View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16155_high_2 (Length: 453)
Name: NF16155_high_2
Description: NF16155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16155_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 43 - 437
Target Start/End: Original strand, 38926234 - 38926628
Alignment:
| Q |
43 |
aataatctacaagatttataattaatacaagaccagttttctttataactaaaccagcaagaaggattttgtttcttgctttttcttcctacgcaccaaa |
142 |
Q |
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| T |
38926234 |
aataatctacaagatttataattaatacaagaccagttttctttataattaaaccagcaagaaggattttgtttcttgctttttcttcctacgcaccaaa |
38926333 |
T |
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| Q |
143 |
caatcaaccttattacacaaaaacaagaacatgttctacaaatttcttgctaatctttcctgtgccgccatctgttttctgaacctgttaatgaactcct |
242 |
Q |
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| T |
38926334 |
caatcaaccttattacacaaaaacaagaacatgttctacaaatttcttgctaatctttcctgtgccgccatctgttttctgaacctgttaatgaactcct |
38926433 |
T |
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| Q |
243 |
ctgctcgttcatcaattccttgcatttgaggtgaagctaatgctaccgactcccacatatcatctgatgtattagttctgtcacatgatcgattgcttgc |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38926434 |
ctgctcgttcatcaattccttgcatttgaggtgaagctaatgctaccgactcccacatatcatctgatgtattagttctgtcacatgatcgattgcttgc |
38926533 |
T |
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| Q |
343 |
tccttctagcacgtcttttttctctcgttgataatcaccaatcttcgcagttatttcaatttgtggtctttgaattggtgtccgtggcttcaaat |
437 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38926534 |
tccttctggcacgtcttttttctctagttgataatcaccaatcttcgcagttatttcgatttgtggtctttgaattggtgtccgtggcttcaaat |
38926628 |
T |
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