View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16154_low_6 (Length: 467)

Name: NF16154_low_6
Description: NF16154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16154_low_6
NF16154_low_6
[»] chr8 (3 HSPs)
chr8 (222-450)||(1182678-1182906)
chr8 (35-221)||(1183160-1183342)
chr8 (1-33)||(1183580-1183612)
[»] chr4 (2 HSPs)
chr4 (222-399)||(26076175-26076352)
chr4 (162-214)||(5706782-5706834)
[»] chr2 (1 HSPs)
chr2 (222-399)||(12370590-12370767)
[»] chr1 (1 HSPs)
chr1 (237-399)||(4958602-4958764)
[»] chr7 (2 HSPs)
chr7 (222-427)||(5242957-5243161)
chr7 (35-120)||(5243516-5243601)
[»] chr3 (3 HSPs)
chr3 (222-450)||(32368621-32368849)
chr3 (162-214)||(18641439-18641491)
chr3 (60-105)||(32368156-32368201)
[»] chr6 (1 HSPs)
chr6 (242-309)||(9636620-9636687)
[»] chr5 (1 HSPs)
chr5 (213-274)||(33717078-33717140)


Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 222 - 450
Target Start/End: Complemental strand, 1182906 - 1182678
Alignment:
Q  222 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 321  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  1182906 agatgagatttcctaggatcattcatgtatctactgatgatacttaccgcaaagcatatatcaggtctgttattgcataggcatctcagagatccaacta 1182807  T
Q  322 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcat 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1182806 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcat 1182707  T
Q  422 atcaaacttttctagcagttcaccaatgt 450  Q
    |||||||||||||||||||||||||||||    
T  1182706 atcaaacttttctagcagttcaccaatgt 1182678  T

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Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 35 - 221
Target Start/End: Complemental strand, 1183342 - 1183160
Alignment:
Q  35 tgtcacttgttccatgatgaaatataacctagtttcaacgtgtttacttcttccatgtgctataggattcttagctagattaatagcttatttgtttgtt 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||    
T  1183342 tgtcacttgttccatgatgaaatataacctagtttcaacgtgtttacttcttccatgtgctataggattcttagctagattaatagcttatt----tgtt 1183247  T
Q  135 attaaatttcagcttcaaaggattttccacttcacagtttagctctttcatcactgtatccagccaaattgcttgacaagctgcaaa 221  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1183246 attaaatttcagcttcaaaggattttctacttcacagtttagctctttcatcactgtatccagccaaattgcttgacaagctgcaaa 1183160  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1183612 - 1183580
Alignment:
Q  1 gaagtttgttatggttttcattaattaatgaaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  1183612 gaagtttgttatggttttcattaattaatgaaa 1183580  T

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Target: chr4 (Bit Score: 74; Significance: 9e-34; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 222 - 399
Target Start/End: Complemental strand, 26076352 - 26076175
Alignment:
Q  222 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 321  Q
    |||||||| || || |||||||||||| |||||||| | |||||||| |||||||||||||| |||||||| ||||||| |||||| || ||||| ||||    
T  26076352 agatgagacttccttggatcattcatgaatctactgattatacttactgcaaagcatatatctggtctgttgttgcataagtatcttagtgatcccacta 26076253  T
Q  322 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttg 399  Q
    || |||||||||  ||||  ||  | || |||||||| ||||||||||| || ||||||||||||||||| |||||||    
T  26076252 tctgtttgaattcagtagactccgccttttcttcattactacattcatctagtttagcatttgtttcagatggatttg 26076175  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 5706834 - 5706782
Alignment:
Q  162 cacttcacagtttagctctttcatcactgtatccagccaaattgcttgacaag 214  Q
    ||||||||| || |||||||||||||||| ||||||||| | |||||||||||    
T  5706834 cacttcacacttgagctctttcatcactgaatccagccataatgcttgacaag 5706782  T

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Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 222 - 399
Target Start/End: Complemental strand, 12370767 - 12370590
Alignment:
Q  222 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 321  Q
    |||||||| || || |||||||||||| |||||||| |||||||||| |||||||||||||| |||||| | ||||||| ||||||||| ||||| ||||    
T  12370767 agatgagacttccttggatcattcatgcatctactgatgatacttactgcaaagcatatatctggtctgctgttgcataagtatctcagtgatcccacta 12370668  T
Q  322 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttg 399  Q
    |  |||||||||  ||||  || || || |||||||| || |||||||| || ||||||||||||||||| |||||||    
T  12370667 tatgtttgaattcagtagactccaccttttcttcattactgcattcatctagtttagcatttgtttcagatggatttg 12370590  T

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Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 237 - 399
Target Start/End: Original strand, 4958602 - 4958764
Alignment:
Q  237 ggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaactatcggtttgaattatg 336  Q
    |||||||||||| |||||||| |||||||||| |||||||||||||  |||||||| ||||||| ||||||||  ||||| |||||| |||||||||  |    
T  4958602 ggatcattcatgaatctactgatgatacttactgcaaagcatatatatggtctgttgttgcataagtatctcaatgatcccactatctgtttgaatttag 4958701  T
Q  337 tagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttg 399  Q
    |||  || || || |||||||| || |||||||| || ||||||||||||||||| |||||||    
T  4958702 tagactccaccttttcttcattactgcattcatctagtttagcatttgtttcagatggatttg 4958764  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 222 - 427
Target Start/End: Complemental strand, 5243161 - 5242957
Alignment:
Q  222 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 321  Q
    |||||||| || || |||||||||||| |||| ||  |||||||||| |||||||||||||| |||||  |||| |||| ||||||||  | ||| | ||    
T  5243161 agatgagacttccttggatcattcatgaatcttctaatgatacttactgcaaagcatatatctggtctactattacataagtatctcatgg-tcctatta 5243063  T
Q  322 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcat 421  Q
    || |  ||||||  |||| ||||||||||||||||||| | |||||||| |||||||||||||||||||||||||| ||  ||||||| ||||||  |||    
T  5243062 tctgcatgaattcagtaggttctactttctcttcattgatgcattcatctagcttagcatttgtttcagaaggattagttgcagtgttacaatctaccat 5242963  T
Q  422 atcaaa 427  Q
    ||||||    
T  5242962 atcaaa 5242957  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 5243601 - 5243516
Alignment:
Q  35 tgtcacttgttccatgatgaaatataacctagtttcaacgtgtttacttcttccatgtgctataggattcttagctagattaatag 120  Q
    ||||||||||||| | |||||||  ||||||||||||| |||||| || || ||||||| |||  |||| ||||||| ||| ||||    
T  5243601 tgtcacttgttcccttatgaaatgaaacctagtttcaatgtgttttctcctaccatgtgttattagattgttagctaaatttatag 5243516  T

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Target: chr3 (Bit Score: 61; Significance: 5e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 222 - 450
Target Start/End: Original strand, 32368621 - 32368849
Alignment:
Q  222 agatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctcagagatccaacta 321  Q
    ||||||||||| || |||||||||||| | |||| | |||||||||| |||||| ||||||| ||| |||| ||||||| |||  |||  ||||| ||||    
T  32368621 agatgagatttccttggatcattcatgaacctaccgatgatacttactgcaaaggatatatctggtttgttgttgcataagtacatcaatgatcccacta 32368720  T
Q  322 tcggtttgaattatgtagcttctactttctcttcattgctacattcatccagcttagcatttgtttcagaaggatttgtgacagtgttgcaatctgtcat 421  Q
    || |||||||||  |||| || |||| | ||||||||  |||| ||||||| |||||||||||||||||| ||||| |   || ||||||| ||  ||||    
T  32368721 tctgtttgaattcagtaggttttactctttcttcattagtacactcatccaacttagcatttgtttcagatggattcgatgcaatgttgcagtcaatcat 32368820  T
Q  422 atcaaacttttctagcagttcaccaatgt 450  Q
     | |||| |||| |||||||| |||||||    
T  32368821 ttgaaacctttcaagcagttccccaatgt 32368849  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 18641439 - 18641491
Alignment:
Q  162 cacttcacagtttagctctttcatcactgtatccagccaaattgcttgacaag 214  Q
    ||||||||| || |||||||||||||||| ||||||||| | |||||||||||    
T  18641439 cacttcacacttgagctctttcatcactgaatccagccataatgcttgacaag 18641491  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 105
Target Start/End: Original strand, 32368156 - 32368201
Alignment:
Q  60 aacctagtttcaacgtgtttacttcttccatgtgctataggattct 105  Q
    ||||||||||||| ||||||||| || ||||||||||| |||||||    
T  32368156 aacctagtttcaatgtgtttactcctgccatgtgctattggattct 32368201  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 9636687 - 9636620
Alignment:
Q  242 attcatgtatctactgctgatacttaccgcaaagcatatatcaggtctgttattgcataggtatctca 309  Q
    |||||||||||||||| |||  ||||   |||||||||| ||||||||| ||||||||| ||||||||    
T  9636687 attcatgtatctactggtgaagcttatttcaaagcatatgtcaggtctggtattgcataagtatctca 9636620  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 213 - 274
Target Start/End: Original strand, 33717078 - 33717140
Alignment:
Q  213 agctgcaa-aagatgagattttctaggatcattcatgtatctactgctgatacttaccgcaaa 274  Q
    |||||||| ||||| ||||||||  |||||||||||||||||| || |||||||||| |||||    
T  33717078 agctgcaataagattagattttcacggatcattcatgtatctattgatgatacttactgcaaa 33717140  T

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