View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16154_low_9 (Length: 417)

Name: NF16154_low_9
Description: NF16154
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16154_low_9
NF16154_low_9
[»] chr2 (4 HSPs)
chr2 (18-326)||(31621035-31621348)
chr2 (52-326)||(36666752-36667028)
chr2 (218-312)||(40893928-40894023)
chr2 (91-157)||(35306105-35306171)
[»] chr1 (4 HSPs)
chr1 (18-326)||(36574782-36575094)
chr1 (49-326)||(26530332-26530609)
chr1 (91-156)||(26529508-26529573)
chr1 (113-161)||(36575555-36575603)
[»] chr8 (3 HSPs)
chr8 (18-156)||(12887648-12887786)
chr8 (91-156)||(5005708-5005773)
chr8 (112-156)||(5014841-5014885)
[»] chr6 (1 HSPs)
chr6 (83-160)||(9448754-9448831)
[»] chr7 (3 HSPs)
chr7 (83-156)||(45296066-45296139)
chr7 (94-156)||(38516620-38516682)
chr7 (83-156)||(45291941-45292014)
[»] chr4 (1 HSPs)
chr4 (113-158)||(52190387-52190432)
[»] chr3 (1 HSPs)
chr3 (95-156)||(9099560-9099621)


Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 326
Target Start/End: Original strand, 31621035 - 31621348
Alignment:
Q  18 ttcataaagaagataatggtgttgctgttgatgttgttgatgtttagttttgagaaagatgatgatggttcaatttcttgatccagtgatatgtttgata 117  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||    
T  31621035 ttcagaaagaagataatggtgttgttgttgatgttgttgatgtttagttttgagaaagatgatgatggttcgatttcttgatccagggacatgtttgata 31621134  T
Q  118 gcgagatacacttttagggacccaaatgaagctttactcttttgtttctggtcccaaaattggagcttggtgggggtttgaaaaatgagggttttgtgga 217  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||||||||| ||  |||||||||||||||||||    
T  31621135 gcgaggtacacttttagggacccaaatgaaggtttactcttttgtttctggtaccaaaaatggagcttggtggggggtttgaaaatgagggttttgtgga 31621234  T
Q  218 tttgagctgactgaaggaactaccgt-cccccattcactcacccatcttcatttctaaattgaatttcggattggaggtttacttgttgtc----tgttt 312  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||    
T  31621235 tttgagctgactgaaggaactaccgtccccccattcactcacccatcttcatttctaaattgaatttcggattggaggtttacttgttgtctgtttgttt 31621334  T
Q  313 tagaagcttttagg 326  Q
    ||||||||||||||    
T  31621335 tagaagcttttagg 31621348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 52 - 326
Target Start/End: Original strand, 36666752 - 36667028
Alignment:
Q  52 tgttgatgtttagttttgagaaagatgatgatggttcaatttcttgatccagtgatatgtttgatagcgagatacacttttagggacccaaatgaagctt 151  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||||||||||| ||||||||||||||||||||| ||||||    
T  36666752 tgttgatgtttagttttgagaaagatgatgatggttcgatttcttgatccagggacatatttgatagcgaggtacacttttagggacccaaataaagctt 36666851  T
Q  152 tactcttttgtttctggtcccaaaattggagcttggtgggggtttgaaaaatgagggttttgtggatttgagctgactgaaggaactaccgt--ccccca 249  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||  ||||||    
T  36666852 tactcttttgtttctggtaccacaattggagcttggtgggggtttgaaaaatgagggttttatggatttgaactgactgaaggaactaccgtccccccca 36666951  T
Q  250 ttcactcacccatcttcatttctaaattgaatttcggattggaggtttacttgttgtctgttttagaagcttttagg 326  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  36666952 ttcactcactcatcttcatttctaaattgaatttcggattggaggtttacttgttgtctgttttagatgcttttagg 36667028  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 40893928 - 40894023
Alignment:
Q  218 tttgagctgactgaaggaactaccgtc-ccccattcactcacccatcttcatttctaaattgaatttcggattggaggtttacttgttgtctgttt 312  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||  |||||||| || || ||||| |||||    
T  40893928 tttgagctgactgaaggaactactgtcaccccattcactcacccatcttcatttttaaattgaatttcatattggaggatttctggttgtttgttt 40894023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 35306105 - 35306171
Alignment:
Q  91 tttcttgatccagtgatatgtttgatagcgagatacacttttagggacccaaatgaagctttactct 157  Q
    ||||||||| ||| || ||||||||||||||| |||||||| ||||||| |||||| | ||||||||    
T  35306105 tttcttgattcagggacatgtttgatagcgaggtacactttcagggacctaaatgagggtttactct 35306171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 36575094 - 36574782
Alignment:
Q  18 ttcataaagaagataatggtgttgctgttgatgttgttgatgtttagttttgagaaagatgatgatggttcaatttcttgatccagtgatatgtttgata 117  Q
    |||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||    
T  36575094 ttcagaaagaagataatgatgttgttgttgatgttgttgatgtttagttttgagaaagatgatgatggttcgatttcttgatccagggacatgtttgata 36574995  T
Q  118 gcgagatacacttttagggacccaaatgaagctttactcttttgtttctggtcccaaaattggagcttggtgggggtttgaaaaatgagggttttgtgga 217  Q
    ||||| |||||||| |||||||||||||||  |||||||||||||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||    
T  36574994 gcgaggtacactttcagggacccaaatgaaagtttactcttttgtttctggtaccaaaaatggagcttggtgggggtttg-aaaatgagggttttgtgga 36574896  T
Q  218 tttgagctgactgaaggaactaccgt-cccccattcactcacccatcttcatttctaaattgaatttcggattggaggtttacttgt----tgtctgttt 312  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    ||| |||||    
T  36574895 tttgagctgactgaaggaactaccgtccccccattcactcacccatcttcatttctaaattgaatttcggattagaggtttacttgttttctgtttgttt 36574796  T
Q  313 tagaagcttttagg 326  Q
    ||||||||||||||    
T  36574795 tagaagcttttagg 36574782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 49 - 326
Target Start/End: Complemental strand, 26530609 - 26530332
Alignment:
Q  49 tgttgttgatgtttagttttgagaaagatgatgatggttcaatttcttgatccagtgatatgtttgatagcgagatacacttttagggacccaaatgaag 148  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||| |||||||| ||||||||||||||||    
T  26530609 tgttgttgatgtttagttttgagaaagatgatgatggttcgatttcttgatccagggacatgtttgatagcgaggtacactttcagggacccaaatgaag 26530510  T
Q  149 ctttactcttttgtttctggtcccaaaattggagcttggtgggggtttgaaaaatgagggttttgtggatttgagctgactgaaggaactaccgt-cccc 247  Q
     ||||||||||||||||| || |||||||| |||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||| ||| ||||    
T  26530509 gtttactcttttgtttctagtaccaaaattagagcttggtgggggttt-caaaatgagggttttgtggatttgagccgactgaaggaactatcgtccccc 26530411  T
Q  248 cattcactcacccatcttcatttctaaattgaatttcggattggaggtttacttgttgtctgttttagaagcttttagg 326  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26530410 cattcactcacccatcttcatttctaaattgaatttcggattggaggtttgcttgttgtctgttttagaagcttttagg 26530332  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 26529573 - 26529508
Alignment:
Q  91 tttcttgatccagtgatatgtttgatagcgagatacacttttagggacccaaatgaagctttactc 156  Q
    ||||||||| ||| ||  ||| |||||||||| |||||||| |||||||||||||| | |||||||    
T  26529573 tttcttgattcagggacgtgtctgatagcgaggtacactttcagggacccaaatgagggtttactc 26529508  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 36575555 - 36575603
Alignment:
Q  113 tgatagcgagatacacttttagggacccaaatgaagctttactcttttg 161  Q
    |||||||||| |||||||| |||||| ||||||| | ||||||||||||    
T  36575555 tgatagcgaggtacactttcagggactcaaatgagggtttactcttttg 36575603  T

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Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 12887648 - 12887786
Alignment:
Q  18 ttcataaagaagataatggtgttgctgttgatgttgttgatgtttagttttgagaaagatgatgatggttcaatttcttgatccagtgatatgtttgata 117  Q
    |||| |||||| || |||||| || || |||||||| |||||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||| ||||     
T  12887648 ttcagaaagaatatgatggtggtgttgatgatgttgctgatgtttggttttgagaaagaagatgatggttcgatttcttgatccagggatatgtctgatc 12887747  T
Q  118 gcgagatacacttttagggacccaaatgaagctttactc 156  Q
    ||||| |||||||| |||||||||||||| | |||||||    
T  12887748 gcgaggtacactttcagggacccaaatgagggtttactc 12887786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 5005773 - 5005708
Alignment:
Q  91 tttcttgatccagtgatatgtttgatagcgagatacacttttagggacccaaatgaagctttactc 156  Q
    ||||||||| ||| ||  || ||||||||||| |||||||| |||||||||||||| | |||||||    
T  5005773 tttcttgattcagggacgtggttgatagcgaggtacactttcagggacccaaatgagggtttactc 5005708  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 156
Target Start/End: Original strand, 5014841 - 5014885
Alignment:
Q  112 ttgatagcgagatacacttttagggacccaaatgaagctttactc 156  Q
    ||||||||||| |||||||| |||||||||||||| | |||||||    
T  5014841 ttgatagcgaggtacactttcagggacccaaatgagggtttactc 5014885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 9448754 - 9448831
Alignment:
Q  83 tggttcaatttcttgatccagtgatatgtttgatagcgagatacacttttagggacccaaatgaagctttactctttt 160  Q
    |||||| ||| |||||||||| ||| ||| |||||||||| |||||||| |||||||||||||| | |||||||||||    
T  9448754 tggttcgattccttgatccagggatgtgtctgatagcgaggtacactttcagggacccaaatgagggtttactctttt 9448831  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 45296066 - 45296139
Alignment:
Q  83 tggttcaatttcttgatccagtgatatgtttgatagcgagatacacttttagggacccaaatgaagctttactc 156  Q
    |||||| ||| |||||||||  ||| ||  |||||||||| ||||||||||||||||||||||| | |||||||    
T  45296066 tggttcgattccttgatccatggatgtgcctgatagcgaggtacacttttagggacccaaatgagggtttactc 45296139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 38516682 - 38516620
Alignment:
Q  94 cttgatccagtgatatgtttgatagcgagatacacttttagggacccaaatgaagctttactc 156  Q
    |||||||||| ||| ||| |||||||||  |||||||| |||||||||||||| | |||||||    
T  38516682 cttgatccagggatgtgtctgatagcgatgtacactttcagggacccaaatgagggtttactc 38516620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 45291941 - 45292014
Alignment:
Q  83 tggttcaatttcttgatccagtgatatgtttgatagcgagatacacttttagggacccaaatgaagctttactc 156  Q
    |||||| ||| |||||| ||| ||| ||  |||||||||| |||||||| |||||||||||||| | |||||||    
T  45291941 tggttcgattccttgattcagggatgtgcctgatagcgaggtacactttcagggacccaaatgagggtttactc 45292014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 158
Target Start/End: Original strand, 52190387 - 52190432
Alignment:
Q  113 tgatagcgagatacacttttagggacccaaatgaagctttactctt 158  Q
    |||||||||||| |||||| |||||||||||||| | |||||||||    
T  52190387 tgatagcgagatgcactttcagggacccaaatgagggtttactctt 52190432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 9099621 - 9099560
Alignment:
Q  95 ttgatccagtgatatgtttgatagcgagatacacttttagggacccaaatgaagctttactc 156  Q
    ||||| ||| ||| || ||||||||||| |||||||| |||||||||||||| | |||||||    
T  9099621 ttgattcagggatgtgcttgatagcgaggtacactttaagggacccaaatgagggtttactc 9099560  T

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