View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16155_high_4 (Length: 403)
Name: NF16155_high_4
Description: NF16155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16155_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 12884287 - 12884346
Alignment:
| Q |
1 |
gctggaggaacctgcgggtgggaattggttcaatatgaaggttgttatgggggtagtaaa |
60 |
Q |
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| T |
12884287 |
gctggaggaacctgcgggtgggaattggttcaatatgaaggttgttatgagggtagtaaa |
12884346 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 96 - 182
Target Start/End: Original strand, 12884447 - 12884533
Alignment:
| Q |
96 |
tgggtgggtgataaccctcttcgtgttaggttccctagaatgaattcactttcaaaccaaaaggaaggcttctttaacgaaatggaa |
182 |
Q |
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| T |
12884447 |
tgggtgggtgataaccctcttcgtgttaggttccctcaaatttattcactttcagaccaaaagaaaggcctcattaacgaaatggaa |
12884533 |
T |
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