View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16155_high_8 (Length: 329)
Name: NF16155_high_8
Description: NF16155
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16155_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 222 - 321
Target Start/End: Original strand, 43795604 - 43795703
Alignment:
| Q |
222 |
ttgggagagaatatatagatatctcctctcctaattctttccaaaattacacctttctctattccttcaggtttttaatcgcacttccattcttctcact |
321 |
Q |
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| T |
43795604 |
ttgggagagaatatatagatatctcctcttctaattctttccaaaattacacctttctctattccttcaggtttttaatcgctcttccattcttgtcact |
43795703 |
T |
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Target: chr2; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 19 - 101
Target Start/End: Original strand, 43795399 - 43795481
Alignment:
| Q |
19 |
tatcatatataccataccacgaatctttcagaagaagaaaaatatatacaccnnnnnnnttatataaaccaggaatagttcat |
101 |
Q |
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| T |
43795399 |
tatcatatataccataccacgaatctttcagaagaagaaaaatatatacaccaaaaaaattatataaaccaggaatagttcat |
43795481 |
T |
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