View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16155_high_5 (Length: 365)
Name: NF16155_high_5
Description: NF16155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16155_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 349
Target Start/End: Original strand, 36268454 - 36268774
Alignment:
| Q |
10 |
cagagatccaatgagaagtgaaaatgtccctataattcatctcatttcatcaagcatcatttagctagccctagctagcatgcagtttcaagttcccacg |
109 |
Q |
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| T |
36268454 |
cagagatccaatgagaagtgaaaatgtccctataattcatctcat---------------ttagctagccctagctagcatgcagtttcaagttcccacg |
36268538 |
T |
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| Q |
110 |
ctccataacctaagcaaaaatagacttccctacattgttatagcttttggcatcatccacattccacagtacatacgtagattttaacattctctttcgt |
209 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36268539 |
ctgcataacctaagcaaaaatagacttccctacattgttatagcttttggcatcatccacattccacagtacatacgtagattttaacattctctttcgt |
36268638 |
T |
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| Q |
210 |
ttcaaataccaagaaacccaaaatccctttattttcagccattgctcatcttctacgtaaattgcccactcccattaactaataaaagaaaacacatatg |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
36268639 |
ttcaaataccaagaaacccaaaatccctttattttcagccattgctcatcttctacgtaaaatgcccactcccattaactaataaaagaaaacacatttg |
36268738 |
T |
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| Q |
310 |
tctacgactagtattttgttataactttttgggaataact |
349 |
Q |
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|||||||| |||||||||||||||||||||||||||| |
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| T |
36268739 |
tctacgac----attttgttataactttttgggaataact |
36268774 |
T |
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