View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16155_high_14 (Length: 226)
Name: NF16155_high_14
Description: NF16155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16155_high_14 |
 | |
|
| [»] scaffold0368 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0368 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0368
Description:
Target: scaffold0368; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 1984 - 1787
Alignment:
| Q |
17 |
tgagatgccattgttctgaattgtgaggtgtgggtatgcggttggtgcattgcacgttcgtatactccggcctcattgttttgggtagttttgaactttg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1984 |
tgagatgccattgttctgaattgtgaggtgtgggtatgcggttggtgcattgcacgttcgtatactccggccttattgttttgggtagttttgaactttg |
1885 |
T |
|
| Q |
117 |
gcttttgagaggtgttccgtatatttgcgcaccggattgtattcttttgtt-ttttcgtgagtatttatgcgttttgcatttatttgacgagaataat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1884 |
gcttttgagaggtgttccgtatatttgcgcaccggattgtattcttttgtttttttcgtgagtatttatgcgttttgcatttatttgatgagaataat |
1787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 38296621 - 38296424
Alignment:
| Q |
17 |
tgagatgccattgttctgaattgtgaggtgtgggtatgcggttggtgcattgcacgttcgtatactccggcctcattgttttgggtagttttgaactttg |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38296621 |
tgagatgccattgttctgaattgtgaggtgtgggtatgcggttggtgcattgcacgttcgtatactccggccttattgttttgggtagttttgaactttg |
38296522 |
T |
|
| Q |
117 |
gcttttgagaggtgttccgtatatttgcgcaccggattgtattcttttgtt-ttttcgtgagtatttatgcgttttgcatttatttgacgagaataat |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
38296521 |
gcttttgagaggtgttccgtatatttgcgcaccggattgtattcttttgtttttttcgtgagtatttatgcgttttgcatttatttgatgagaataat |
38296424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 172
Target Start/End: Original strand, 24018795 - 24018932
Alignment:
| Q |
36 |
attgtgaggtgtgggtatgcggttggtgcattgcacgttcgtatactccggcctcattgttttgggtagttttgaa-ctttggcttttgagaggtgttcc |
134 |
Q |
| |
|
||||||||| |||||||||||| |||||| | || ||| ||||||||||||| ||||| |||||||| ||||| |||| ||||||||| |||||||| |
|
|
| T |
24018795 |
attgtgaggcgtgggtatgcggctggtgcttcgcccgtgcgtatactccggcatcattattttgggtggttttttgtctttagcttttgaggggtgttcc |
24018894 |
T |
|
| Q |
135 |
gtatatttgcg-caccggattgtattcttttgttttttc |
172 |
Q |
| |
|
|||||| || | |||| | ||||||||| |||||||||| |
|
|
| T |
24018895 |
gtatatatgtgacacc-gtttgtattctattgttttttc |
24018932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University