View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16155_high_1 (Length: 694)
Name: NF16155_high_1
Description: NF16155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16155_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 16 - 642
Target Start/End: Complemental strand, 520431 - 519833
Alignment:
| Q |
16 |
atgtttttgtttacctttccaaaacgatagatagaacgctcaaccaagaagcaaacaaagaccatgacagtaacaacggaggcaactgaatatgtaggtg |
115 |
Q |
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| T |
520431 |
atgtttttgtttacctttccaaaacggtagatagaacgctcaaccaagaagcaaacaaagaccatgacagtaacaacggaggcaactgaatatgtaggtg |
520332 |
T |
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| Q |
116 |
tctcagctagagaacgagcttgctccacaacatgttccattataatatttcttcttattcttacatcaacagaacacagtctttagttcattaaaatgaa |
215 |
Q |
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| T |
520331 |
tctcagctagagaacgaccttgctccacagcatgttccattataatatttcttctta------catcaacagaacacagtctttagttcattaaaatgaa |
520238 |
T |
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| Q |
216 |
gagcagatagatgggatccaggaaggaaaaagagaagttcaatctgagagtgttttgttttatatgattaatt-aatttagttgaaaggtgcagtgcatg |
314 |
Q |
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| T |
520237 |
gagcagat----gggatccaggaaggaaaaagagaagctcaatctgagagtgttttgttttatatgattaatttaatttagttgaaaggtgca-----ta |
520147 |
T |
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| Q |
315 |
tgtgtggagagaggacattaattaaaatattgaatatgcaagtatagatcctactcacttttgatttgatcatatatttattaattaatgaaactctttt |
414 |
Q |
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| T |
520146 |
tatgtggagagaggacattaattaaaatattgaatatgcaagtatagatcctactcacttttgatttgatcatatatt----aattaatgaaactctttt |
520051 |
T |
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| Q |
415 |
gtttatagttattgtcaaagttacgtgcaatgcattggtgctgtctgtgacacacacatggtaccatccatgcacatggagagtttttcattctccaagg |
514 |
Q |
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| T |
520050 |
gtttatagttattgtcaaagttacgtgcaatgcattggtgctgtctgtgacacacacatggtaccat----gcacatggagagtttttcattctccaagg |
519955 |
T |
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| Q |
515 |
ttcttgttacaaacaactttttgatggtaagttgcaagggaccaaggggtcccggtccctctaagaaaaaccggtatggcattaattataattaattttt |
614 |
Q |
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| T |
519954 |
ttgttgttacaaacaacttttagatggtaagttgcaagggaccaaggggtcccggtccctctaagaaaaaccggtatggcatta------attaatttat |
519861 |
T |
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