| | | ||||||| ||||||||||||||||||    
T  398847 cacgacacggacactgacacgccgacaccgctaataatttgaaaaaatcacataattcagtgtaattat 398779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 501 - 549
Target Start/End: Original strand, 13436455 - 13436503
Alignment:
Q  501 gccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||||| ||||||| |||| |||||| ||||||||||||||||||    
T  13436455 gccgacactgctaataatttaaggaaatcacataattcagtgtaattat 13436503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 549
Target Start/End: Complemental strand, 1486790 - 1486723
Alignment:
Q  482 acgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||||||||| |||| || ||||| | ||||||| | | ||||||| ||||||||||||||||||    
T  1486790 acgacacggatactgacacgctgacacagctaataatttgaaaaaatcacataattcagtgtaattat 1486723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 502 - 549
Target Start/End: Complemental strand, 1864941 - 1864894
Alignment:
Q  502 ccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||| ||||||||| | ||||||||| ||||||||||||||||||    
T  1864941 ccgacacagttaataatttgagaaaatcacataattcagtgtaattat 1864894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 548
Target Start/End: Complemental strand, 5376582 - 5376515
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaatta 548  Q
    ||||||||||| ||  ||| |||||||| | ||||||| ||||||||| | |||||||||||||||||    
T  5376582 cacgacacggacactaacacgccgacaccgctaataatttaagaaaataacataattcagtgtaatta 5376515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 549
Target Start/End: Original strand, 13997875 - 13997928
Alignment:
Q  496 gacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||| |||||||| |||||| || ||| ||||||| ||||||||||||||||||    
T  13997875 gacacgccgacaccgttaattatttaaaaaaatcacataattcagtgtaattat 13997928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 496 - 549
Target Start/End: Original strand, 36878453 - 36878506
Alignment:
Q  496 gacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||| |||||||| | ||||||| | ||||||||| ||||||||||||||||||    
T  36878453 gacacgccgacaccgctaataatttgagaaaatcacataattcagtgtaattat 36878506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 504 - 549
Target Start/End: Original strand, 40181871 - 40181916
Alignment:
Q  504 gacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||| ||||||| | ||||||||| ||||||||||||||||||    
T  40181871 gacactgctaataatttgagaaaatcacataattcagtgtaattat 40181916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 537
Target Start/End: Original strand, 21530678 - 21530722
Alignment:
Q  493 acagacaggccgacactgttaataatataagaaaatcatataatt 537  Q
    ||||||| |||||||| ||||||||| | ||||||||||||||||    
T  21530678 acagacacgccgacaccgttaataatttgagaaaatcatataatt 21530722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 549
Target Start/End: Original strand, 34298413 - 34298481
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||||||| || ||||  |||||||   ||||||| | ||||||||| ||||||||||||||||||    
T  34298413 cacgacacggaaactgacacaccgacaccactaataatttgagaaaatcacataattcagtgtaattat 34298481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 481 - 549
Target Start/End: Complemental strand, 39130849 - 39130781
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaattat 549  Q
    ||||||| |||||  |||| || |||||| |||||||| | ||||||| |||||||| |||||||||||    
T  39130849 cacgacatggatattgacacgctgacactattaataattttagaaaattatataatttagtgtaattat 39130781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 548
Target Start/End: Complemental strand, 46348462 - 46348398
Alignment:
Q  484 gacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaatta 548  Q
    |||||||| || |||| |||||||| | ||||||| | | |||||||||||||| ||||||||||    
T  46348462 gacacggacactgacacgccgacacagctaataatttgaaaaaatcatataatttagtgtaatta 46348398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 548
Target Start/End: Complemental strand, 3911 - 3864
Alignment:
Q  501 gccgacactgttaataatataagaaaatcatataattcagtgtaatta 548  Q
    |||||||| ||||||||| ||| ||||||| |||||||||||||||||    
T  3911 gccgacacggttaataatttaaaaaaatcacataattcagtgtaatta 3864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 548
Target Start/End: Original strand, 46659 - 46726
Alignment:
Q  481 cacgacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaatta 548  Q
    ||||||||||| |  |||| |||||||| ||||||||| | | ||||||| |||||||||||||||||    
T  46659 cacgacacggacaatgacacgccgacacagttaataatttgaaaaaatcacataattcagtgtaatta 46726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 549
Target Start/End: Original strand, 90850 - 90888
Alignment:
Q  511 ttaataatataagaaaatcatataattcagtgtaattat 549  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  90850 ttaataatttgagaaaatcatataattcagtgtaattat 90888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 493 - 537
Target Start/End: Original strand, 1633 - 1677
Alignment:
Q  493 acagacaggccgacactgttaataatataagaaaatcatataatt 537  Q
    ||||||| |||||||| ||||||||| | ||||||||||||||||    
T  1633 acagacacgccgacaccgttaataatttgagaaaatcatataatt 1677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 484 - 548
Target Start/End: Original strand, 51791 - 51855
Alignment:
Q  484 gacacggatacagacaggccgacactgttaataatataagaaaatcatataattcagtgtaatta 548  Q
    |||||||| || |||| |||||||| | ||||||| | | ||||||| |||||||||||||||||    
T  51791 gacacggacactgacacgccgacacagctaataatttgaaaaaatcacataattcagtgtaatta 51855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University