View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16154_low_8 (Length: 429)
Name: NF16154_low_8
Description: NF16154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16154_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 43331563 - 43331977
Alignment:
| Q |
1 |
tttatgtgagagcatgaaacttattttagaatcctgtctagaaaattgaaacatgggagattgaacaatgattacgttctgttaagtgtgattgttgtga |
100 |
Q |
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| T |
43331563 |
tttatgtgagagcatgaaacttattttagaatcctgtctagaaaattgaaacatgggagattgaacaatgattacgttctgttaagtgtgattgttgtga |
43331662 |
T |
|
| Q |
101 |
cattttgtatcaatggcaatggcgatgactaataaaaaagctggttccaccaaagttagggatacacaaagcctcatttccaatattgaacttttttgag |
200 |
Q |
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| T |
43331663 |
cattttgtatcaatggcaatggcaatgactaataaaaaagctggttccaccaaagttagggatacacaaagcctcatttccaatattgaacttttttgag |
43331762 |
T |
|
| Q |
201 |
tacaaaaatctacattgtcttggttatttggacaaaaatttcacccggatacttgtacnnnnnnngaagatcaacatgctcccaaagctacattttcatc |
300 |
Q |
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| T |
43331763 |
tacaaaaatctacactgtcttggttatttggacaaaaatttcacccggatacttgtacaaaaaaagaagatcaacatgctcccaaagctacattttcatc |
43331862 |
T |
|
| Q |
301 |
cagtaatttataacattgtgtgttatgttttcaacattaagaataacttagtttaataaatcattataaacactagattttgaattcaacagatgaatta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43331863 |
cagtaatttataacattgtgtgttatgttttcaacattaagaataacttagtttcataaatcattataaacactagattttgaattcaacagatgaatta |
43331962 |
T |
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| Q |
401 |
aaaagttcttgttgt |
415 |
Q |
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| T |
43331963 |
aaaagttcttgttgt |
43331977 |
T |
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